LOCUS AK028462 3520 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
library, clone:4631411J16 product:hypothetical protein, full
insert sequence.
ACCESSION AK028462
VERSION AK028462.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3520)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4631411J16
FEATURES Location/Qualifiers
source 1..3520
/clone="4631411J16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4631411J16"
/db_xref="MGI:2390371"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="skin"
misc_feature 1..3520
/note="hypothetical protein (evidence: rsCDS)"
/note="putative"
BASE COUNT 825 a 760 c 881 g 1054 t
ORIGIN
1 ggagcgctgt atggctgctc tgtctccttt ctgtcctgct aattttttta agagaccttt
61 cctggaaaag tgtaatcata gtgaagattg tggttttgag gttcacagtg cagaaccagt
121 taaactggtc tctgcctttg gattggatgg atgggtggcg gtcatcaaga aggcctagcg
181 ctgaactcac gctgtttacc gcagggctgt ggaggctcca tgtgtgattt ggaaataact
241 gagagcaagg agggctttgg aagtttggag ctgacctctc atggtctaga tggaacacca
301 ctggggtgtg ttggtctgga tggtgtgact ccatggcttt ccttccacat atgaactgtg
361 cgtaagagag aggtgaatct cggtctggtc ttctaagtca tttttttaaa cattaaaaaa
421 tatttttgag tttatattaa aattcagtat ttctccctgc ccttcttcct cccaagctct
481 cctgttatcc ccccttccct cttttaagtt catggccccc gttctcatta attgtggtta
541 catccctaga tgtatgtgtg tagacataca tatttctata tatattctgc tcagtctgtc
601 actgaacaca tgacacattt tcaaggctga ccattcggta gtggatagcc agttggtgag
661 ctctccccgg agaagactct tcctcccacg ctcagcagtc ctcagaagga gtggtcctga
721 aaccctaggg tgcacgagaa gccagcggac actggtttag gaagccgtgg ggctcatttt
781 gttctctccc gtcctcaggt tgttctgtgg gaacaggagc ggtcttttta tgtttggtcg
841 ggagcttggc ttctttacta gaaaagccta acatctctac cgtagggatt gttttttctt
901 tttaaaaaaa gtgcgtgtgc gtgtgcgtgt gcgtgtgtgt gtgtgtgtgt gtgtgtgcgc
961 gcgcgcacgc acacacgcac atatgtatgt atgtatgcat accacctgca tgcaggtgcc
1021 tgcagtggcc acaagagtgt gttagatccc ctggagctgg aactacaggt ggttgtgagc
1081 tacctgggct accagtcaaa ctcaggttct ctggcaagag cagtgtatac tcatgaccac
1141 tgagctgtct ctttaaaccc ctccataaac tttattttaa ataaaattgt ctctttgtgt
1201 tgagtgttca ccacccttgt gtgtgaatgg cggtgcattt gtgtggaggt cagagactga
1261 tagataacct tggtgttgct gggtgcaagc gccttttacc ttgaggtaca ggatctctgt
1321 tgactgcaga tagtcagaca caggctaact ggcccgtgaa cttggcttct gtcactgcct
1381 tcctcttgcc gtaggaacac tagacttgca gacacgctcc atccagcttt atgtgagcac
1441 tgggcattca agctaagtgt ttcttgcttg ttatacaagt tgattcatga gctgaacccc
1501 accaaccgcc actcagatgt ctcggaacag gtttctgaaa caaagtttat cattgagtgc
1561 aaatgagaag cagccaggcc atgatgaaat ctttctaacc ttgtgggaat ctctcttggt
1621 tgggtgcagt gatgacaagc cattcctgcc tgcttgtctg ccgagaggtt gcatggtttt
1681 gtgacagggc ttgtcatcct ttgtaaacac tgtgttcttt tatttgtggc tcgctaccac
1741 ctgcgtgcct gttgtgggaa gtggagaaga ttgtgtgctg ctccagttct gagggaatcc
1801 acgttctccc ctttgattga ttctcttcag gtgattactg cttcctagaa attacccttc
1861 tgcccttccc ggcaaagaag agctgttagt ttcttaatgt catgtgattc gactatggag
1921 tacaaattct gcttctctca tgagatacat gttgtatttc ttcatactct gtgtgcacgc
1981 acgcacaggt gaacacaagc aaacatttcc agactactat cttcttgagt agttaccatg
2041 ttgttaagca tttatagact aaattttgta gacatttgaa gcatcttgat ttccaatatt
2101 tttttttaaa gggccagtga ggtaactatg gcagcagaca aaagccaata caaggttcag
2161 agacccagct catgggttct gagtctgtcc tcatactcct ttctttgttc taagaggccc
2221 aggccaggga ttagcaactt gtttgttgtt ggctattgtg tattagaaat cgctacaata
2281 tgtgtagaat aatatgcttg aggttctgtt ttatttggtt agataggatg catctgttta
2341 gcatgcacac ctgtaaggga gtgggtcctc tctctaaggc ttactttctc tggtttataa
2401 gatgagggaa gtggtacttg ggttatgtac tgtgaggagc acaggcattt gcccaagaca
2461 cacctgtcca ccaagtgccc cccagagcca gcctgggctg ctgtctactc tgctcttcca
2521 gactacaagg atgtaccggc cttaaggtca ccattgtgga gctaaggttc catgacctgg
2581 cacttgtctg tactgtcggg tagaaaacat gtatttttcc caagttaagc agctgcttag
2641 tttcataaag taaatgaaaa ccttgtgtac tcttgcatct accttgaagt tggatggtgc
2701 cgaacaacac agactttaag gcggggtggg gggagcgaga gcgagcgcac atgcaccatg
2761 agcagaaaca gggcgacatt atggtgaccc cctaccaggt gtgcagtagc agcaaggatt
2821 gtgagggtga attgagatga gtctaacact gtgatggagc tgggcatgtg taagcctaga
2881 atttgagagg ctgaggcaga agggccagga ctttgaggct agcctgggtc tcaagaggtc
2941 ttgtctcaaa aaacccaaaa ccaattagcc aaagaaacct gttgtggagg acatggcata
3001 aggcagtgtt gggaccgtct ctgtgggcta agagaccgac agaggctcac gctcttcctt
3061 cttggatgtg ttaatgtatc gtccaaattc ccactgccgt aaaagaggcc atcagacctt
3121 ccctgtcagt ggacatagag aagtgttaga tattttaagg agggctaggt gaggtctagg
3181 tagagatgat gcaacatgca tcccttaatt aggccttgat gctaggagag gctgccctta
3241 cttacatcac ctgctctgcc cttctgtggg ccaggccagg cttcctcaaa ggtggagaca
3301 ggctatcatg gtgttccgac ttctaacact ctatagtgcg attttccttg gaacgtgtgt
3361 tacgtattgc atatttgcaa gggcaaggtg gcaattttga cttggttaga aacactgaag
3421 gagagctgga aaacaggccg ttctccttag cttctatcac cgtcaagcct aggactggtt
3481 ttgtttttct taaaaaggaa acattaattt tcctaaaatt
//