LOCUS AK030889 3829 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830444G22 product:SIMILAR TO ADP-RIBOSYLTRANSFERASE (NAD+, POLY (ADP-RIBOSE) POLYMERASE) [Mus musculus], full insert sequence. ACCESSION AK030889 VERSION AK030889.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3829) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=5830444G22 FEATURES Location/Qualifiers source 1..3829 /clone="5830444G22" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:5830444G22" /db_xref="MGI:2394058" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="thymus" CDS 63..3107 /codon_start=1 /note="SIMILAR TO ADP-RIBOSYLTRANSFERASE (NAD+, POLY (ADP-RIBOSE) POLYMERASE) [Mus musculus] (SPTR|Q921K2, evidence: FASTY, 100%ID, 100%length, match=3042)" /note="putative" /protein_id="BAC27173.1" /transl_table=1 /translation="MAEASERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMF DGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQDGS GGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHP TCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEVDGTDE VAKKKSKKGKDKDSSKLEKALKAQNELIWNIKDELKKACSTNDLKELLIFNQQQVPSG ESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSRKEW VTPKEFREISYLKKLKVKKQDRIFPPESSAPAPLALPLSVTSAPTAVNSSAPADKPLS NMKILTLGKLSQNKDEAKAVIEKLGGKLTGSANKASLCISTKKEVEKMSKKMEEVKAA NVRVVCEDFLQDVSASTKSLQELLSAHSLSSWGAEVKAEPGEVVAPKGKSAAPSKKSK GAVKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGT NSYYKLQLLEDDKESRYWIFRSWGRVGTVIGSNKLEQMPSKEDAVEHFMKLYEEKTGN AWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVKPGTKSKLPKPVQELVGMIFDVESM KKALVEYEIDLQKMPLGKLSRRQIQAAYSILSEVQQAVSQGSSESQILDLSNRFYTLI PHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLK TDIKVVDRDSEEAEVIRKYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHN RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGD PIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASITLEGVEVPLG TGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLW" regulatory 3808..3813 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 3829 /note="putative" BASE COUNT 1025 a 930 c 1081 g 793 t ORIGIN 1 ggacacgtta gcggagcgca ccagcggcgg cgtcgggctg ccgctgcagc acgagaagga 61 ggatggcgga ggcctcggag aggctttatc gagtggagta cgcgaagagc gggcgcgcct 121 cttgcaagaa atgcagcgag agtattccca aggactccct ccgcatggcc atcatggtgc 181 agtcacccat gttcgatggg aaagtcccac actggtacca cttctcctgc ttctggaagg 241 tgggccactc catccggcag cctgatgttg aggtggatgg cttctctgag ctgcgctggg 301 atgatcagca gaaggtcaag aagacggccg aggctggagg cgtggcaggc aaaggccagg 361 atggaagtgg cggcaaggcg gagaagacat tgggtgactt tttagcggag tacgccaagt 421 ccaacaggag catgtgcaag ggctgcctgg agaagataga gaagggccag atgcgcctgt 481 ccaagaagat ggtggatcca gagaagccac agctgggtat gattgaccgc tggtaccatc 541 caacttgctt tgtcaagaag cgggacgagc tgggcttccg gcctgagtac agtgccagtc 601 agctcaaggg ctttagcctc ctctctgcag aagacaaaga agctctgaag aagcagctcc 661 cggccatcaa gaatgaagga aagagaaaag gtgacgaggt ggatggaaca gatgaagtgg 721 ccaaaaagaa atctaagaaa gggaaggaca aggatagtag taagctggag aaggccctca 781 aggctcagaa tgagctgatc tggaatatca aagacgagct gaagaaagcg tgttccacca 841 acgacctgaa ggagctgctc atcttcaacc agcagcaggt gccgtcagga gagtcagcga 901 tcttggacag agttgctgac ggcatggcgt ttggggccct tctgccctgc aaggagtgtt 961 caggccagct ggtctttaag agcgacgctt attactgtac tggggatgtc actgcctgga 1021 ccaagtgcat ggtcaagaca cagaatccta gccgaaagga atgggtaact ccaaaggaat 1081 tccgagaaat atcctacctc aagaagttaa aggtcaaaaa acaggaccga atattccctc 1141 cagaaagcag cgccccagca ccactggcac tgcccctctc tgtcacctca gcacccacag 1201 ctgtgaactc ctctgctcca gcagacaagc ccctgtctaa catgaagatc ctgactcttg 1261 ggaagctctc ccagaacaag gacgaagcaa aagctgtgat tgagaaactc ggaggcaagt 1321 tgacaggatc tgccaacaag gcctccttgt gtatcagcac taaaaaggag gtggagaaga 1381 tgagtaagaa gatggaggaa gtgaaagcag ccaacgttcg agttgtgtgt gaggacttcc 1441 tccaggacgt gtctgcctcc actaaaagcc tccaagagct gctctcggcc cacagcttgt 1501 cctcgtgggg ggctgaggtg aaggcagagc ctggtgaagt ggtggccccc aaggggaagt 1561 cagctgcacc ctccaagaag agcaagggtg ctgtcaagga ggaaggtgtc aacaaatctg 1621 aaaagaggat gaaattaact ctgaagggag gagcagccgt tgatcctgac tctggtctgg 1681 aacactctgc acacgtcctg gagaaaggtg ggaaggtgtt cagcgccaca cttggcctgg 1741 tggacattgt gaaagggacg aactcctatt acaaactgca gcttctggag gacgacaagg 1801 agagcaggta ctggatcttc cggtcctggg gccgggtggg cacagttatc ggcagtaaca 1861 aacttgagca gatgccctcc aaagaggacg ctgttgagca cttcatgaag ctgtatgaag 1921 agaagactgg gaatgcctgg cactcgaaaa acttcacaaa gtatcccaag aagttctacc 1981 ctctggagat tgactatggc caggacgaag aggcagtaaa gaagctgacg gtgaagcctg 2041 gcaccaagtc gaagctgccg aagccagtgc aggagctcgt ggggatgatc ttcgacgtgg 2101 agagcatgaa aaaggccttg gtggagtacg agattgacct ccagaagatg cccttgggga 2161 agctgagcag aaggcagatc caggccgcct actctatcct cagcgaggtc cagcaggcag 2221 tgtctcaagg cagcagtgaa tcccagatcc tagatctctc caatcgcttc tacactctga 2281 tcccccatga ctttggaatg aagaagcccc cactcctgaa caacgcagac agcgtgcagg 2341 ccaaggtgga gatgctagac aacctcctgg acatcgaggt ggcctatagt cttctcaggg 2401 gtggctctga cgacagcagc aaggatccca tcgacgtcaa ctacgagaaa ctcaaaactg 2461 acattaaggt ggttgacaga gattctgaag aggccgaggt catcaggaag tacgtgaaga 2521 acactcatgc taccacgcac aacgcctatg acctggaagt gatcgatatc ttcaagatag 2581 agcgcgaggg ggagagccag cgctacaagc ccttcaggca gcttcacaac cggaggctgc 2641 tgtggcacgg ctccaggacc accaactttg ctggcatcct gtcgcagggt ctgcggatag 2701 ccccacctga agcgcctgtg acaggctaca tgtttgggaa agggatctac tttgccgaca 2761 tggtgtccaa aagtgcaaac tactgccaca catctcaggg agacccgatt ggcttaatac 2821 tgctgggaga ggttgccctt ggaaacatgt atgaactcaa gcatgcttca catatcagca 2881 agttacccaa gggcaagcac agtgtcaaag gtttgggaaa aaccacccct gacccttcgg 2941 ccagcatcac cctggagggt gtagaggttc cactgggaac agggatccca tctggtgtca 3001 acgacacctg cctgctgtat aatgagtaca ttgtctacga cattgctcag gtgaatctca 3061 aatacctgct gaaactcaag ttcaatttta agacatccct gtggtaaagt gcgaggggtg 3121 ggctgtgccc agcacccagg gcctaggggg caattctccc tagtgcctct gcaccagaca 3181 ccacaaaacc tcagccatgc tgccgccgaa gggtggcccc ctcaccgaat ctccttagga 3241 agggttttat acagacaggt taaagggctc tggtttcaag tcccttgtcc atgctgcact 3301 ggggcaggcc ggttgtttgt ggtttgtcct accagccaca gctccataga cagcagctgg 3361 cagtagagca aaagttgggg agaggatttt gttgtttgcc tagactagtc ctgagggaag 3421 aaacaccacg tcacagtcac gatgtctgcc ttactggctt ccccagggaa ggaaaaatgt 3481 gcttcctccc tttttttcaa gggttcatct ttgctttaat tttggcaaaa tgttaagcat 3541 ttattttgag ctaaaaataa aagttaattt catactatat agattttctt ttttatcttg 3601 tatgtccccc tcttagtctg ctgagctttt gttttgcttg gttttcagtg atagacatgg 3661 gatagccaaa agaagggact acctgaaacc cctaactggg gcgactgagc ctgtagtgtg 3721 gtcagttcaa agttgcattt gggattctat gtcttccaaa ttgaaccgtc tgaatcagta 3781 cagccaccca aagggctata gttctcaatt aaaatgcaaa tggatatct //