LOCUS AK004177 1525 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
enriched library, clone:1110039P11 product:HYPOTHETICAL HEART
PROTEIN (FRAGMENT) homolog [Mus musculus], full insert sequence.
ACCESSION AK004177
VERSION AK004177.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1525)
AUTHORS Adachi,J., Aizawa,K., Akahira,S., Akimura,T., Arai,A., Aono,H.,
Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Fukunishi,Y.,
Furuno,M., Hanagaki,T., Hara,A., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Izawa,M.,
Kasukawa,T., Kato,H., Kawai,J., Kojima,Y., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Nishi,K.,
Nomura,K., Numazaki,R., Ohno,M., Okazaki,Y., Okido,T., Owa,C.,
Saito,H., Saito,R., Sakai,C., Sakai,K., Sano,H., Sasaki,D.,
Shibata,K., Shibata,Y., Shinagawa,A., Shiraki,T., Sogabe,Y.,
Suzuki,H., Tagami,M., Tagawa,A., Takahashi,F., Tanaka,T.,
Tejima,Y., Toya,T., Yamamura,T., Yasunishi,A., Yoshida,K.,
Yoshino,M., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (10-JUL-2000) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1110039P11
FEATURES Location/Qualifiers
source 1..1525
/clone="1110039P11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1110039P11"
/db_xref="MGI:1892615"
/db_xref="taxon:10090"
/dev_stage="18-day embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="whole body"
misc_feature 1..1525
/note="HYPOTHETICAL HEART PROTEIN (FRAGMENT) homolog [Mus
musculus] (SWISSPROT|Q60936, evidence: FASTY, 100%ID,
75.5%length, match=675)"
/note="putative"
BASE COUNT 356 a 401 c 421 g 347 t
ORIGIN
1 actggaggga caagctggag tactttgaag agcggccctt tgcagcggcc tccatagggc
61 aggtgcacct ggcccgcatg aagggtggcc gtgaggtggc catgaagatc cagtaccctg
121 gtgtggccca gagcattaac agtgacgtca acaacctcat ggctgtgctg aacatgagta
181 acatgcttcc agaaggcctg ttccctgagc acctgattga tgtgctgaga cgggagctta
241 cccttgagtg tgactaccag cgggaggctg cctatgccaa gaagttcagg gaactgctga
301 aggaccatcc cttcttctat gtgcctgaga ttgtggatga gttgtgcagt ccccatgtgc
361 tgaccacaga gctcatatca ggcttcccct tggaccaggc agaagggctg agccaggaag
421 tgaggaatga gatctgctac aacattttgg tgctgtgcct gagagagctg tttgagttcc
481 atgtcatgca gactgacccc aactggtcca atttctttta tgaccctcag cagcacaagg
541 tggctctcct ggatttcggc gcaactagag aatatgacag atcctttact gacctctaca
601 ttcaggtcat ccgggccgct gctgaccagg acagggaggc agtgctaaag aaatccatag
661 agatgaagtt ccttaccggt tatgaggtca aggccatgga ggatgctcac ctggatgcta
721 ttctcatcct gggggaggcc tttgcctccg aagagccctt cgacttcggt acccagagca
781 ctactgagaa gatcacaacc tgattccgtc atgctgaagc accgcctcat cccaccccca
841 gaggagacct actctctgca ccgcaagatg ggtggctctt tcctcatctg ctctaagctg
901 aaggcccgct tcccctgtaa ggccatgttc gaggaagcgt acagtaacta ctgcaggatg
961 aagtctgggc tgcagtaggt gaggtgtggt ccaggctaac taggggccat gccctccttc
1021 aggctcagtc aagcagaggg aggacgttga aagggagcca cggcctctat gaataggaag
1081 agagcgttgc gtagaccctc ctattgcttc tgtactgtcc agacaaaaag gcaggcttct
1141 tttgccatct cctccctgct gtggatgtac aaccaggaac aggagcaatg cagtactaaa
1201 ctcaacacag ccacctttgg ggtctagttg gccatgggaa tgaattgtgt gtttctgggt
1261 gagcttatgt ccctgccctt tgccacccca gcctgtggcc tggagctaga agctcaggac
1321 agcagggtag ccaccctagc tcagtctcag catggacaac agaccctttt aaaagcaggg
1381 ctgacattgg atgagcagca gggctccagc atgccccagg agagggagct atcaccccca
1441 ccccagggga gcgacacagg ctctttgttt gtatgtcttg taattacaca ttcatacctt
1501 tgcgttcaat aaagaagtgc gttgg
//