LOCUS AK034105 3314 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male diencephalon cDNA, RIKEN full-length
enriched library, clone:9330156P08 product:unclassifiable, full
insert sequence.
ACCESSION AK034105
VERSION AK034105.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3314)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9330156P08
FEATURES Location/Qualifiers
source 1..3314
/clone="9330156P08"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9330156P08"
/db_xref="MGI:2398294"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="diencephalon"
misc_feature 1..3314
/note="putative"
/note="unclassifiable"
BASE COUNT 1027 a 539 c 566 g 1182 t
ORIGIN
1 tttttttttt tttttttttt tttttttttt tgagacaggg tttctctgtg tagccctggc
61 tgtcctggag ctcactttgt ggaccgggct ggcctcgaac tcggaagtcc gcctgcctct
121 gcctcccaaa tgctgggatt aacggcgtgc gccaccacct ggccctgtat ctttctatga
181 cagcatctaa agaagctgcc attaaccaga acctgtcagt atggcagcct tcattgtctc
241 ttttcccatc gtccttcagc tcctccttgg cttagtaact gacttttccc ctttaatttg
301 taaagaaata tgttcataaa aacatatgaa aaagtgtaaa ttacccagta gttaagtgag
361 aacctttgta gtggcattgt aaagtagtct ctgggacaag gttgtaacat tgttatttca
421 tacaacacaa atacttacca tttctaattg tggctttgag tctaacattg acatagggtt
481 tcatatatac catgttttca gatgattaaa tgcttttgta aacttaaaaa tctttccctt
541 gaaatagcac agaagtaagg aaacatccta gagttggcca tttctatgct attaagcctc
601 atttgcaggc tgaagacgta aagttctatt aaataataaa ttaagtatac tataagaaaa
661 atgttataaa tagtattgtt aatgtatgga tacaaatgac tggggagagt ttcatctgaa
721 tcttttaata ctaaaaggca cagactgtct catttcagat tgttccttta gaatttggat
781 cagagaccac aaagagccaa cgtacagctt catttcctgt tacttttcat agagtataat
841 ctctagagtc catattcaag acaaaacact gtaaataact ttaggagaaa ttttcataaa
901 gaaatttcca aaataatgta actagtaaga ctatatctga ggctataaga ttaagtaatt
961 tttacttgtt acaggataat acaatattta tattttccaa atgaaataat actgctatca
1021 tactagaggt tgctcataag ctcagttaac agaaataact atttcactaa aaattttatg
1081 ctctgaacac aaaacattgg cttctttatt tcattttaat acagtacttt aaatatatat
1141 tgtgaggata atttgctaga aaaatcttaa tttattcaag aaccattgtg gacttcttgc
1201 gtgaccctgt catgcattat gaacaaaaaa aaaatcacaa catttgattt tttattatat
1261 acacacatat tatatatttg aactaggaga acataaacaa aactgacaat atagtaaata
1321 tcttttagtt cctactcatt agaataagtt attaaaatag gtttcctgcc gggccgtggt
1381 ggcgcacgcc tttaatccca gcacttggga ggcggaggcg ggcggatttc tgagttcggg
1441 gccagcctgg tctgcagtgt gagttccggg acagccgggg ctgcacagag aaaccctgcc
1501 ttgaaaatta tatatatttt tccttagaga aaatgaataa gaatagaaaa ggtattttta
1561 taaaagtaat ctttctcagt ggattataat tttaaaatat tgagtaaatt ttttacactg
1621 ttagattaag atttgcttct aaggtttgtc ttcgaacaat atcaaaatat tccatccatt
1681 aatattatgt gttacttttt agctatttac cattttattg ttttttataa ttatcaagat
1741 aatattaaat tgatgtagct ctgctcttat gtatatcata tttattggct tttactacat
1801 tactaactca attaactact tagacttaat gctataatat ctttagtcgt gtccatgagt
1861 taaatacaga aatgatgatt ccatttttaa aagtttttag agtgctctgt gtaaaaatgt
1921 tattcgtgtt tgtgtatatg agttattgtc agctaatctt aaaatcagtc ttaggcatct
1981 ttaattctag tgtatttaat gaatatcctg aaattttagt taattgcttt taatggtaag
2041 aagaaaccat taattacaaa tacatgataa ggattagcat gtaattatag ttaaaatgaa
2101 caccacagtc atgttggtga tgattaaagg tctggtgaga gggtaagtga catgttttcc
2161 tcatctgcct tgttaagctg cgtttgagag agtcttcata atggcagcaa tccccagatg
2221 atgtgacagc gtagtggctt tatttcctta gcttctgctt ttaatagaat cttataaaag
2281 atttgagttt gatgttcaaa aaattttttt gccaagagtg ttttcatgtt taattatgct
2341 ttttgtttct tgcgtttatt ggaattacac atagaaaagt agagttgtaa ttttcaaact
2401 ccatagtggt ttttttttca aaaatcagaa tgttattgta aatgatatag ttggattttt
2461 tttaatattc ccactcaata ccatttcaaa atactactgc tgtgtagtta cttagtttct
2521 ttaaaaagaa aaataattag attttttaat gaaattgagt tttagtttaa gagcatatag
2581 ctctaaatgc acagatagtg atttttgctg ttctatttta ttgtaggtaa cactagttgg
2641 tctttctaca gtattactgt agttttcaat atagcctggg tttacttgtt gcagctaaga
2701 aaataatttt tatttcctca tttttgttct ctttcattga cactaattag tgaaaactag
2761 ttaagaagaa acaacaaatt aatacatggc agaaattctt caaaagaaaa agatttctat
2821 taaagggttc aagaattctg aagtcagcaa tcacaaatta aactgatagt gagtcttttt
2881 ctttctctag tggcttactc actgccatgt catatcttta tgggaccata aaacatgctg
2941 ataaatgttt taacacctga ctctggtcaa taaactgcta aataaactgc cagttttgtg
3001 atagaaactc ttgttcaccc acagccgaga aggtggtgcg gctgcatgct ttaactctgg
3061 tgctggacac tggacactgt gctcacctct gctagctcac ggtcccacta ctcaaggagt
3121 aggcttgctc taaaatgtgg gtcagtatta gtgaaaacac aagctatctg cccttgactg
3181 tagacatatt gaagccacaa gacttagagg tcaaagtcat tggaactatt tattcctatt
3241 cacagaatta ccttggatcc agggtttatt gtcttactgt tgagtattag ggcttcagga
3301 tctcatgata gccc
//