LOCUS AK036789 3735 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930010H02 product:unclassifiable, full insert sequence. ACCESSION AK036789 VERSION AK036789.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3735) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9930010H02 FEATURES Location/Qualifiers source 1..3735 /clone="9930010H02" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:9930010H02" /db_xref="MGI:2401242" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="female" /strain="C57BL/6J" /tissue_type="vagina" misc_feature 1..3735 /note="putative" /note="unclassifiable" BASE COUNT 920 a 863 c 850 g 1102 t ORIGIN 1 acaggcagtc agaaacttca tgagaacaaa ccaaatccat gtcatgaact aaatactgat 61 tgtctgaagt gtggcccact tgtgagtaat gtaagccata gactgttgga agggatcgtc 121 taagcccatg tggtagcatc cttggtgccg cgctataggt tatgggcttt ttggatctag 181 agtgggagtg tttgcttggt tataatgatg taaatactgc cttgtggagt tcaccttcta 241 aaatcaacag caccctgcag accacgtgaa ctacccacag agaaacctat aaagactttc 301 cacctttata atacgaggtg aaaaacagcc cagagaagct ggacagccta agaggaaaga 361 tgtggaaggc tggaggtcta aaccacagtt tccaaatctt catcatgaaa gaaagttgca 421 cagtcttgcc cagtgccata gggcttgtcc gcgtctggtg gaggagacca ccttctcctc 481 tgctcattgg cactgggctt tatgcatgat ctgatttgtg ccattgcata tgagtggaag 541 caataatctg tcctgaacga atcctgtaag aggcgctgtg agattgtgtc ctcagtgtcc 601 gaggctgagt cccagcacta gtagggtatg gctagtgaga cctaagttgg aactaaaccg 661 ttgttagttt tcatcattac tgtcctggat catgcaccga aactgactgg caggtagagg 721 agagggcaga ggtatgaatg ccgtcaccac atgcagtggg gagtgaatcg atgctttcta 781 tggttgatag gtgaatagtg ggtaccaggg ctgaccacaa gataaagtgc acccgcagca 841 tggtgggacg acagagcggt ggtgggatgc taggatgaag tcagaacaag aagaaaggga 901 ggttcgccaa gctgatttca tgtctcatag cagaaggcca ataaatggct ttgtctgtaa 961 gggataaagc cagaaacagc tttacacatg ctcctcggag actagggaga tgaagaattg 1021 gcatcatcgt ttttctcctg tcttctggct catcccagca gtgtatatac atgcagaaat 1081 tgtgtctcat ccttcaaaga cagacttttg gttatagtct gccttgggct gtcttatagt 1141 tctgtactct cttgtacagg aaactctctg aacctgtggc tgtctggatt tgtggtctcc 1201 actatgtttt ccctctttct aaggtttttg catctgttac ccacctagct ggctctcata 1261 ggactcactc ttctcctcta ggttgctgaa tccaggggcc aggtctgtgc gcctccttcc 1321 tggacccacc agccttggac tccgtgctta ttgcctgctc cttgaaaggt tttcttcatt 1381 tggcttcgtg ttcctttttc ccgtggatcc ttcattccct tagctcctct ctgcaacctc 1441 tggatgtggg agttccccag ggcctccatc ctgactttga tcttctttct cctgcccaca 1501 cttgctgcct tggctttaaa tcgcaactcc atgatgataa cttccaagct cagagcccta 1561 gataagccct tgcttcaaac ttgagagtct cacatccaac ccagcacctc cctcccaaac 1621 cacaaggaat cttagacttg gcctttgcag aaaccaatgc ctgctcttcc cccaaacctg 1681 aatgtcccag gctggaacca gggctcatcc ttgccccatg ccccctctca cccatacctg 1741 ctcctgacta ctttcaaact ctataccgga caacttctta ccatcctcta gcctaaacca 1801 aactactgtg agagctgtgt gtgtgaacag tgtatgtttg tgtacacata tgtgtgtgtg 1861 tgtgtgtgtg tgtgtgtgta ttatgtgggg gtgctttgta tgtgtatact ctctgtgtgt 1921 gcacatatgt gtctattatg tggggatgct atgtgtgtat atagtctcta tgtgtgtaca 1981 catacgtgtg tattatgtgg agatgttttg tgtgtgtgaa cagtgtgttg tttgtgtaca 2041 catgtttgtg tgcattgtgt gggggtgctt tgtgtatgta tagtctctct gtgtgtgtat 2101 attatgtggg aatgctgtgt gtgtgtatac agtgagcaca gcacgcatgt gggcattaga 2161 gagccacaca ggcatcagtc cttaccttct actttaaaac aaggtctctg ttgctttttt 2221 ctgctgcaca cacctgacta agtggactgc gaacttctga aattctctgt tctccacctc 2281 tcatctgctc ataggagccc tgggttacag aagttcctgg gtgctccctc tgtgcccttg 2341 gcttttccgt gagttctggg aatctgaatt caggtgcttg ctctcacagc aagcgttttt 2401 gacccattaa cccatctctt cggcctgttg gattttgcaa aagggtctca ctctgtggtc 2461 caggcagggt tcccgagcca cgacacttat ttttgacagc ttctttagaa catatttcct 2521 tcattttatg tatatgggtg ccttacctgc atgtatgtct gtgtaccatg cttgcagtga 2581 ctgcagaagc cagaagaggg cgttggctca cctgtgactg gagttacagg tggtcttgaa 2641 ccactaagta gatgctggga tcaaaccaat gctcttaacc cctgaaccat ctttccagca 2701 tttgatggct gcttaaatgg tcttctttcc ttcacagtaa gcccttacta gtgtctcttg 2761 cagtctgttc tcaacatatc agctagattg attgtttgtg accaaattag atgactccac 2821 tctggttttc aaactcccaa aacaaacaag cacacacaca cacacacaca cacacacaca 2881 cacacactct taagccaaac taaccccctt cccaaataac tcccacagca ctcagtaaaa 2941 tctcaagtct tgttataatt tgtacaaccc taggttagaa ttttcaatgg aacattataa 3001 gaattttata ggtctttaac aatttctggc acctaaagta cacaaggtta ccaaaagaag 3061 atacatctta acaatatatt tcatgtcata tatatacata tatattacta tcatttcaat 3121 gtatatagac aacactaaat tatcagtgag actttagtgt ttcttttggt gtgtaagaag 3181 ttttcaaaac ctgacaaaat ctagcatgtg ttttacacct gcagaatttc aaggtggttg 3241 tgtaagctgt gctcatgttt ctttctgaga tatgacttgg aaactaactg tagccaaggg 3301 cagatactgc caggaacatt tcagtgatga gtaggcaacc tgccaagcaa ggaagttgat 3361 ttgctactgc ctttcaaaca gacctgtgct gtgcacctac tgtgtaacag ctttgctctt 3421 tggagccaga atccaaagac agtagatgga taccagcact caggagctaa ttgtctcccc 3481 aagaaggaag gtcaatagat cagattgggg tgtgtgctct cctgagggtg ggctgcaccc 3541 taattgatag agtcagcttc ctgggaaact tggagacttg gaaaaggagc agcagaagac 3601 tagtcaggag gatcatgagt ctgaagccag tctgggctgc ctagtgggag caatctcagg 3661 tcaagtgagc agctcaccta gcctctctga gatagtctgc ctgcctggcc tccctactga 3721 tcatcatgct ttgtt //