LOCUS AJ890452 694 bp mRNA linear HUM 07-OCT-2008 DEFINITION Homo sapiens partial mRNA for collagen, type XXVIII (COL28 gene), isoform 2. ACCESSION AJ890452 VERSION AJ890452.1 KEYWORDS alternative splicing; COL28 gene; collagen, type XXVIII. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 694) AUTHORS Kobbe B. JOURNAL Submitted (16-MAR-2005) to the INSDC. Kobbe B., Center for Biochemistry, University of Cologne, Joseph-Stelzmann-Str. 52, Cologne, D-50931, GERMANY. REFERENCE 2 AUTHORS Veit G., Kobbe B., Keene D.R., Paulsson M., Koch M., Wagener R. TITLE Collagen XXVIII, a novel von Willebrand factor A domain-containing protein with many imperfections in the collagenous domain JOURNAL J Biol Chem 281(6), 3494-3504(2006). PUBMED 16330543 FEATURES Location/Qualifiers source 1..694 /db_xref="H-InvDB:HIT000330191" /organism="Homo sapiens" /mol_type="mRNA" /clone_lib="NCI_CGAP_GC6" /clone="IMAGE:2308497" /tissue_type="pooled germ cell tumors" /db_xref="taxon:9606" CDS <1..393 /codon_start=1 /gene="COL28" /product="collagen, type XXVIII" /function="extracellular matrix protein" /note="isoform 2" /db_xref="GOA:Q2UY09" /db_xref="H-InvDB:HIT000330191.8" /db_xref="HGNC:HGNC:22442" /db_xref="InterPro:IPR002035" /db_xref="InterPro:IPR002223" /db_xref="InterPro:IPR008160" /db_xref="InterPro:IPR020901" /db_xref="InterPro:IPR036465" /db_xref="InterPro:IPR036880" /db_xref="UniProtKB/Swiss-Prot:Q2UY09" /protein_id="CAI67596.1" /translation="GMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRG PVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKTLNTSHGLEDPSCPDCSFC HFSLAADIQPKWPALLQLIPASGTRQDG" mat_peptide <1..390 /gene="COL28" /product="collagen, type XXVIII" regulatory 654..659 /regulatory_class="polyA_signal_sequence" BASE COUNT 182 a 178 c 158 g 176 t ORIGIN 1 ggaatgcctg gaacatcaat tcctggacca cctgggccaa agggagatag aggaggacct 61 gggatacctg gatttaaggg agaacctgga ctttctattc gaggaccaaa gggtgtccaa 121 ggccctcggg gaccagtggg tgctccagga ctcaaaggtg atggctatcc tggtgtgcct 181 ggacctcgtg gattaccagg accccctggg ccgatgggtt tacgtggagt gggagacact 241 ggagcaaaga ctttgaacac ttcccatggc cttgaagatc cttcatgccc cgactgcagc 301 ttctgtcatt tctccctggc tgccgacatt cagccaaaat ggcctgccct acttcagctc 361 attcctgcat cagggactcg ccaggatggc tgattattaa aagcttagct caaatgtcac 421 ctccccgacc acccatacag aaagcattac taccccaacc cctctgtatg ttttccatgt 481 agcgtgtatc actttctgag atcatcttcc tcatttattt ctctgcatat tccatgagag 541 tgaaggtttt cctggagcag gcttcttgct ttgttccctc ctaacttcat gtcaccagaa 601 ctaggtgtac cattcagtag gagctctaca acctgttgaa tgaatggaaa atgaataaat 661 gatcaatatt accctaaaaa aaaaaaaaaa aaaa //