LOCUS AK018392 1648 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430407O11 product:unclassifiable, full insert sequence. ACCESSION AK018392 VERSION AK018392.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1648) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=8430407O11 FEATURES Location/Qualifiers source 1..1648 /clone="8430407O11" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:8430407O11" /db_xref="MGI:1904035" /db_xref="taxon:10090" /dev_stage="16 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="lung" misc_feature 1..1648 /note="putative" /note="unclassifiable" BASE COUNT 461 a 318 c 321 g 548 t ORIGIN 1 tttcggaaga ctcatctagc ccttgggtgc tgaccagcag agctgctagt ggatattgga 61 gttacatgag ctacgtgtta atattcagtc tccagaataa acgtcccagc gttgccctga 121 cctggctgga gggcgcattg ctgtctgtgc ctgtgttgtg cacagccaca gttagtaact 181 ggggaagctt ctgtactagt ctccttcaac gcagctggct ttgactgagt gctttgacag 241 tttgagactt caccaagtat agtagaaaaa caaatggcct caacttgatc ttacctgagt 301 aaccaaggct gcttttgctt tgggtacagc tatttagtta gttgtgttac aaagaattat 361 tttctgagag aatcttaaac ttagaatatt cagatgcagt agatactggc gtgtggagat 421 tcacagacga cctcagcacc catcccacca ggtccctgga ctcacggcct ttccttcatt 481 tgccattcac attgctgctc acaaaacaga actcggtgac tttgttttga tatagttttg 541 tggaccatct caaattaaaa ctattttctg taaaaaatct atagccagga gttttataaa 601 ctcacctggc acctactgag ctaaaatatg caaaatctga actaaaatat gctcaatcac 661 tttaatataa tttgacattt gaggagtacc atgcactaac aggagatcac tgccggagac 721 agcccacatt tccttgtagt tgttattagg gcacaaccta ctccacagtc tcagtgtgta 781 gacacagtct agagagatat ggaatgcacg tgctcaaatg atacagctct aatctgtatt 841 atgactgctg gtggtaagag gaatactata taattcttat gaaaacaaat ccacattcat 901 tatttcacat ttgtctaaga ggttaagtat ctgaagggag ggtagtgtag atagcaaatg 961 acagagacag tacacaccta gtgtattgtc actgaagtct tgggtttaac tttgacatca 1021 caggcccctt ccaggggtac cactgggtag ctgcagtgtg caccggtcac tacattcagg 1081 ctatttgagg ttttcatatg ctgcatttct ttgtttttaa cacctggttt tataggttct 1141 ctttcgtttg ttaagaaact ggattctttt ctcctaacca gtgcttaatt tgtgtttttg 1201 gattttcttt cagaagtagt caaatgtcta tgctgttaca tccagaatat tcattaggct 1261 gccccacagc tcttctgtat atatagagac cacagagtta ggattttttt taatgagaaa 1321 aatactgtat ttaaaatgta aaataaactt ttaaaaagca agcactaata tatatttctt 1381 tcagcctttg attacagttt tgtccttgca catgttaaga taaattatct tctaaaacct 1441 tgttcttggg agcagtgaat gtcactttac atggctgttt ctgtcacatg ttcatatctg 1501 aacatttttg gttataactt ttttattgcc tttggctgtt gattagtaca agtgcaattt 1561 caaaaagatc ttgaaagtaa tatatttaat caattaaaat gtttctctgt aagtcgtcga 1621 tgtttctgtt aatacagttt cctgaagc //