LOCUS AK013789 1993 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male hippocampus cDNA, RIKEN full-length
enriched library, clone:2900075G08 product:hypothetical Cornichon
protein containing protein, full insert sequence.
ACCESSION AK013789
VERSION AK013789.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1993)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=2900075G08
FEATURES Location/Qualifiers
source 1..1993
/clone="2900075G08"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:2900075G08"
/db_xref="MGI:1905890"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="hippocampus"
CDS 796..1335
/codon_start=1
/note="hypothetical Cornichon protein containing protein
(Pfam|PF03311, evidence: InterPro)"
/note="putative"
/protein_id="BAB28996.1"
/transl_table=1
/translation="MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQ
CNPVHARERLRNIERICFLLRKVRGVPPGGRRKGRRERGQQLVLPEYSIHSLFCIMFL
CAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPPVVMNADTLSYCQKEAWCKLAF
YLLSFFYYLYCMIYTLVSS"
BASE COUNT 376 a 566 c 593 g 458 t
ORIGIN
1 ggcattcctc gcggcgcccg cggcacagca gaagcagcac agcagcaggt ggagccccat
61 tcagctgcga gccgctcttg gccggaaacc cgcgccgcag ccgcctggcc gggagctggc
121 cctccaggct ggagcccacg ccgccccggc ccgacccagt ttcccaggca ccgggttacc
181 gaagccggcg gccgggggac gcggttgggt ccggggccgg atgcatctca gtgcgcatag
241 ctgcgctggg agaccccagc ccggggcgca gggctaacgg gacctggccc acctcaagac
301 ttgtgctctg gggacagagc ggctttggga ttcggagtcc aggcacctgg ccggaggctg
361 ttgaagtctg ggtgtcgtgc tcaccccacc tctttgcttg ggcaccaaca gagagagctc
421 tttccagagg accggacctc ctcgcctggt ccagagtgga gtcctcgcac ccggtgcctg
481 ttagtttcga gaacctttct agttgacact ggtctgcagg tgttctctgc tggttaggtt
541 tcttcttcgg ctagggggac tgttgctacc agaggcattc tgtgcctgtg ggcgctccaa
601 gtcccgggtc tccagtcctg ccagaatcgt ccgggcttcg ctgaccctca actctgtctc
661 tgcttgtcgt gggtgcttct agtcgtttgg gtttttaccc ggagtgtgta gactagacat
721 ctttctgact gctaattggg aaggctggtc tccagggagc ggctttgtgt gtggtgggat
781 ccggggtcct cagccatggc cttcactttc gctgctttct gctacatgct gtccctggtg
841 ctctgcgctg cgctcatctt tttcgctatc tggcacataa tcgcctttga cgagctaaga
901 acggatttca agagtcccat agaccagtgc aacccggttc atgcgagaga acggctgagg
961 aacatcgaac gcatctgctt ccttctgaga aaggtcagag gggtcccccc aggtggacgg
1021 aggaagggtc gcagagaaag gggtcagcag ctggtgctgc ccgagtactc tatccacagc
1081 ctcttctgca tcatgttcct gtgcgctcag gagtggctca ccctgggact caatgttcct
1141 ctgcttttct atcacttctg gaggtatttc cactgtccag cagatagctc agagctagcc
1201 tacgacccac cagttgtcat gaatgcggac accttgagct actgccagaa ggaggcctgg
1261 tgtaagctgg ccttctacct cctctccttc ttctactacc tgtactgcat gatttacacc
1321 ttagtgagct cctaactcag accctgctga tggagaggcc gaagctggga accactgcgg
1381 ctgtggctag aggagcacca gatggggatg acggagagac ccagatggca gagaccgaat
1441 gaaaggaacg ggagtcatac agcagtcaga gccatgttac ccacgtgtgt ctgtttctgc
1501 cttcgcattt cacatcccac atgggttgca gggcccctct gagcatgggc gtgccagctt
1561 gtagctgatg aaacactcaa cctctggaga tgccattatt acttccttca tccacttcac
1621 tgagcagcag aactgtgcga gtttcacatg gagagctcgt ctggatggta gaaatgaggc
1681 cagatgctgg caggtgtcga acaagggaca gaatggctca gggccaaggc cagatcttca
1741 gggatggctg agacccacag ggacaccatg ggctgcccaa gactcttgtc attttttttc
1801 cagagctgtg gtcacatgct ttgctcagtg caaggcagaa agctgtgggg actgccctga
1861 gccacctctc acgtcacttt tacgctctgt gtccaggagc ctgggctgtg gcttcctgag
1921 ctgggtgtgg cagcaagccc tgtccagtgt gaactgggga gggggagaaa atggatttct
1981 aaaaatgtct gcc
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