LOCUS AK032759 1803 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720429P16 product:CHEMOKINE-LIKE FACTOR 2 VARIANT 1 homolog [Mus musculus], full insert sequence. ACCESSION AK032759 VERSION AK032759.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1803) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=6720429P16 FEATURES Location/Qualifiers source 1..1803 /clone="6720429P16" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:6720429P16" /db_xref="MGI:2396400" /db_xref="taxon:10090" /dev_stage="12 days embryo" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="wolffian duct includes surrounding region" misc_feature 1..1803 /note="CHEMOKINE-LIKE FACTOR 2 VARIANT 1 homolog [Mus musculus] (SPTR|Q923S5, evidence: FASTY, 98.8%ID, 94.1%length, match=243)" /note="putative" BASE COUNT 431 a 470 c 482 g 420 t ORIGIN 1 gagttgagct ggtggcgcga gtcctggaaa gagccattaa tcgagaaggc ttgaaagaga 61 ggcgtgactg ttgggtctgt gggcaagatg gagactccac ggccggtcgt aagccgtcgg 121 cccttctgct gtactctgaa atgctttgtg aagttcctgc ggttggtggt aactgtgaca 181 tctatgatct ttttcatcgt gggacaagcc cctgaaccat atatcgtcat cactgggttt 241 gaagtcaccg ttattttctg tttcctagtc ttatacacgt gtggacttga caagataatg 301 agatctttct tttggccttt gcttatctcc tttccatgtg agtgccggct agtttcatgt 361 caacttgacc caagctagag aatggaaagg catcctgaga cacaggaatt caggaaccac 421 atacctctac aaggagccac ctcagcagag gccgtccagc cccagggagg agatccccag 481 ctgagcgcag gaccctcagc cactctcctt ctcttcatta cttttttcct tcatggctcc 541 tccaaggaga gtgtcacacc aagaagaaaa tctcatgaaa gagatttatt gggaggccca 601 tggtgtatag ctgtgaatcc agggatagct gccggagcgg gcagcacaga ttgggacaaa 661 ggggcagtgc ttatatagga tttctgaggg ggcagagctt ctctggacag attcaagtca 721 tgagcttggg gtactcaaga attgataggt tttcttgttc agagattggt agcatttttc 781 acccccttcc ccctgcatct ggcccatggg ttagggtgga aagtccttcc tggcctgagc 841 tggcttgcgc tgagatgaca tctctgtgga actgctgggg tcagagggta ctagagaagt 901 ggtgctgccc ccaaagacgg cttttgaggg acaactttgg ctgaggcaag agaggaaatg 961 ggccaccata gacagctcct gggttggccc cacactgagg agatgtagta gtgcctcatt 1021 ttaaccccag gcacatttgg acatctcttg tggggtgttt tactgcagtg gtcgtagact 1081 gggatgtgga atggcctctg ctttcatgga ttttgcacca tgccctatag acactataca 1141 tacccccaaa taaccccaga accccttttc tctgggttgg ctggcagcag ctcctgtgca 1201 tgtggttgct gggtcttgag ttttcaagct aggcatggcg ccattttccc acaacgagga 1261 cagcagattg ctaggctagg cagcagccat caaaaaacag gtgcacgcgg gatagactgc 1321 cagcagccgt tgaagacagt ttcccagggg gccatcgccc tgcggccacc cagccaaccg 1381 gaggtgcagg gccagcctga cataatgagg cttggaaccc accatgaatc ctgcatccgc 1441 caggcgtgag tccagcgggg atgggtccag gcgtgagtcc agacgctcaa ctttacgacc 1501 tcgagtgttg gatgcttcct caccttcgga ttcacaggcg tatgctgcct ctgctccacc 1561 tcaccaggga ccttcagtac ccgggacacc aaccagccag ggaccttcag tacccgggac 1621 accaaccagc cagggacctt cagtacccgg gacaccagcc agccagggac cttcagtacc 1681 cggaacacta accagtcagt gaccttgagt agggaccatg ccatctagta agttcatgca 1741 gtcgctgcac agagatcaca ttgccaacaa attacaaaaa aaaaaaccaa acaacaaaca 1801 agc //