LOCUS AK004791 2591 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male lung cDNA, RIKEN full-length enriched
library, clone:1200015I03 product:HYPOTHETICAL 42.5 KDA PROTEIN
homolog [Mus musculus], full insert sequence.
ACCESSION AK004791
VERSION AK004791.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2591)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1200015I03
FEATURES Location/Qualifiers
source 1..2591
/clone="1200015I03"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1200015I03"
/db_xref="MGI:1896848"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="lung"
CDS 100..2037
/codon_start=1
/note="HYPOTHETICAL 42.5 KDA PROTEIN homolog [Mus
musculus] (SPTR|Q9JHR3, evidence: FASTY, 99.5%ID,
100%length, match=1107)"
/note="putative"
/protein_id="BAB23567.2"
/transl_table=1
/translation="MAAMLGDAIMVAKGLAKLTQAAVETHLQNLGLGGELLLAARALQ
STAVEQFSMVFGKVQGQDKHEDSYATENFEDLEAEVQFSTPQAAGTSLDFSAASSLDQ
SLSPSHSQGPAPAYASSGPFREAGLPGQATSPMGRVNGRLFVDHRDLFLANGIQRRSF
HQDQSSVGGLTAEDIEKARQAKARPESKPHKQMLSERARERKVPVTRIGRLANFGGLA
VGLGIGALAEVAKKSLRSENSTGKKAVLDSSPFLSEANAERIVSTLCKVRGAALKLGQ
MLSIQDDAFINPHLAKIFERVRQSADFMPLKQMTKTLNSDLGPHWRDKLEYFEERPFA
AASIGQVHLARMKGGREVAMKIQYPGVAQSINSDVNNLMAVLNMSNMLPEGLFPEHLI
DVLRRELTLECDYQREAAYAKKFRELLKDHPFFYVPEIVDELCSPHVLTTELISGFPL
DQAEGLSQEVRNEICYNILVLCLRELFEFHVMQTDPNWSNFFYDPQQHKVALLDFGAT
REYDRSFTDLYIQVIRAAADQDREAVLKKSIEMKFLTGYEVKAMEDAHLDAILILGEA
FASEEPFDFGTQSTTEKIHNLIPVMLKHRLIPPPEETYSLHRKMGGSFLICSKLKARF
PCKAMFEEAYSNYCRMKSGLQ"
regulatory 2566..2571
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2591
/note="putative"
BASE COUNT 586 a 697 c 757 g 551 t
ORIGIN
1 tagaagcgga gagtgtgcgg agcgctcgca gcggggcgag cgcgcggagg cgttgcgttg
61 cggacggagg agctaccttc ctgcagcccg ctctgaagga tggctgctat gttgggggat
121 gccatcatgg tggccaaagg ccttgccaag ctgacccaag cagcggtgga aacccacttg
181 cagaacctgg gccttggtgg ggagctcctc ctggcggcca gggccctgca gtctacagct
241 gtggagcagt tcagcatggt cttcgggaag gtgcagggtc aggataagca tgaagattca
301 tatgccactg agaactttga agatctggaa gccgaagttc agttctcaac accacaggca
361 gctggaacct ccctggactt ctctgcggcc tcttccctgg accagtcact gtctccatcc
421 cacagtcagg gaccggcccc tgcctatgct tccagtgggc ctttcaggga agctgggctc
481 cctggacagg ccacctctcc tatgggcaga gtcaatggaa ggctctttgt agatcacaga
541 gacttgttct tggccaacgg catccagcga agatccttcc accaggacca gtcctccgtg
601 ggaggcctca cggctgaaga cattgaaaag gcccggcagg ccaaggctcg ccctgagagc
661 aagccacaca agcagatgct cagtgagcgg gctcgggagc ggaaggtgcc agttacccgg
721 attgggcggt tggccaactt tggaggtctg gctgtaggtc tgggaattgg ggcgttggct
781 gaagttgcca agaagagtct gcgttctgag aactccacag gaaaaaaagc cgtgctggat
841 tctagcccct tcctgtcaga ggcaaatgca gagcgcattg tgagtacact gtgcaaggtg
901 cgtggggccg cactgaagct gggccagatg ctgagcatcc aggatgatgc cttcatcaac
961 cctcacctgg ccaagatctt tgagcgggtg aggcagagtg ctgacttcat gccactgaaa
1021 cagatgacga aaaccctcaa cagcgacctg ggcccccact ggagggacaa gctggagtac
1081 tttgaagagc ggccctttgc agcggcctcc atagggcagg tgcacctggc ccgcatgaag
1141 ggtggccgtg aggtggccat gaagatccag taccctggtg tggcccagag cattaacagt
1201 gacgtcaaca acctcatggc tgtgctgaac atgagtaaca tgcttccaga aggcctgttc
1261 cctgagcacc tgattgatgt gctgagacgg gagcttaccc ttgagtgtga ctaccagcgg
1321 gaggctgcct atgccaagaa gttcagggaa ctgctgaagg accatccctt cttctatgtg
1381 cctgagattg tggatgagtt gtgcagtccc catgtgctga ccacagagct catatcaggc
1441 ttccccttgg accaggcaga agggctgagc caggaagtga ggaatgagat ctgctacaac
1501 attttggtgc tgtgcctgag agagctgttt gagttccatg tcatgcagac tgaccccaac
1561 tggtccaatt tcttttatga ccctcagcag cacaaggtgg ctctcctgga cttcggcgca
1621 actagagaat atgacagatc ctttactgac ctctacattc aggtcatccg ggccgctgct
1681 gaccaggaca gggaggcagt gctaaagaaa tccatagaga tgaagttcct taccggttat
1741 gaggtcaagg ccatggagga tgctcacctg gatgctattc tcatcctggg ggaggccttt
1801 gcctccgaag agcccttcga cttcggtacc cagagcacta ctgagaagat ccacaacctg
1861 attcccgtca tgctgaagca ccgcctcatc ccacccccag aggagaccta ctctctgcac
1921 cgcaagatgg gtggctcttt cctcatctgc tctaagctga aggcccgctt cccctgtaag
1981 gccatgttcg aggaagcgta cagtaactac tgcaggatga agtctgggct gcagtaggtg
2041 aggtgtggtc caggctaact aggggccatg ccctccttca ggctcagtca agcagaggga
2101 ggacgttgaa agggagccac ggcctctatg aataggaaga gagcgttgcg tagaccctcc
2161 tattgcttct gtactgtcca gacaaaaagg caggcttctt ttgccatctc ctccctgctg
2221 tggatgtaca accaggaaca ggagcaatgc agtactaaac tcaacacagc cacctttggg
2281 gtctagttgg ccatgggaat gaattgtgtg tttctgggtg agcttatgtc cctgcccttt
2341 gccaccccag cctgtggcct ggagctagaa gctcaggaca gcagggtagc caccctagct
2401 cagtctcagc atggacaaca gaccctttta aaagcagggc tgacattgga tgagcagcag
2461 ggctccagca tgccccagga gagggagcta tcaccccacc ccaggggagc gacacaggct
2521 ctttgtttgt atgtcttgta attacacatt catacctttg cgttcaataa agaagtgcgt
2581 tggggactgc c
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