LOCUS AJ890451 3515 bp mRNA linear HUM 07-OCT-2008
DEFINITION Homo sapiens mRNA for collagen, type XXVIII (COL28 gene), isoform
1.
ACCESSION AJ890451
VERSION AJ890451.1
KEYWORDS alternative splicing; COL28 gene; collagen, type XXVIII.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3515)
AUTHORS Kobbe B.
JOURNAL Submitted (16-MAR-2005) to the INSDC. Kobbe B., Center for
Biochemistry, University of Cologne, Joseph-Stelzmann-Str. 52,
Cologne, D-50931, GERMANY.
REFERENCE 2
AUTHORS Veit G., Kobbe B., Keene D.R., Paulsson M., Koch M., Wagener R.
TITLE Collagen XXVIII, a novel von Willebrand factor A domain-containing
protein with many imperfections in the collagenous domain
JOURNAL J Biol Chem 281(6), 3494-3504(2006).
PUBMED 16330543
FEATURES Location/Qualifiers
source 1..3515
/db_xref="H-InvDB:HIT000330190"
/organism="Homo sapiens"
/mol_type="mRNA"
/dev_stage="adult"
/tissue_type="lung"
/db_xref="taxon:9606"
CDS 118..3495
/gene="COL28"
/product="collagen, type XXVIII"
/function="extracellular matrix protein"
/note="isoform 1"
/db_xref="GOA:Q2UY09"
/db_xref="H-InvDB:HIT000330190.11"
/db_xref="HGNC:HGNC:22442"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR002223"
/db_xref="InterPro:IPR008160"
/db_xref="InterPro:IPR020901"
/db_xref="InterPro:IPR036465"
/db_xref="InterPro:IPR036880"
/db_xref="UniProtKB/Swiss-Prot:Q2UY09"
/protein_id="CAI67595.1"
/translation="MWNRYFVFYLLLLSAFTSQTVSGQRKKGPKSNLLARKSDVQGSI
CFIDIVFIVDSSESSKIALFDKQKDFVDSLSDKIFQLTPGRSLEYDIKLAALQFSSSV
QIDPPFSSWKDLQTFKQKVKSMNLIGQGTFSYYAISNATRLLKREGRKDGVKVVLLMT
DGIDHPKNPDVQSISEDARISGISFITIGLSTVVNEAKLRLISGDSSSEPTLLLSDPT
LVDKIQDRLDILFEKKCERKICECEKGDPGDPGPPGTHGNPGIKGERGPKGNPGNAQK
GEAGERGPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPG
PKGFQGNKGEPGPPGPYGSPGAPGIGQQGIKGERGQEGRPGAPGPIGVGEPGQPGPRG
PEGVPGERGLPGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPVGPQGPMGIPG
IGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGS
IGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRG
LPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQG
PRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRG
VGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGE
RGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLE
LVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFS
SKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEK
LTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTL
KQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQD
EDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEALKPGNCGEYVVRW
YYDKQVNSCARFWFSGCNGSGNRFNSEKECQETCIQG"
sig_peptide 118..186
/gene="COL28"
mat_peptide 187..3492
/gene="COL28"
/product="collagen, type XXVIII"
BASE COUNT 1029 a 742 c 989 g 755 t
ORIGIN
1 taacttcacc cccaaccaca gtccttgctg ttggcattta ctcaactagt ctttaattcc
61 tgtttgacaa actttataag gtgctacaag acagatgatt tttcaccatc taccataatg
121 tggaacagat attttgtctt ctatctcctg cttttgtcag cgtttacgag tcaaacagta
181 tccggacaaa gaaagaaagg accaaaatca aatttgcttg caaggaaaag tgatgtccag
241 ggctccattt gtttcataga tattgtcttc atcgtggaca gctctgaaag ttctaaaatt
301 gccctctttg ataaacagaa agattttgtg gatagcttga gtgacaagat tttccaattg
361 actcctggtc gctccttgga atatgacatc aaactggcag cccttcagtt tagcagctct
421 gtccaaattg atccaccttt ttcttcctgg aaggacctgc agacatttaa gcagaaggtc
481 aagtctatga atttaatagg gcaaggtacc ttctcttatt atgccatttc caatgccact
541 aggctactta agagagaagg gcgtaaggat ggtgtgaaag tggttttgct gatgactgat
601 ggcatcgacc atccaaagaa tccagatgtt caaagtattt ctgaagatgc cagaatttca
661 ggaatatcat ttatcaccat tggactttct acggtagtca atgaagccaa acttcgtttg
721 atttctgggg attcatccag tgaacccact ttactgttga gtgatccaac ccttgtagat
781 aaaattcaag atcgtctgga tatcttattt gaaaagaagt gtgaacgcaa gatttgtgaa
841 tgtgagaagg gagatccagg tgatccaggg cctcctggta cacatggaaa tccaggtatc
901 aaaggtgagc gaggaccaaa aggaaacccg ggcaacgctc aaaaaggaga agctggagaa
961 agaggtccag ggggaattcc tgggtacaag ggtgacaagg gtgaacgtgg ggaatgtggt
1021 aaaccaggga taaaaggtga caagggatcc ccagggccat atggaccaaa gggacccaga
1081 ggaattcagg gaattactgg acctccagga gacccaggcc caaaggggtt tcaaggcaat
1141 aagggtgagc caggtcctcc tggtccttat ggttctccag gagctcctgg aattggacag
1201 caaggtatta agggagaaag aggccaagaa ggaagaccgg gagctccagg acccattgga
1261 gttggtgagc ctggacagcc aggtccccgt ggtcctgagg gagtaccagg agagaggggc
1321 ttacccggag aaggatttcc aggaccaaag ggtgaaaaag gttctgaagg accaactggc
1381 ccacagggat tacaaggcct gtcaatcaaa ggggagaagg gggatatagg acctgtggga
1441 ccccaaggac caatgggtat ccctggaatc gggagtcaag gggaacaggg aatccaaggt
1501 cctattggtc cacctggtcc acaagggccc gcaggacagg gcttacctgg ttccaaggga
1561 gaagtaggcc aaatgggacc tacaggccct cgaggaccag tgggaattgg agtacaaggt
1621 ccaaagggag agccaggctc aatagggctc ccaggacaac caggagtacc aggagaagat
1681 ggagctgcag ggaagaaggg agaagcgggg cttccgggag caagaggccc agaaggacca
1741 cctggaaaag gacagcctgg ccccaagggt gacgaaggca agaaagggag caaaggaaat
1801 caaggacaga ggggacttcc agggcccgaa ggaccaaagg gtgaaccggg cattatgggc
1861 ccttttggaa tgcctggaac atcaattcct ggaccacctg ggccaaaggg agatagagga
1921 ggacctggga tacctggatt taagggagaa cctggacttt ctattcgagg accaaagggt
1981 gtccaaggcc ctcggggacc agtgggtgct ccaggactca aaggtgatgg ctatcctggt
2041 gtgcctggac ctcgtggatt accaggaccc cctgggccga tgggtttacg tggagtggga
2101 gacactggag caaagggaga gcctggggtc agaggccctc caggtccttc tgggcctcgg
2161 ggcgtaggaa cccaagggcc aaagggtgat actgggcaga aaggcttgcc tggccctcct
2221 ggcccccctg gctatggatc acagggaatt aaaggggaac aaggaccaca aggcttccca
2281 ggcccaaagg gcacaatggg ccatggcctc ccaggccaga agggagagca cggagaacgg
2341 ggcgatgtgg gaaagaaagg tgataaagga gaaattggag agcctggatc tccaggaaaa
2401 cagggtttac aaggacccaa aggagaccta ggacttacaa aagaagaaat tatcaaactt
2461 attacagaaa tatgtggttg tgggcccaaa tgcaaagaga ctccactaga gctggtgttt
2521 gtgatcgaca gctcagaaag cgtggggcca gagaactttc agatcattaa aaattttgtg
2581 aagactatgg ctgaccgggt tgctctggac cttgccacgg cccgcatagg cataatcaac
2641 tatagccata aggtggagaa ggtggctaat ttgaagcagt tctccagcaa ggatgacttc
2701 aagttggctg tggacaacat gcagtatctg ggggaaggca catacacagc cactgctctg
2761 caagcagcca acgacatgtt tgaagatgca aggccaggtg taaaaaaagt ggccttggtc
2821 atcactgatg gacagacaga ttctcgtgat aaagagaaac tgacagaggt ggtgaagaat
2881 gccagtgaca ccaatgtgga gatatttgtg ataggggtgg tgaagaaaaa tgatcccaac
2941 tttgaaatat tccacaaaga aatgaatcta attgctactg acccagagca tgtttaccag
3001 tttgatgatt tctttaccct gcaagacacc ctgaagcaaa aattgtttca aaaaatttgt
3061 gaggattttg attcctatct cgttcaaatt tttggttcat cgtcacctca acctggattt
3121 gggatgtcag gggaagaact cagtgaatct actccagagc ctcaaaaaga aatttctgag
3181 tcattgagtg tcaccagaga ccaggatgaa gatgataagg ctccagagcc aacgtgggct
3241 gatgatctgc ctgccactac ctcatctgag gccaccacca cccccaggcc actgctcagc
3301 acccctgtgg atggggcaga ggatcctaga tgtttggaag ccttgaagcc tggaaactgt
3361 ggtgaatatg tggttcgatg gtattatgac aaacaggtca actcttgtgc ccgattttgg
3421 ttcagtggct gtaatggctc aggaaataga ttcaacagtg aaaaggaatg tcaagaaacc
3481 tgcattcaag gatgagcaag taaattggcc tgtct
//