LOCUS AK030371 3433 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male pituitary gland cDNA, RIKEN full-length
enriched library, clone:5330404D19 product:GOLGI RESIDENT PROTEIN
GCP60 homolog [Homo sapiens], full insert sequence.
ACCESSION AK030371
VERSION AK030371.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3433)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5330404D19
FEATURES Location/Qualifiers
source 1..3433
/clone="5330404D19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5330404D19"
/db_xref="MGI:2393188"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="pituitary gland"
CDS 61..1638
/codon_start=1
/note="GOLGI RESIDENT PROTEIN GCP60 homolog [Homo
sapiens] (SPTR|Q9H3P7, evidence: FASTY, 88.8%ID,
100%length, match=1575)"
/note="putative"
/protein_id="BAC26928.1"
/transl_table=1
/translation="MAAQLNVEQLEVSLDGLTLSPDSEERPGAEGAPPQTPPSSAPGN
GLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFGLEELYGLALRFYKIKDGKAFHPT
YEEKLKFVALHKQVLLGPYNPDTSPEVGFFDVLGNDRRREWAALGNMSKEDAMVEFVK
LLNKCCPLLSAYVASHRIEKEEEEKRRKAEEERRQREEEERERLQKEEEKRKREKEDR
LRREEEERRRIEEERLRLEQQKQQIMAALNSQTAVQFQQYAAQQYPGNYEQQQILIRQ
LQEQHYQQYMQQLYQVQLAQQQAALQKQQEVVMAGASLPASSKVNTAGASDTLSVNGQ
AKTHTENSEKVLEPEAAEEALENGPKDSLPVIAAPSMWTRPQIKDFKEKIRQDADSVI
TVRRGEVVTVRVPTHEEGSYLFWEFATDSYDIGFGVYFEWTDSPNAAVSVHVSESSDE
EEEEEENVTCEEKAKKNANKPLLDEIVPVYRRDCHEEVYAGSHQYPGRGVYLLKFDNS
YSLWRSKSVYYRVYYTR"
regulatory 3416..3421
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3433
/note="putative"
BASE COUNT 959 a 707 c 871 g 896 t
ORIGIN
1 gagcaggaag tcgatacgtg gccgccgcct gtccccgccg aggaggcgct gcgagcggag
61 atggcggcgc agctgaacgt agagcagctc gaggtgtcgc tcgacggtct cacgctgagc
121 ccggactcgg aggagaggcc cggcgcggag ggggccccgc cgcagacgcc gccgtcctcg
181 gccccgggga atggactggg ctccggcgcc tcggggcagc agcgggagcc cggggaggcg
241 gcggctgagg gcgcggccga ggaggcgcgg cggatggagc agcactgggg ctttggcctg
301 gaggagcttt acggcctggc gctgcgcttc tacaaaataa aagatggcaa agcctttcat
361 ccaacttatg aagaaaaact gaagttcgtg gcactgcata agcaagttct tttgggccca
421 tataacccag acacgtcccc tgaggttgga ttctttgatg tgttggggaa tgataggagg
481 agagaatggg cagctctggg aaacatgtcc aaggaggatg ccatggtaga gtttgtgaag
541 cttctaaata agtgttgtcc tctcctctcg gcatatgttg cgtcccacag aatagagaag
601 gaagaagaag agaaaagaag aaaggcggag gaggagcgaa ggcagcgtga agaggaagaa
661 cgagagcggc tgcaaaagga agaagagaag cggaagcgag agaaggaaga ccggctgaga
721 cgggaggagg aagagaggcg gcggatagag gaagagaggc ttcggctgga acagcaaaag
781 cagcagataa tggcagcttt aaactcgcag actgccgtgc aattccagca gtatgcagcc
841 cagcagtatc cagggaacta cgaacaacag cagattctca tccgccagct gcaggagcag
901 cactatcagc agtatatgca gcagttatat caagtccagc ttgcacaaca acaggcagca
961 ttacagaaac agcaagaagt agtgatggct ggggcatcat tgcctgcatc atcaaaggtg
1021 aacacagctg gagcaagtga tacactgtca gttaatggac aggccaaaac ccacactgaa
1081 aattccgaaa aagtccttga gccagaagct gcagaagaag ccttggaaaa tggaccaaaa
1141 gactctcttc cagtgattgc agctccatcc atgtggacaa gaccacaaat caaagacttt
1201 aaagagaaga ttcggcagga tgcagattct gtgattacag tacgtcgagg agaagtcgtc
1261 accgtccgag tcccgactca tgaggaagga tcatacctat tttgggaatt tgccacagac
1321 agttatgaca ttgggtttgg ggtttatttt gaatggacag actctccaaa tgctgctgtc
1381 agtgtgcatg tcagtgagtc cagtgacgag gaggaggagg aggaagaaaa tgtcacttgt
1441 gaagaaaaag caaaaaagaa cgccaacaag cctctgctgg atgagattgt acctgtgtac
1501 cggcgggact gtcacgagga agtatatgca ggcagccacc agtatccagg gaggggagtc
1561 tatctcctca agtttgataa ttcctactct ctgtggaggt ccaagtccgt ctactacaga
1621 gtctattata ctagatagag ctgctgttcc agggtcggga gtctagggtt gagcacaaca
1681 tgacgtttaa tttcctttga cttttgtggc gcataggagt ccgtgtttat cttctcgatt
1741 ttgttctgag ggtttatgaa ctcattgaga accaggattc cttgagactc tttagcatta
1801 gtgctctgag gttaaaagca gttcggaaga ctcatctagc ccttgggtgc tgaccagcag
1861 agctgctagt ggatattgga gttacatgag ctacgtgtta atattcagtc tccagaataa
1921 acgtcccagc gttgccctga cctggctgga gggcgcattg ctgtctgtgc ctgtgttgtg
1981 cacagccaca gttagtaact ggggaagctt ctgtactagt ctccttcaac gcagctggct
2041 ttgactgagt gctttgacag tttgagactt caccaagtat agtagaaaaa caaatggcct
2101 caacttgatc ttacctgagt aaccaaggct gcttttgctt tgggtacagc tatttagtta
2161 gttgtgttac aaagaattat tttctgagag aatcttaaac ttagaatatt cagatgcagt
2221 agatactggc gtgtggagat tcacagacga cctcagcacc catcccacca ggtccctgga
2281 ctcacggcct ttccttcatt tgccattcac attgctgctc acaaaacaga actcggtgac
2341 tttgttttga tatagttttg tggaccatct caaattaaaa ctattttctg taaaaaatct
2401 atagccagga gttttataaa ctcacctggc acctactgag ctaaaatatg caaaatctga
2461 actaaaatat gcaaaatcac tttaatataa tttgacattt gaggagtacc attgcactaa
2521 caggaaatca ctgccggaga cagcccacat ttccttgtag ttgttattag ggcacaaacc
2581 actccacagt cccagtgtgg agtcacagtc tagagagaat tggaaatgca cgtgcttaaa
2641 tgatacagct ttaatctgta ttatgactgc tggtggtaag aggaatatct ttaaatttct
2701 tatgaaaaca aatccacatt cattatttca catttgtcta agaggttaag tatctgaagg
2761 gagggtagtg tagatagcaa atgacagaga cagtacacac ctagtgtatt gtcactgaag
2821 tcttaggttt aactttgaca tcacaggtcc cttccagggg taccactggg tagctgcagt
2881 gtgcaccggt cactacattc aggctatttg aggttttcat atgctgcatt tctttgtttt
2941 taacacctgg ttttataggt tctctttcgt ttgttaagaa actggattct tttctcctaa
3001 ccagtgctta atttgtgttt ttggattttc tttcagaagt agtcaaatgt ctatgctgtt
3061 acatccagaa tattcattag gctgccccac agctcttctg tatatataga gaccacagag
3121 ttaggatttt ttttaatgag aaagatactg tatttaaaat gtaaaataaa cttttaaaaa
3181 gcaagcacta atatatattt ctttcagcct ttgattacag ttttgtcctt gcacatgtta
3241 agataaatta tcttctaaaa ccttgttctt gggagcagtg aatgtcactt tacatggctg
3301 tttctgtcac atgttcatat ctgaacattt ttggttataa cttttttatt gcctttggct
3361 gttgattagt acaagtgcaa tttcaaaaag atcttgaaag taatatattt aatcaattaa
3421 aatgtttctc tgt
//