LOCUS AK033911 2668 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male diencephalon cDNA, RIKEN full-length
enriched library, clone:9330115A01 product:weakly similar to
CORNICHON [Boltenia villosa], full insert sequence.
ACCESSION AK033911
VERSION AK033911.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2668)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9330115A01
FEATURES Location/Qualifiers
source 1..2668
/clone="9330115A01"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9330115A01"
/db_xref="MGI:2398092"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="diencephalon"
CDS 797..1279
/codon_start=1
/note="putative"
/note="weakly similar to CORNICHON [Boltenia villosa]
(SPTR|Q9BJN0, evidence: FASTY, 58.5%ID, 99.3%length,
match=477)"
/protein_id="BAC28511.1"
/transl_table=1
/translation="MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQ
CNPVHARERLRNIERICFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHF
WRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVSS
"
BASE COUNT 602 a 721 c 700 g 645 t
ORIGIN
1 attcctcgcg gcgcccgcgg cagcagcaga agcagcagca gcagcaggtg gagccccatt
61 cagctgcgag ccgctcttgg ccggaaaccc gcgccgcagc cgcctggccg ggagctggcc
121 ctccaggctg gagcccacgc cgccccggcc cgacccagtt tcccaggcac cgggttaccg
181 aagccggcgg ccgggggacg cggttgggtc cggggccgga tgcatctcag tgcgcatagc
241 tgcgctggga gaccccagcc cggggcgcag ggctaacggg acctggccca cctcaagact
301 tgtgctctgg ggacagagcg gctttgggat tcggagtcca ggcacctggc cggaggctgt
361 tgaagtctgg gtgtcgtgct caccccacct ctttgcttgg gcaccaacag agagagctct
421 ttccagagga ccggacctcc tcgcctggtc cagagtggag tcctcgcacc cggtgcctgt
481 tagtttcgag aacctttcta gttgacactg gtctgcaggt gttctctgct ggttaggttt
541 cttcttcggc tagggggact gttgctacca gaggcattct gtgcctgtgg gcgctccaag
601 tcccgggtct ccagtcctgc cagaatcgtc cgggcttcgc tgaccctcaa ctctgtctct
661 gcttgtcgtg ggtgcttcta gtcatttggg tttttacccg gagtgtgtag actagacatc
721 tttctgactg ctaattggga aggcactggt ctccagggag cggctttgtg tgtggtggga
781 tccggggtcc tcagccatgg ccttcacttt cgctgctttc tgctacatgc tgtccctggt
841 gctctgcgct gcgctcatct ttttcgctat ctggcacata atcgcctttg acgagctaag
901 aacggatttc aagagtccca tagaccagtg caacccggtt catgcgagag aacggctgag
961 gaacatcgaa cgcatctgct tccttctgag aaagctggtg ctgcccgagt actctatcca
1021 cagcctcttc tgcatcatgt tcctgtgcgc tcaggagtgg ctcaccctgg gactcaatgt
1081 tcctctgctt ttctatcact tctggaggta tttccactgt ccagcagata gctcagagct
1141 agcctacgac ccaccagttg tcatgaatgc ggacaccttg agctactgcc agaaggaggc
1201 ctggtgtaag ctggccttct acctcctctc cttcttctac tacctgtact gcatgattta
1261 caccttagtg agctcctaac tcagaccctg ctgatggaga ggccgaagct gggaaccact
1321 gcggctgtgg ctagaggagc accagatggg gatgacggag agacccagat ggcagagacc
1381 gaatgaaagg aacgggagtc atacagcagt cagagccatg ttacccacgt gtgtctgttt
1441 ctgccttcgc atttcacatc ccacatgggt tgcagggccc ctctgagcat gggcgtgcca
1501 gcttgtagct gatgaaacac tcaacctctg gagatgccat tattacttcc ttcatccact
1561 tcactgagca gcagaactgt gcgagtttca catggagagc tcgtctggat ggtagaaatg
1621 aggccagatg ctggcaggtg tcgaacaagg gacagaatgg ctcagggcca aggccagatc
1681 ttcagggatg gctgagaccc acagggacac catgggctgc ccaagactct tgtcattttt
1741 tttccagagc tgtggtcaca tgctttgctc agtgcaaggc agaaagctgt ggggactgcc
1801 ctgagccacc tctcacgtca cttttacgct ctgtgtccag gagcctgggc tgtggcttcc
1861 tgagctgggt gtggcagcaa gccctgtcca gtgtgaactg gggaggggga gaaaatggat
1921 ttctaaaaat gtctgcaaca tgtcccaggt gtgagttctt caccctccca agatgtattc
1981 tgccactgtg ccaaaaattc atcagagtca ttacatgcca atcagctggc tggcatgagc
2041 caaagcaaaa aacaaaacaa aacaccaaac caaaccaaac ccctcaaaat agtgcgaagc
2101 ccagaaacag agagctgctc tgtgtgtggg tatggacagc caggaagtga gacaacacaa
2161 ttatcacatc cattgatgct tcacggcctt tgtgctcctc agttcaatgt ggggacatcg
2221 cttatttaga aatttccact tgacttttgc tccttttttg ggtgggagtt gcaggacagg
2281 tgtaaatact gacaaggctg agtttttatg atgcttaaac tgggcacaat gattttaacc
2341 tgattcccca aactgccttg ctttctacca ttacacacac atacacacac acacacacac
2401 acacacacac acacactatt tatatatgta ctggttccca tctgaattct gtgactcagt
2461 tttttgaatg gtgtttgtgt aacacattgt gtgctatgtt taagatgcag caacaacttg
2521 agtggctcac ctcatctcat ttcaacccac ccccggggta tccatatggt tggcaaacta
2581 gtaggtagaa aagcgttttt aaaaagaaac agtgtttctt aaaaaaaaaa attacagaaa
2641 acaaaataga gagaaaaaaa aaacttgc
//