LOCUS       AJ584706                2214 bp    mRNA    linear   HUM 14-NOV-2006
DEFINITION  Homo sapiens partial mRNA for neuronal nicotinic acetylcholine
            receptor, alpha5 subunit, splice variant 2, (CHRNA5 gene).
ACCESSION   AJ584706
VERSION     AJ584706.1
KEYWORDS    alpha5 subunit; alternative splicing; CHRNA5 gene; neuronal
            nicotinic acetylcholine receptor.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Solda G.
  JOURNAL   Submitted (26-SEP-2003) to the INSDC. Solda G., Biology and
            Genetics for Medical Science, University of Milan, v. Viotti 3/5,
            20133 Milan, ITALY.
REFERENCE   2
  AUTHORS   Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M.,
            Tenchini M.L.
  TITLE     In vivo RNA-RNA duplexes from CHRNA3 and CHRNA5 overlapping
            transcripts.
  JOURNAL   Unpublished.
REFERENCE   3
  AUTHORS   Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M.,
            Tenchini M.L.
  TITLE     In vivo RNA-RNA duplexes from human alpha3 and alpha5 nicotinic
            receptor subunit mRNAs
  JOURNAL   Gene 345(2), 155-164(2005).
   PUBMED   15716100
FEATURES             Location/Qualifiers
     source          1..2214
                     /db_xref="H-InvDB:HIT000249161"
                     /organism="Homo sapiens"
                     /chromosome="15"
                     /map="15q24"
                     /mol_type="mRNA"
                     /cell_line="SY5Y human neuroblastoma"
                     /db_xref="taxon:9606"
     mRNA            <1..2191
                     /gene="CHRNA5"
                     /note="alternative"
                     /note="splice variant 1, long 3'UTR"
     CDS             <1..175
                     /codon_start=2
                     /gene="CHRNA5"
                     /product="neuronal nicotinic acetylcholine receptor,
                     alpha5 subunit"
                     /note="alternative"
                     /note="splice variant 1, long 3'UTR"
                     /db_xref="GOA:Q6EWN4"
                     /db_xref="H-InvDB:HIT000249161.13"
                     /db_xref="InterPro:IPR006029"
                     /db_xref="InterPro:IPR006201"
                     /db_xref="InterPro:IPR036719"
                     /db_xref="UniProtKB/TrEMBL:Q6EWN4"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /protein_id="CAE48368.1"
                     /translation="DVREVVEDWKFIAQVLDRMFLWTFLFVSIVGSLGLFVPVIYKWA
                     NILIPVHIGNANK"
     3'UTR           176..2191
                     /gene="CHRNA5"
                     /note="splice variant 1, long 3'UTR"
     variation       568
                     /allele="heterozygous allele"
                     /replace="t"
     repeat_region   681..964
                     /rpt_family="Alu-Sp"
                     /experiment="experimental evidence, no additional details
                     recorded"
     variation       778
                     /allele="heterozygous allele"
                     /replace="t"
     variation       807
                     /replace="a"
                     /note="g>a"
     repeat_region   1317..1602
                     /rpt_family="Alu-Sq"
     regulatory      2174..2179
                     /gene="CHRNA5"
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      2191
                     /gene="CHRNA5"
BASE COUNT          690 a          422 c          425 g          677 t
ORIGIN      
        1 tgatgtccgt gaggttgttg aagattggaa attcatagcc caggttcttg atcggatgtt
       61 tctgtggact tttcttttcg tttcaattgt tggatctctt gggctttttg ttcctgttat
      121 ttataaatgg gcaaatatat taataccagt tcatattgga aatgcaaata agtgaagcct
      181 cccaagggac tgaagtatac atttagttaa cacacatata tctgatggca cctataaaat
      241 tatgaaaatg taagttatgt gttaaattta gtgcaagctt taacagacta agttgctaac
      301 ctcaatttat gttaacagat gatccatttg aacagttggc tgtatgactg aagtaataac
      361 tgatgagata catttgatct tgtaaaaata gcaaaatatt atctgaactg gactagtgaa
      421 aaatctagta tttgtatcct ggcaaataat actaatttat aatccacagt aaagttcatc
      481 ctttgactgt gctggagaat tccagttgta tttgaagact gattttaaaa cttttctgca
      541 tttggtaaag gtatgtaaac tttcctgcac tcactgagta acagctaatc tttaatataa
      601 tattatactg ctatatttaa aaagctgact acttgatata attacttaat gtgatgcttg
      661 atataataat tacttaatgt ggccgggcac ggtggctcac acctgtaatc ccagcacttt
      721 gggaggtcga ggtgggcgta tcacctgagg ttgggagttc gagaccagcc tgaccaacgt
      781 ggagaaaccc cgtctctact aaaaatgtga aattagccag ggtggtggtg cacacctgta
      841 atcccagcta cctgggaggc tgcggcagga gaatcgcttg aacccaggtg gcggaggttg
      901 cggtgagctg agatcacgcc attgcactcc agcctgggca acaagagcaa aactcagtct
      961 caaataataa taataacaac aacttaatgt gctgctgctt ttccataacc aacattttaa
     1021 aaataaatga aaaacaggaa ttgggaactc ctttaaggct tactttattc tttagatgct
     1081 taattattgt gttaactatt tctgtagctt agcttccact gtaaagtcat acagtagaca
     1141 actcctgtgg acacgcagta gcatatcctt aacattaatt tcagtcctct tgtccacatt
     1201 tcccacaatt aatagaacca tcttctatat aaattgtggt agtatctctt tatccttgat
     1261 cttagaatag tcagtccact acaattacat gaaccccatt taaaaaacat atttagggcc
     1321 gggggcagtg gctcacatct gtaatccaag cactttggga ggctgaggca ggtggatcac
     1381 cagaggttag gagttcgaga ctagcctgac caacatggtg aagccccgtc tctactaaga
     1441 atacaaaaaa ttagtcgggc atggtagcag gcgcctgtag tcccagctac tcaagaggct
     1501 gaggcaggag aatcgcttga acctgggagg tggaggctgc agtgagccga gactgcgcca
     1561 ttgcactcca gcctggcaac aagagcaaaa ctctgtctca aacatatttt ggtctaaatc
     1621 attctgtgag aaaacaatct tctaatatga aacacagtat tctaatttgg tatatgcaca
     1681 ctgttatata cctgtaatat ttcagttttc tctccttcat tctaacaatt acaataatag
     1741 aatcttagag ttgcaagggc ctttagatgt aatcaatctt agcctattac tagtacagcg
     1801 taaatgattt agtacagtat aatgtatcac agttaaaaca gttaaattcc atctctaaat
     1861 gtcaccactt caggtgtgac caggtagcaa acactgacag aaaccctcgt tcaatttaga
     1921 actcttagct gttgagatca caaacacctc atttatttat aataagtaac ctatctaagt
     1981 tcaagccaat gctctttgga aggcggagga gaccctatct aatttgcatt taatcgtagg
     2041 caggtgttta atgccattta atgagtgaaa gcctggtgtg atgaatttag attgcctgcc
     2101 agctacctac cttagttcgt atacatccct gatccctctt atactaccat tactgttact
     2161 tatgattttt atatataaat ttttatcgac aaaaaaaaaa aaaaaaaaaa aaaa
//