LOCUS AK014605 3969 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
library, clone:4632432J16 product:hypothetical ABC1 family
containing protein, full insert sequence.
ACCESSION AK014605
VERSION AK014605.2
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3969)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4632432J16
FEATURES Location/Qualifiers
source 1..3969
/clone="4632432J16"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4632432J16"
/db_xref="MGI:1896736"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="skin"
CDS 100..2037
/codon_start=1
/note="hypothetical ABC1 family containing protein
(InterPro|IPR004147, evidence: InterPro)"
/note="putative"
/protein_id="BAB29459.2"
/transl_table=1
/translation="MAAMLGDAIMVAKGLAKLTQAAVETHLQNLGLGGELLLAARALQ
STAVEQFSMVFGKVQGQDKHEDSYATENFEDLEAEVQFSTPQAAGTSLDFSAASSLDQ
SLSPSHSQGPAPAYASSGPFREAGLPGQATSPMGRVNGRLFVDHRDLFLANGIQRRSF
HQDQSSVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLADFGGLA
VGLGIGALAEVAKKSLRSENSTGKKAVLDSSPFLSEANAERIVSTLCKVRGAALKLGQ
MLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNSDLGPHWRDKLEYFEERPFA
AASIGQVHLARMKGGREVAMKIQYPGVAQSINSDVNNLMAVLNMSNMLPEGLFSEHLI
DVLRRELTLECDYQREAAYAKKFRELLKDHPFFYVPEIVDELCSPHVLTTELISGFPL
DQAEGLSQEVRNEICYNILVLCLRELFEFHVMQTDPNWSNFFYDPQQHKVALLDFGAT
REYDRSFTDLYIQVIRAAADQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILGEA
FASEEPFDFGTQSTTEKIHNLIPVMLKHRLIPPPEETYSLHRKMGGSFLICSKLKARF
PCKAMFEEAYSNYCRMKSGLQ"
regulatory 3948..3953
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3969
/note="putative"
BASE COUNT 963 a 1010 c 1072 g 924 t
ORIGIN
1 gagaagcgga gagtgtgcgg agcgctcgca gcggggcgag cgcgcggagg cgttgcgttg
61 cggacggagg agctaccttc ctgcagcccg ctctgaagga tggctgctat gttgggggat
121 gccatcatgg tggccaaagg ccttgccaag ctgacccaag cagcggtgga aacccacttg
181 cagaacctgg gccttggtgg ggagctcctc ctggcggcca gggccctgca gtctacagct
241 gtggagcagt tcagcatggt cttcgggaag gtgcagggtc aggataagca tgaagattca
301 tatgccactg agaactttga agatctggaa gccgaagttc agttctcaac accacaggca
361 gctggaacct ccctggactt ctctgcggcc tcttccctgg accagtcact gtctccatcc
421 cacagtcagg gaccggcccc tgcctatgct tccagtgggc ctttcaggga agctgggctc
481 cctggacagg ccacctctcc tatgggcaga gtcaatggaa ggctctttgt agatcacaga
541 gacttgttct tggccaacgg catccagcga agatccttcc accaggacca gtcctccgtg
601 ggaggcctca cggctgaaga cattgaaaag gcccggcagg ccaaggctcg ccctgagagc
661 aagccacaca agcagatgct cagtgagcgg gctcgggagc ggaaggtgcc agttacccgg
721 attgggcggt tggccgactt tggaggtctg gctgtaggtc tgggaattgg ggcgttggct
781 gaagttgcca agaagagtct gcgttctgag aactccacag gaaaaaaagc cgtgctggat
841 tctagcccct tcctgtcaga ggcaaatgca gagcgcattg tgagtacact gtgcaaggtg
901 cgtggggccg cactgaagct gggccagatg ctgagcatcc aggatgatgc cttcatcaac
961 cctcacctgg ccaagatctt tgagcgggtg aggcagagtg ctgacttcat gccactgaaa
1021 cagatgacga aaaccctcaa cagcgacctg ggcccccact ggagggacaa gctggagtac
1081 tttgaagagc ggccctttgc agcggcctcc atagggcagg tgcacctggc ccgcatgaag
1141 ggtggccgtg aggtggccat gaagatccag taccctggtg tggcccagag cattaacagt
1201 gacgtcaaca acctcatggc tgtgctgaac atgagtaaca tgcttccaga aggcctgttc
1261 tctgagcacc tgattgatgt gctgagacgg gagcttaccc ttgagtgtga ctaccagcgg
1321 gaggctgcct atgccaagaa gttcagggaa ctgctgaagg accatccctt cttctatgtg
1381 cctgagattg tggatgagtt gtgcagtccc catgtgctga ccacagagct catatcaggc
1441 ttccccttgg accaggcaga agggctgagc caggaagtga ggaatgagat ctgctacaac
1501 attttggtgc tgtgcctgag agagctgttt gagttccatg tcatgcagac tgaccccaac
1561 tggtccaatt tcttttatga ccctcagcag cacaaggtgg ctctcctgga cttcggcgca
1621 actagagaat atgacagatc ctttactgac ctctacattc aggtcatccg ggccgctgct
1681 gaccaggaca gggaggcagt gctaaagaaa tccatagaga tgaagttcct taccggttat
1741 gaggtcaagg ccatggagga tgctcacctg gatgctattc tcatcctggg ggaggccttt
1801 gcctccgaag agcccttcga cttcggtacc cagagcacta ctgagaagat ccacaacctg
1861 attcccgtca tgctgaagca ccgcctcatc ccacccccag aggagaccta ctctctgcac
1921 cgcaagatgg gtggctcttt cctcatctgc tctaagctga aggcccgctt cccctgtaag
1981 gccatgttcg aggaagcgta cagtaactac tgcaggatga agtctgggct gcagtaggtg
2041 aggtgtggtc caggttaact aggggccatg ccctccttca ggctcagtca agcagaggga
2101 ggacgttgaa agggagccac ggcctctatg aataggaaga gagcgttgcg tagaccctcc
2161 tattgcttct gtactgtcca gacaaaaagg caggcttctt ttgccatctc ctccctgctg
2221 tggatgtaca accaggaaca ggagcaatgc agtactaaac tcaacacagc cacctttggg
2281 gtctagttgg ccatgggaat gaattgtgtg tttctgggtg agcttatgtc cctgcccttt
2341 gccaccccag cctgtggcct ggagctagaa gctcaggaca gcagggtagc caccctagct
2401 cagtctcagc atggacaaca gaccctttta aaagcagggc tgacattgga tgagcagcag
2461 ggctccagca tgccccagga gagggagcta tcaccccacc ccaggggagc gacacaggct
2521 ctttgtttgt atgtcttgta attacacatt catacctttg cgttcaataa agaagtgcgt
2581 tggggactgc catttcctat gcgttccgtg aatcctggga aggaggtggc cccacttatg
2641 acctggatgt gtggtctttg tctgtctctt gctcttgatg gggacagaac atggcaacat
2701 aggcagatat taagcatttc catgtatgtg tgtctctgac tcaggacttt aatggcactg
2761 gagattaagc ctaatgcctt gcagagtgac ttgagtgctc taccaccggt tggttgtacc
2821 ctgagccctt ttacttttgg gatgggatct catcaagttg ctcaggcaag ccttgaactt
2881 gtaatcctcc tgcttaactc cccctcaccc caagtaatta ggatcacaag tttaagccac
2941 caagcttctt aggcatttag agaaaacagc ttgtggggtt cagtggctac agaacagaca
3001 ctgagatctg gatctgggac aggaacagtg tgcccataca acccatgcat gctgtctgtc
3061 ctggctaggg gcctgggtca ctgccacccc tgcaccacac taggctcacc gagcttaagt
3121 tttactgcgt ggtgttcttg tccatttctt tgtggaattt ttgccaagtc ttggtcttca
3181 cagatgctgc cttggaggcc cagtgcgact tgaaagatct gaaagagtct caatggctaa
3241 gagggtgatg atttcagttg caggtttggg gtctctgata aggtcaccca accttgcctg
3301 tgtgtcagct gcaccattct aacagaacag atccaactcc tacgttaatg ctgcagacag
3361 acaaccccga gtctcaagcg ccagtggagt gtgccctggg ggcctaaagc agtgcccggg
3421 gagttcttat cagagaaagg gagttgagca cttccatgga tttgaatgtt atttttacct
3481 gagctccagg acccgatcaa accgacctgt gtcctctggg atagagaaga ggtccagagg
3541 gagatcagcg agccaagaat gcctcacact ctccacacgg gaagaaatag aatactcaat
3601 gctgacagtt ccttatttta ttgcagaaca tcaaagtctg gttaattagg tgataccaac
3661 ataaaatatt ggtgagaaat cctttgttac atttttgacc accccacctt aaatagttct
3721 gtgcaaaaga atccatgtta tagtttggta gcagatactg tcaggaaatt ccctaggaca
3781 tctagggaca aaaccaaacc aaatgagtgc taagaggcca aagcagtatt ttcccttcca
3841 cacacacaca cacaggtcat aattttttga acaaaaatga ttacactgag gccatgcaaa
3901 actgtacaat aatattacaa tgagaaaaaa atcctaaaaa tttataaaat aaatgctgtt
3961 attctatcg
//