LOCUS AK033523 2610 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male colon cDNA, RIKEN full-length enriched
library, clone:9030425J18 product:unclassifiable, full insert
sequence.
ACCESSION AK033523
VERSION AK033523.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2610)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=9030425J18
FEATURES Location/Qualifiers
source 1..2610
/clone="9030425J18"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:9030425J18"
/db_xref="MGI:2397560"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="colon"
misc_feature 1..2610
/note="putative"
/note="unclassifiable"
BASE COUNT 694 a 561 c 627 g 728 t
ORIGIN
1 aaagtgacac gcccaggccc agaaagccag acagagtggc ggctggagac tccacagaat
61 ccttgtaatt tgaaatggaa aaggtctgtt ggcttgtgtg gtgttgtcct cccatggggc
121 cccaacccgc tttagaaggt gacataaaat ttaccttgtc actctgagca ctcaattggc
181 ttttctgggc cttatctgag aattcaagat ctaggccagc tcgggaattt gaatgtggat
241 ctggtaccat ttagggatgc caccgaaagc cggatgctct cggagactgg cactcctcat
301 aggctgttct gcattccagg gtggctacaa caaatgacag tatctcttct agtctgcagg
361 tttgaaaaca aaagacttct tggtctgcaa caaccttcca gactttctag aaggctttgt
421 gtcaaagaac ccaaggacag aagttgataa aagggcatct cctgtactga acttggagag
481 aatcactgtc cagtccagtg cctttcacta tgttgttaac ctattgtttc ttgcttattt
541 ttattactgt tttatgctta tcccatgtat tgagttcaat tttgtgacac tatgctcttt
601 tgtttcaagt taatctttta aaactttgtt ctgctttttg actgaaacac taagatcttg
661 gttttgtggg caggcgatgg gcttggtgag ctctttgacc ttcactgcgc agaaggggaa
721 accatctctc gtgtgcttct ggaaaggcca gcaactggct ctgctgaatg agagttagca
781 tcctcctcaa catcccctag cagctggaac acagggaggc cgtctgggtg ggttgatgtc
841 tgtccaagcg actgagtgct tgggagttgg ggggcaggag aaaaaatccc tcccagtcac
901 ttcattgttg gggtcccaga gccctgggct gatcctcagg catgatttca gtgacagaga
961 tctggtctca gagatgggga ggaaacccct agaacgccta ccctccagct ctgaagggcc
1021 agccagtctc ttggaacagg aaagcagcaa ccacaaacag gaatttcctc atgggagatt
1081 gaagggatgt gtgcatggaa gtgcacattg gtgttttgca tgtttgcagt tgacccagga
1141 agttggtagg gtatgaggca gagggaatca aaaccttcaa atctcttccc tccctctggc
1201 cgcaagaaag gcttctggaa aatgtgagct ttgtgataag ggaatgagct cctaaatatt
1261 tacaaaattc taggatgtgt tggctacaga agaggggcct ccatacgaag cctttcagtt
1321 accaaccttg agctttcctt agaatctctg gtggaccatg gttaccaaac gttgccctga
1381 tttactgcct gtttgagaat tcatctccaa acatttaagg ccaaggaaga gcaactgtgt
1441 gagtgttttt taattactga agtactcatg tggtaaatct ctgagtctgt ctgggaagga
1501 gtttgtcccg tagtgggaag gtcattccag ttcaagattt taaatgagcc ggaggctgga
1561 tgatgctaac agactttctc ttataaaaga ctcttgtggc cgtgggcccc gcagtgtgga
1621 gtacccatca cttactgtgt aagtagttgg tgatttcaga aacaggcctg gctgtcggct
1681 tgccagatga tgcgctgctt aacctcacgt ataaacctcc ttcctctgtc gttgttatct
1741 caagggcctt tgtcacatca cttcgctcat ttccctagtg agaaaccgtg acacactcca
1801 gaagggcagc tcctatggct gcctgctcgg tttttttcac agcgagccag gaaaaggtga
1861 gtcacgttcc tctccagtct cgttcacctt caccagtagc gcacacacag ttaatacagg
1921 aaatacgcat tgcagcgtac acaagaaact gtcagcgacc agttgtgtcg gcagcggcta
1981 gcctagatta tataatgttt taagagataa gtcacgttag tgcttttgtg gccatgtata
2041 attacattgg agaactaatt tactgagtta ataattagta atgtgacttt atggcatgct
2101 aaccattctg aagtacttgt cctgttagca tttattgcta attagtagag tagccccatt
2161 ttcattactg agaaggtaca ctgctttcag tttgcgactg cattattaaa gtctaaatag
2221 acaagcaaac ggtacttaga catgggtcct atgagatctg gggaatagaa gtttcaggac
2281 tacggtacta aatgcagaaa tccatggcct ttgtaagctg tcagtggagt aagacagtgt
2341 agcaccctga gaaatgaaga ttttaaaaaa acaaaaaaca gaaacagcag tcctggcccc
2401 aaaagttgtt gaatctggcc acttaaaaag caaaaagaag atgtaagtct ttgagagtta
2461 agggcttaca ttgtcccttg caattgtccc aaaagtccct atggtgatgc acatctataa
2521 tccattccag tccttaggta aggcaggagg atcaccagtt tgagactagc ctgggctata
2581 cacgctgtct cattaagaaa aaaagaaagg
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