LOCUS AK012271 1004 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700022J23 product:unclassifiable, full insert sequence. ACCESSION AK012271 VERSION AK012271.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1004) AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y., Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M., Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C., Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D., Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y., Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T., Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K., Yoshino,M., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=2700022J23 FEATURES Location/Qualifiers source 1..1004 /clone="2700022J23" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:2700022J23" /db_xref="MGI:1905410" /db_xref="taxon:10090" /dev_stage="11 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="whole body" misc_feature 1..1004 /note="putative" /note="unclassifiable" BASE COUNT 316 a 135 c 203 g 350 t ORIGIN 1 atgaattctg ctcagcacat gcagacgact cctgtgacag acagagaaca tgaagaagca 61 cggtctttcc atgcatgatg gtgggaatcc catccgagag tcaccggtcc agtggagtta 121 gttggcatta tatcttgggc tgcaaaatag acgtcatgag tgtgagagtc cgagtcgtaa 181 ggaacccgct ggggtacaga tgggaaacac ggacttaagt gtatgtttca tatactgaca 241 gtgggacatg gttctataga tcaattataa taataaatat tttaatttat cataatttat 301 aaaagctttg ttgtttatca gcagaggaaa tgaaggagcc ggaggaactg tactgtgccc 361 cgctggatcc cagcgggtgg acttggcatg ccttccatga ttcagggcaa aagtgttaag 421 tgttgagact tattttaaaa aagactgatg acacactatt ttcgtatttt tttgtttatt 481 tgcacaactt taaaccagat gactggttaa aattgaacag tacacaattt ataaagtgaa 541 aatcttttat aaggaaagca tatgacatgt gaatacacag ggaggtttgg ctttggttgt 601 tttgtttggt tttgtttttt ctttttaaga aaaaccctgc ctaaaataat cttgtaaaaa 661 gtatgtattt taaaattttt gttttaatat agaatattat aaagccaaaa tataattgtt 721 ttcagatttg gagtttaaaa tagagctata gaggtggttc tgattctttg acgtctcata 781 aaatgagact tttgtatatt aatgtataat aaaactgaaa taagattatt ttccttgaaa 841 tttttgtata gtttaaaaat gcttctgtgt tctttgttgg tattgggcca ctgcagatct 901 tagtgcagag tttatattta gctagactgt tatgttaatt aagaaatgca taaatctttt 961 attcttaata tttgtaattc taaataaatc aatctatgaa attt //