LOCUS AJ584709 1754 bp mRNA linear HUM 15-APR-2005 DEFINITION Homo sapiens partial mRNA for neuronal nicotinic acetylcholine receptor, alpha3 subunit, splice variant 2, (CHRNA3 gene). ACCESSION AJ584709 VERSION AJ584709.1 KEYWORDS alpha3 subunit; alternative splicing; CHRNA3 gene; neuronal nicotinic acetylcholine receptor. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1754) AUTHORS Solda G. JOURNAL Submitted (26-SEP-2003) to the INSDC. Solda G., Biology and Genetics for Medical Science, University of Milan, v. Viotti 3/5, 20133 Milan, ITALY. REFERENCE 2 AUTHORS Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M., Tenchini M.L. TITLE In vivo RNA-RNA duplexes from CHRNA3 and CHRNA5 overlapping transcripts. JOURNAL Unpublished. REFERENCE 3 AUTHORS Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M., Tenchini M.L. TITLE In vivo RNA-RNA duplexes from human alpha3 and alpha5 nicotinic receptor subunit mRNAs JOURNAL Gene 345(2), 155-164(2005). PUBMED 15716100 FEATURES Location/Qualifiers source 1..1754 /db_xref="H-InvDB:HIT000249164" /organism="Homo sapiens" /chromosome="15" /map="15q24" /mol_type="mRNA" /cell_line="SY5Y human neuroblastoma" /db_xref="taxon:9606" mRNA <1..1732 /gene="CHRNA5" /note="alternative" /note="splice variant 1, long 3'UTR" CDS <1..129 /codon_start=1 /gene="CHRNA3" /product="neuronal nicotinic acetylcholine receptor, alpha3 subunit" /note="alternative" /note="splice variant 1, long 3'UTR" /db_xref="GOA:Q6EWN2" /db_xref="H-InvDB:HIT000249164.13" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR036719" /db_xref="UniProtKB/TrEMBL:Q6EWN2" /experiment="experimental evidence, no additional details recorded" /protein_id="CAE48371.1" /translation="IQDDWKYVAMVIDRIFLWVFTLVCILGTAGLFLQPLMAREDA" 3'UTR 130..1732 /gene="CHRNA3" /note="splice variant 1, long 3'UTR" repeat_region complement(701..1046) /rpt_family="LTR/MaLR" repeat_region complement(1060..1284) /rpt_family="MER20" regulatory 1705..1710 /gene="CHRNA3" /regulatory_class="polyA_signal_sequence" polyA_site 1732 /gene="CHRNA3" BASE COUNT 528 a 338 c 354 g 534 t ORIGIN 1 attcaagatg attggaagta tgttgccatg gtgattgatc gtatttttct gtgggttttc 61 accctggtgt gcattctagg gacagcagga ttgtttctgc aacccctgat ggccagggaa 121 gatgcataag cactaagctg tgtgcctgcc tgggagactt ccttgtgtca gggcaggagg 181 aggctgcttc ctagtaagaa cgtactttct gttatcaagc taccagcttt gtttttggca 241 tttcgaggtt tacttatttt ccacttatct tggaatcatg caaaaaaaaa atgtcaagag 301 tatttattac cgataaatga acatttaact agcctttttg gtatggtaaa gagatgtcaa 361 aatgtgattc tatgtgatta gtatgctatg ctatggaata tacatgtaaa aatgtttcct 421 tttagttgtt gaaacaaaac tggatagaaa aatgctgttc agaaatatga aaagtcattc 481 agttatcact acagatctcc cagtaatttt tcttatttag cccataatct ctttgaaggt 541 ttatactaat tcagcaatcc cccatcgtta cccatttctt accatgcatt tctcgttctt 601 tactgggtct aaagggctat gcctccattt cagagagctt caactacttc tcttgcatac 661 ttctaaatta tactatgaga aatcatgcct agttattcat tgttaatata actgtcttag 721 tacaccataa actgggtgga ttataaacaa cagaaacttc tcagttttgg aggttgggag 781 gtccaaggtc aaggcaccag caaatttggt gtctggtgag ggtcctcttc ctcaaagggg 841 gggtgccttc tagctgtgtc ctcacatgac tgaagggact agctatctct gtggggtcta 901 ttttataagg gcactaaccc cattcatgag agcagagccc ccatggccta atcacctttc 961 caaggcccca ccttctatct aagacaatca cgctgggaat aggtttcaac atatgaattg 1021 ggggaggaca catttggacc acagcatgaa cctttagaac agggtttctc agccttagca 1081 ctacggacat tttgggctgg ataaatatgt gttggtacag aatgggggta tcctgtgcat 1141 tgtaggatct ttagcagtac cctagcctca actcactaga tgccaatgac ataccttgct 1201 tcttcaccag ttatgataac caagaatgtc tccattgtta aatgtcccct taggagcaaa 1261 attgcccctg gttgagaaac attgctttag acaaattgtt aagagtatca tgtactacac 1321 ttctgaaact taacgtgatc atcaccactg acagatgatt cacagagaga gactgtttga 1381 atcttgtctc actagttttt cctgtgcaaa aataaaatgg acagaattgc agcccgctgt 1441 gactcatgtt tcaataagtc aaaagaaaga tgtcgataaa aatttatata taaaaatcat 1501 aagtaacagt aatggtagta taagagggat cagggatgta tacgaactaa ggtaggtagc 1561 tggcaggcaa tctaaattca tcacaccagg ctttcactca ttaaatggca ttaaacacct 1621 gcctacgatt aaatgcaaat tagatagggt ctcctccgcc ttccaaagag cattggcttg 1681 aacttagata ggttacttat tataaataaa tgaggtgttt gtgatctcaa caaaaaaaaa 1741 aaaaaaaaaa aaaa //