LOCUS AK029476 1298 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
library, clone:4833444B13 product:unclassifiable, full insert
sequence.
ACCESSION AK029476
VERSION AK029476.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1298)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4833444B13
FEATURES Location/Qualifiers
source 1..1298
/clone="4833444B13"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4833444B13"
/db_xref="MGI:2391629"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
misc_feature 1..1298
/note="putative"
/note="unclassifiable"
BASE COUNT 342 a 227 c 286 g 443 t
ORIGIN
1 aaaaagagag gggcgtacac agttggaagg tggaagggtt cctgtccatg cagttgcctt
61 tcaagagcct gagaatgatc ctcgtaactg ctgttattta tgggctgttc agtccacaca
121 agataggtca gtatgcctgt gcttctaaga attcatctcc taaggctgag gatgtagcag
181 caaaggagtc acactgcaac agtttgtttc ttttgaaatg tttgaattat attgccactg
241 ccatgtactt tggtactaca ccttgtgcta tgtgtgcatt gtatctgatt catttggtac
301 aatgacttca tatccctttg taaagtcctg ttcttgtgta gggcttgatc tttataagta
361 agagtgtgga ggacatgtct ccaaaggcat gttctctgta gttgccacgg gatgattcta
421 ttcatatttc tcttggccag gacttagtgc aaaggaaggt aggaaatgct gttgatgttt
481 taggtagcac ttactgaagg aggaatatct gagaaagaat attgggttaa aaattgtggt
541 agactatacc acatgctgca ttagttacat tttatacaaa caaaatacag ctgcggtttg
601 ccatatgcat tttatgtgta tgtaaaaaat tgggaggatg agatgtaagc tgcatgtttt
661 ggtttcttga gttaatttct ctttcttcag tgaaggggat gttttgagtt tgcatctgct
721 tcagctggct tttggtgata gaaaatgttt ggcatcaggg caaattttat atgaggtaag
781 tggttattag tctattatcc ttttttctat ttggtgtttt tttattgtac tgttactctt
841 atgttcaagt taataactgt attcttcatt agtggaagaa acaatagttt agtggcctga
901 gctttctaag ggtttccacc tggtttgctc ttgtagcact cttaactttt tctaggtata
961 ttcttccccc atagcagaga agctggacta gattacctag ttgtaatccc aggagctatt
1021 ctcctaactt tgttctgaca taccaaccaa gcacttcagg gtgtatgcat caaaatgctc
1081 agatagcata ttttcctaac taatattttc agtattaaag aggagtgttg gcctagagag
1141 atggctcagc agttaagagc actgactgct cttccagagg tccttagttc aattcccagc
1201 aaccacatgg cggctcacaa ccatctgtaa tggaatctga tgccctcttg tgtgtctgaa
1261 gacagctaca gtgtactcat ataaataaaa taaatcct
//