LOCUS AK017899 1753 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male thymus cDNA, RIKEN full-length enriched
library, clone:5830405M20 product:similar to RIBOSOMAL PROTEIN S6
(FRAGMENT) [Sus scrofa], full insert sequence.
ACCESSION AK017899
VERSION AK017899.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1753)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5830405M20
FEATURES Location/Qualifiers
source 1..1753
/clone="5830405M20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5830405M20"
/db_xref="MGI:1907963"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="thymus"
misc_feature 1..1753
/note="putative"
/note="similar to RIBOSOMAL PROTEIN S6 (FRAGMENT) [Sus
scrofa] (SPTR|Q29198, evidence: FASTY, 71%ID,
65.7%length, match=201)"
BASE COUNT 455 a 369 c 407 g 522 t
ORIGIN
1 tagggtggaa ggagagagac atatcccaca aagttgtcct ctaatgtcca catgtgaact
61 gtggcgtgta tgtgctcgca caagcacaca cacacacaca aagtataaat ctacaacagt
121 gaaattccac tgtttccctg gtaaccacta atagcgtaat gcatttcttt ctattgattg
181 tttggatttc ccctcctgga catttcctgt gtcctttgct tattccaatt aaacttcttt
241 tggagttact ttatttgttt gagtgttttg cctgcatgta tgcttgtgca ctacacacgt
301 acacagtgtg cacagaggtc agaagagggt atcggataca ctgagaagac ttacagcagc
361 tgccatgatg ggacctgaac ctctgcaaga aaactaagct ttctcaacca tcagttaaat
421 aattttgtat ggttttatca tttttttaat tcagtttaag ctgggtgtgg tagtacatgc
481 cttaaatcca tcattaggca gaggcaagag atctctggat ttgaggccag actagtctct
541 gtaacaagtt ctagtatagc catgtctacc tagactgtcc ctaaataagt aaataagtaa
601 aaatagttta catagtttta cataaagggc tgacaaatgg ttctgggtgg ctcacctacc
661 atcaagctta agacctgagt tcaatcccca ggactagatt ttccaaggtg gggattccca
721 agagactgtc ttctgactcc cacattcaaa ccatggcgtg tgtgcacacc tgcacacaaa
781 aggaaaactt taaaaaacct ttcttcccaa ttctagtctg tgtcttgcgt gtgtacacgg
841 gtgttttttt ttttttttat tccttgtgga tttttgctta tttccatatg tatgagtttc
901 tgtggtgttg gatttgtgtt atatatttta atttcatttt taataattgt gcctgtgggg
961 atgtgtgccc tcagaggtca gaagaggaag tcaggtcttc tagagttgga ctcacagggg
1021 agctgttttt cttctagtca ctgttctgtt gctgcgaaga gacaccatgg ccaaggttgc
1081 ggaaatctct gagctacaga tacagataga ccgttgaggt acagcagtcc cagaaccttg
1141 ctgcaggatg tggacaagcg aaccctttct ccatttggac attgcaccaa taagctggca
1201 gaggaactgg tgccccctgc ctgctgtctg ttaccatggt ctcctccaat tccaacaaga
1261 aagacagggt ttctctgtgt agccctggct gtcctggaac tcactctgtg gaccaggctg
1321 gcctggaatt cagaaatccg cctgcctctg ccttgcgagt gctggaatta aaggcatgaa
1381 tgggaactat gggaactttg cattttctct gagaagcaaa tggccacaga agtagctgct
1441 gatgctctgg taaagagtgc aagggctgtg tggtccaaat cagtaatgga aatgacagac
1501 aagacttccc catgaagcaa ggcttcttga ctcagagagt acctgctgtt gagtaagggg
1561 catgcttgct gtggaccaag gagaactgga gagggggggc aagtctgtct gtgaatgtca
1621 gtctgaagtt ctcaacttcc tggagagaat gtatgtgcca cgttttcact attcattcat
1681 ctgtccgtgg acaacttggt tgattccggt tctgcagtga ataaagccac aacaaacgtg
1741 gacatgcaaa atc
//