LOCUS AK018249 1671 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
enriched library, clone:6330571G21 product:epoxide hydrolase 1,
microsomal, full insert sequence.
ACCESSION AK018249
VERSION AK018249.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1671)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6330571G21
FEATURES Location/Qualifiers
source 1..1671
/clone="6330571G21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6330571G21"
/db_xref="MGI:1897915"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="medulla oblongata"
CDS 84..1451
/codon_start=1
/note="epoxide hydrolase 1, microsomal (MGD|MGI:95405)"
/note="putative"
/protein_id="BAB31132.1"
/transl_table=1
/translation="MWLELILASVLGFVIYWFVSRDKEETLPLEDGWWGPGSKPSAKE
DESIRPFKVETSDEEIKDLHQRIDRFRASPPLEGSRFHYGFNSSYLKKVVSFWRNEFD
WRKQVEILNQYPHFKTKIEGLDIHFIHVKPPQLPSGRTPKPLLMVHGWPGSFYEFYKI
IPLLTDPKTHGLSDEHVFEVICPSIPGYGFSEASSKKGLNSVATARIFYKLMSRLGFQ
KFYIQGGDWGSLICTNIAQMVPNHVKGLHLNMSFISRNIYSLTPLLGQRFGRFLGYTE
KDLELLYPFKEKVFYNIMRESGYLHIQATKPDTVGCALNDSPVGLAAYILEKFSTWTK
SEYRELEDGGLERKFSLEDLLTNIMIYWTTGTIVSSQRFYKENLGQGVMVHRHEGMKV
FVPTGYSAFPSEILHAPKKWVKVKYPKLISYSYMERGGHFAAFEEPKLLAQDIRKFVS
LAELQ"
BASE COUNT 402 a 453 c 427 g 389 t
ORIGIN
1 aggctcagga ggagtttgag agtggaggaa ctgcacacca gccgccgcgg gagtaggaac
61 ccgagagcga ccctgacaga gtcatgtggc tggaactcat cctggcttct gtgctgggct
121 ttgtcatcta ctggtttgtc tcccgggaca aggaggagac cttaccactt gaagatgggt
181 ggtggggccc agggtcaaag ccatcagcca aagaagatga gagcatccgg cccttcaagg
241 tggaaacatc agatgaggag atcaaggact tgcaccagag gatagatagg ttccgggcat
301 ccccaccttt ggagggcagt cgcttccact atggcttcaa ctccagctac ctgaagaaag
361 tggtgtcctt ctggaggaat gagtttgact ggaggaagca ggtggagatc ctcaaccaat
421 acccacactt taagaccaag attgaagggc tggacatcca cttcatccac gtgaaacctc
481 cccagctgcc ctcaggccgc actccaaagc ccttgctgat ggtgcacggc tggcctggct
541 ccttctatga gttctacaag attatcccac tgctgacaga ccccaagacc cacggcctga
601 gtgatgagca cgtgtttgaa gtcatctgtc cctcaattcc tggctatggc ttctcagagg
661 catccagcaa gaaaggttta aattcggtgg ccactgcgag gatcttctac aagctgatgt
721 cacggctggg cttccagaag ttctacattc aaggcggcga ctgggggtct ctcatctgca
781 ccaacatagc ccagatggtg cccaaccacg tgaaaggttt gcacttgaat atgtctttca
841 tttcaagaaa catttattcc ctgacccctc tcctgggcca acgttttggg agatttcttg
901 gctacacaga gaaggatctg gagctcttgt acccattcaa ggaaaaggtt ttctacaaca
961 tcatgaggga gagtggctac ttacacatcc aggccaccaa gccggacact gtgggctgtg
1021 ctctgaatga ctctcctgtg ggcctggctg cctacatctt agagaagttc tccacctgga
1081 ccaagtcaga ataccgtgaa ctggaggatg gaggcctgga gaggaagttc tccctggaag
1141 atctgctgac taacatcatg atctactgga cgacaggaac cattgtctcc tcccagcgct
1201 tctacaagga aaacttgggc cagggtgtca tggtccatag acatgagggg atgaaggtct
1261 ttgtgcccac tggctattca gccttccctt ctgagatcct gcatgcccca aaaaagtggg
1321 tgaaggtcaa gtaccccaaa ctcatctcct attcctacat ggaacgtggg ggccactttg
1381 ctgccttcga agagcccaag cttctggccc aggacatccg caagttcgtg tccctggctg
1441 agctgcagtg atgacgctac acaccaacca tggctttagc agcagccctg gttccttccc
1501 agtcatactt atggaagatg tgcccttcca gaggaataag tttgttccct gaccacactg
1561 ggggacccag acttcaaccc cacagagtcc tctcttacca cccccatatc gtcgccccac
1621 tgcatagctg tgttaagcta catggcttta atgataaatg ggtttatttc t
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