LOCUS AK004676 3092 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male lung cDNA, RIKEN full-length enriched
library, clone:1200009I24 product:NUCLEAR VCP-LIKE PROTEIN NVLP.2
(NUCLEAR VCP-LIKE PROTEIN NVLP.1) homolog [Homo sapiens], full
insert sequence.
ACCESSION AK004676
VERSION AK004676.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3092)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1200009I24
FEATURES Location/Qualifiers
source 1..3092
/clone="1200009I24"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1200009I24"
/db_xref="MGI:1896834"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="lung"
CDS 83..2650
/codon_start=1
/note="NUCLEAR VCP-LIKE PROTEIN NVLP.2 (NUCLEAR VCP-LIKE
PROTEIN NVLP.1) homolog [Homo sapiens] (SPTR|O15381,
evidence: FASTY, 87.9%ID, 100%length, match=2565)"
/note="putative"
/protein_id="BAB23464.1"
/transl_table=1
/translation="MKPRPGVFVDRKLKQRVIQYLSSNRCGKYVDTGILASDLQRLYS
VDYGRRKRNAFRIQVEKVFSIISSEKELKNLKELEDGHLAKRARQDEEDEYTESYSDD
DSNMEDYPDPQSANPMNSSLLSLYRRGNSESVSTTPKWGQREATTSTPLLTSKTGSVP
LKTPARESEGGWFIDKTPGGKKESLPLDLSDDQSNSKKQDSEIQILKDSSLLESDKKR
KGRAKGKGNKRKTENLQEVDGEIEALLQKKAKARSTELQISNVKFEDVGGNDATLKEV
CKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIV
SGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMD
DLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGIPDEAARERILQTLCRKL
RLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMKQQAQQKKKPEIEGLPSE
GDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVALAEVQPSA
KREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFRTLGLGTPAGILLAGPPG
CGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEV
DALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLD
KTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYTGADLTALVRE
ASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPSISIKDQVMYEALQRSLSQ"
regulatory 3071..3076
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3092
/note="putative"
BASE COUNT 912 a 644 c 782 g 754 t
ORIGIN
1 cgggggtttc cggtacggcg gcgagcgcgg ctgtggcagt ctttcccggt aacaagaggc
61 gcccgtgcgg ggcagcagca tcatgaagcc tagacccggg gttttcgtag acaggaaact
121 gaagcagcgg gtcattcagt acctcagtag taacagatgt ggcaaatatg tggacactgg
181 aatcttagca tccgacttgc aaagactgta cagtgtagat tatggtcgaa gaaaaagaaa
241 tgctttcagg attcaggtag aaaaagtatt tagcataatt agtagtgaga aagaacttaa
301 gaatcttaaa gaactagaag atggacatct ggcaaaaaga gcaagacaag atgaagagga
361 tgagtacact gaaagctatt ctgatgatga ttcgaacatg gaagattacc cagatccaca
421 gtcagcaaat cccatgaaca gctccctgct ctctttgtat cggagaggaa actcagagtc
481 tgtttcaacc actccgaagt ggggacagag agaagccacc acttccacgc cattgctgac
541 gtctaaaacg ggctccgtgc cattgaagac ccctgcccga gaatctgagg gaggatggtt
601 tattgacaaa actcccggtg gaaagaaaga aagtcttccc ttggacctat cagatgacca
661 aagcaactct aaaaagcagg attctgagat tcagatttta aaagactctt ctcttttgga
721 aagtgataag aaaaggaaag gtagggcaaa gggcaaagga aacaaaagaa aaacagagaa
781 tcttcaagaa gtagatggag aaatagaagc tcttctgcaa aagaaagcca aagcaaggag
841 tacagagttg cagatttcca atgtgaagtt tgaagatgtt ggaggcaatg atgcaacatt
901 aaaagaagtc tgcaaaatgc tcatacacat gcgccatcca gaggtatacc agcaccttgg
961 tgtcgtgccc cctcgtggag ttctcctgca tggaccacca ggctgtggga agacattact
1021 tgcacacgca atagcagggg aacttgactt gccgattctg aaagtggctg ctccagagat
1081 tgtgtccgga gtttctggag agtctgagca gaagctccgt gagttatttg accaggctgt
1141 gtcaaatgca ccatgtattg ttttcattga tgaaattgat gcaattaccc ccaaaagaga
1201 agttgcttca aaagatatgg aacgaagaat tgtagcccag cttctaacct gcatggatga
1261 tctgaataac gtggcagcta cagctcgggt cctagttatt ggagctacta acaggccaga
1321 ctcattggat cctgctttga gacgtgcagg aaggtttgac cgagaagtct gcttgggtat
1381 cccagatgag gcagccagag aaagaattct ccaaacgttg tgccgaaaac tgaggcttcc
1441 ggaaactttt aatttttgtc acttagcaca cctaacacca ggctttgttg gtgctgatct
1501 gatggctctt tgccgagagg cggccatgtg tgcggtcaat agggtcttga tgaaacaaca
1561 ggcgcagcag aagaaaaagc ctgagattga aggtttgccc tctgaaggag accaggagga
1621 aaggctggga gctgagccca cttctgaaac acaggatgaa ttgcaaaggc tgttggggtt
1681 gctaagagac caagatcccc tctcagagga acagatgcaa ggactgtgca ttgaattgaa
1741 cgatttcatt gttgctctag cagaagtcca gccttctgcc aaaagggaag gctttgtaac
1801 tgtccctaat gtgacatggg ctgatattgg tgccctggaa gatattagag atgagcttat
1861 aatggcaata ttggcacctg ttcgcaaccc agaccagttc agaactcttg gtttggggac
1921 tccagctggc atcctcctag ctggtcctcc tgggtgtgga aaaactctgc tagcaaaggc
1981 tgtggcaaat gagtctggac taaattttat atctgtcaaa ggccctgaat tattgaatat
2041 gtatgttggt gagagtgaac gtgctgttcg acaagttttt cagcgagcca agaactcagc
2101 cccctgcgtg atattttttg atgaagtgga tgctttatgt cctcggagat cagaccgaga
2161 aacaggtgct agtgttcgtg tggtgaatca gctgcttaca gagatggatg gcttagaaac
2221 acgccagcaa gtttttattt tggctgccac caatagacca gatatcattg accctgccat
2281 tctgcgccca ggccgcctgg acaaaacgct ctttgtgggt ttgcctcccc cagcagaccg
2341 tgttgccata ttaaagacta ttacaaaaaa tggcaccaaa cctccactgg atgaagatgt
2401 aaatttggaa acaattgcta atgaccttcg ttgtaattgc tatacgggtg cggacctcac
2461 tgctctggta cgggaagctt ctctctgtgc cctgagacaa gaaataacag ctcagaagaa
2521 tggtgttgga gcaggtgagc ttaaggtcag tcataagcac tttgaagacg ctttcaagaa
2581 agtaaaacca tccatatcaa taaaggatca agtgatgtat gaagctctgc agaggtccct
2641 cagtcagtga tgtttgcgct acctggcatg gaggaggtgt ctagtgtgtg gaactcacca
2701 cgaatcacag ttactctgga gggtctactt tcagcttgac accaatgatc cttttttttt
2761 ttttttaaat cagaaccagt tatctcttta ttttttggaa agtaagttgg ctgtgttagt
2821 aaaaccacat ctgctagtgt gggctgataa accatgtgct aggccccaag aaccctgagc
2881 cactgtcctg accctgctga ctgacaggca agggacagcc acccaagccc aataagagga
2941 gtaaaaaaag tagcaaaatt gcattcacca ctgtctccca ggctttgaaa ggtagcagtc
3001 taggctataa aagtctagaa gctctgcata gggagtgtta agcctgcagc aaaacaactt
3061 gtaaaaactc aataaattat agatagactt gt
//