LOCUS AK013757 1328 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male hippocampus cDNA, RIKEN full-length
enriched library, clone:2900069G24 product:unclassifiable, full
insert sequence.
ACCESSION AK013757
VERSION AK013757.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1328)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=2900069G24
FEATURES Location/Qualifiers
source 1..1328
/clone="2900069G24"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:2900069G24"
/db_xref="MGI:1905879"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="hippocampus"
misc_feature 1..1328
/note="putative"
/note="unclassifiable"
BASE COUNT 361 a 308 c 322 g 334 t
ORIGIN
1 antgagtcaa actctcctaa tatagcttaa atatgctcac attatcctga tttactgtta
61 agactcctac tatgtaaata atttgtgtct gtgtctcacg gcttatctta tggacagagg
121 atggctgtct cctcccgtaa acaaaatgta gagaggatca acttcagcat ctgcatagag
181 tgggccagag tcggtccagc caggcttgtc ccctaagctg ctgttctatg taatttgcag
241 tcagttagaa taggctgcaa cctggcctct agacccttcc taaaggttct agcaccttcc
301 aacacaccat cgactagggc ctagtatcta acagatgggc cttgaaactc acccggatcc
361 tagctcaaat ggagtacaat gtgtgaagca ggcacaggct ggaaggcgtg cgtggtggca
421 ggcacggctc tcactgtggc tagagcatac ttccatctgt cgtagcctag aaatctaaag
481 acaagcatgt cccaaatcca ggcgctctcc ccactcccac accatgtttc cctgccccag
541 tggaggagtc tatgctgtag acagttcttt ctatagcctt ctctccctga aggagtgaat
601 caggactaga atggccaaag ggcaggaagc aacagggaga aagagaacgg aagcgtggat
661 catgtttaat tcataaacca aataatctct cgcccttggc aatgtgcagg atacttctca
721 ccctgcagta ggtggctctt tcaggaaaac aagtcgtgtt taattgcatt tatatttact
781 gggcacccat tagttagcca ctgtattgga gaccgcaggc atatcaaaaa gataaaagtc
841 aaatcttcag gaatcctatg gtataagatg ctacttgaac ataagatagc aggggccagc
901 agtgcagatt cacttttgtt attgatgagg agacaggcac tctactaccg agctgcatct
961 ccagtcccaa ggacatgttt gattggggac attacaaatg tcacattcat gtgtgcattt
1021 taacacacta aagtgaggag aaacatggct agcccagccc atcaggacct ttaggctcgt
1081 ctgtggagta tgagctttgg gaagtgtgaa gatgtgctga gtacctgact agcctcctgc
1141 ttggatctgg gtggggactt aggagcaggt gaacactgag aaagcagtct gctggtaggg
1201 accaggggtt ctttgtgtcc cacganccgt ggcgaggaaa cttcttgccc aaagacacag
1261 agagttgcaa acaatcttga gccttcagct tacctagagt gaaccacanc ggagctggga
1321 attgatgc
//