LOCUS AK013590 1066 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male hippocampus cDNA, RIKEN full-length
enriched library, clone:2900024J01 product:unclassifiable, full
insert sequence.
ACCESSION AK013590
VERSION AK013590.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1066)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=2900024J01
FEATURES Location/Qualifiers
source 1..1066
/clone="2900024J01"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:2900024J01"
/db_xref="MGI:1905744"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="hippocampus"
misc_feature 1..1066
/note="putative"
/note="unclassifiable"
BASE COUNT 215 a 315 c 310 g 226 t
ORIGIN
1 gcgggtccca ccgcgcgctg ctcgcgggca agccgctggg ctctggcgcc ttgagcatcc
61 gagcaggtcc tgcccccgcc gtagtggtgg gacctagagc tgccctccgc tccttgtccc
121 gggccagagg cggacactag gcggtagaag cagctgcagg gtctgacctg cccccgcccc
181 gcgcggagag ctgctgccag gaacagcaat attaataggt acaaacttcc tggaaagatt
241 ttcgtcttcg cggtaaatga cccctccttg tctgccgggg caggcgacgg ggaagcctgg
301 gacccacagg agccagggac atttgggacc catggagctg tggctcacga gagctgaggt
361 tcattggttg gggacccact cggtgggcag gtcacagaca ccgtagggca gggctgggct
421 cgccttggta aattaggcgt tggagccgcg acgcccgatt gccattcctc gggagcgcgc
481 acgccctggg ccaccccgcc cgtatgcagc ggccgtagct cctcctccgg atcgggcttc
541 ggggaccttt ggtcacttag gagcacccaa acaactctgc agctggtgcc cataggtgcg
601 cgtcattcct ttctctagaa ttacctggcc cagaagcagt tgtagccaaa gccacctctc
661 tctttcccag tcgccaagag aggacggatc aggaagcgtc ccaccggccg cttgggcgct
721 gtgtggtcag tccatgcctg catcttgcgg atagtcaggt cccagtgcct ccgcaggagg
781 ctcactcccc gtacggtggc tggagttccc aaaccctttt ttttttttta caactctgga
841 cagggcgcct gttctagatt ggttggaggt gttttcccac ctgaaagtca tcattcattg
901 aaaatattta ttgaagccga tgtggtggga agcttgtaat tccggcactc tggaggcaga
961 gggaagagga tctcccatag gtaaagttag ccaggtactg agcccttgac ttaaacaaac
1021 aaattatcgc tacaaagcaa acacaaaaat cctctttccc aaaact
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