LOCUS AJ584706 2214 bp mRNA linear HUM 14-NOV-2006 DEFINITION Homo sapiens partial mRNA for neuronal nicotinic acetylcholine receptor, alpha5 subunit, splice variant 2, (CHRNA5 gene). ACCESSION AJ584706 VERSION AJ584706.1 KEYWORDS alpha5 subunit; alternative splicing; CHRNA5 gene; neuronal nicotinic acetylcholine receptor. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2214) AUTHORS Solda G. JOURNAL Submitted (26-SEP-2003) to the INSDC. Solda G., Biology and Genetics for Medical Science, University of Milan, v. Viotti 3/5, 20133 Milan, ITALY. REFERENCE 2 AUTHORS Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M., Tenchini M.L. TITLE In vivo RNA-RNA duplexes from CHRNA3 and CHRNA5 overlapping transcripts. JOURNAL Unpublished. REFERENCE 3 AUTHORS Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M., Tenchini M.L. TITLE In vivo RNA-RNA duplexes from human alpha3 and alpha5 nicotinic receptor subunit mRNAs JOURNAL Gene 345(2), 155-164(2005). PUBMED 15716100 FEATURES Location/Qualifiers source 1..2214 /db_xref="H-InvDB:HIT000249161" /organism="Homo sapiens" /chromosome="15" /map="15q24" /mol_type="mRNA" /cell_line="SY5Y human neuroblastoma" /db_xref="taxon:9606" mRNA <1..2191 /gene="CHRNA5" /note="alternative" /note="splice variant 1, long 3'UTR" CDS <1..175 /codon_start=2 /gene="CHRNA5" /product="neuronal nicotinic acetylcholine receptor, alpha5 subunit" /note="alternative" /note="splice variant 1, long 3'UTR" /db_xref="GOA:Q6EWN4" /db_xref="H-InvDB:HIT000249161.13" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR036719" /db_xref="UniProtKB/TrEMBL:Q6EWN4" /experiment="experimental evidence, no additional details recorded" /protein_id="CAE48368.1" /translation="DVREVVEDWKFIAQVLDRMFLWTFLFVSIVGSLGLFVPVIYKWA NILIPVHIGNANK" 3'UTR 176..2191 /gene="CHRNA5" /note="splice variant 1, long 3'UTR" variation 568 /allele="heterozygous allele" /replace="t" repeat_region 681..964 /rpt_family="Alu-Sp" /experiment="experimental evidence, no additional details recorded" variation 778 /allele="heterozygous allele" /replace="t" variation 807 /replace="a" /note="g>a" repeat_region 1317..1602 /rpt_family="Alu-Sq" regulatory 2174..2179 /gene="CHRNA5" /regulatory_class="polyA_signal_sequence" polyA_site 2191 /gene="CHRNA5" BASE COUNT 690 a 422 c 425 g 677 t ORIGIN 1 tgatgtccgt gaggttgttg aagattggaa attcatagcc caggttcttg atcggatgtt 61 tctgtggact tttcttttcg tttcaattgt tggatctctt gggctttttg ttcctgttat 121 ttataaatgg gcaaatatat taataccagt tcatattgga aatgcaaata agtgaagcct 181 cccaagggac tgaagtatac atttagttaa cacacatata tctgatggca cctataaaat 241 tatgaaaatg taagttatgt gttaaattta gtgcaagctt taacagacta agttgctaac 301 ctcaatttat gttaacagat gatccatttg aacagttggc tgtatgactg aagtaataac 361 tgatgagata catttgatct tgtaaaaata gcaaaatatt atctgaactg gactagtgaa 421 aaatctagta tttgtatcct ggcaaataat actaatttat aatccacagt aaagttcatc 481 ctttgactgt gctggagaat tccagttgta tttgaagact gattttaaaa cttttctgca 541 tttggtaaag gtatgtaaac tttcctgcac tcactgagta acagctaatc tttaatataa 601 tattatactg ctatatttaa aaagctgact acttgatata attacttaat gtgatgcttg 661 atataataat tacttaatgt ggccgggcac ggtggctcac acctgtaatc ccagcacttt 721 gggaggtcga ggtgggcgta tcacctgagg ttgggagttc gagaccagcc tgaccaacgt 781 ggagaaaccc cgtctctact aaaaatgtga aattagccag ggtggtggtg cacacctgta 841 atcccagcta cctgggaggc tgcggcagga gaatcgcttg aacccaggtg gcggaggttg 901 cggtgagctg agatcacgcc attgcactcc agcctgggca acaagagcaa aactcagtct 961 caaataataa taataacaac aacttaatgt gctgctgctt ttccataacc aacattttaa 1021 aaataaatga aaaacaggaa ttgggaactc ctttaaggct tactttattc tttagatgct 1081 taattattgt gttaactatt tctgtagctt agcttccact gtaaagtcat acagtagaca 1141 actcctgtgg acacgcagta gcatatcctt aacattaatt tcagtcctct tgtccacatt 1201 tcccacaatt aatagaacca tcttctatat aaattgtggt agtatctctt tatccttgat 1261 cttagaatag tcagtccact acaattacat gaaccccatt taaaaaacat atttagggcc 1321 gggggcagtg gctcacatct gtaatccaag cactttggga ggctgaggca ggtggatcac 1381 cagaggttag gagttcgaga ctagcctgac caacatggtg aagccccgtc tctactaaga 1441 atacaaaaaa ttagtcgggc atggtagcag gcgcctgtag tcccagctac tcaagaggct 1501 gaggcaggag aatcgcttga acctgggagg tggaggctgc agtgagccga gactgcgcca 1561 ttgcactcca gcctggcaac aagagcaaaa ctctgtctca aacatatttt ggtctaaatc 1621 attctgtgag aaaacaatct tctaatatga aacacagtat tctaatttgg tatatgcaca 1681 ctgttatata cctgtaatat ttcagttttc tctccttcat tctaacaatt acaataatag 1741 aatcttagag ttgcaagggc ctttagatgt aatcaatctt agcctattac tagtacagcg 1801 taaatgattt agtacagtat aatgtatcac agttaaaaca gttaaattcc atctctaaat 1861 gtcaccactt caggtgtgac caggtagcaa acactgacag aaaccctcgt tcaatttaga 1921 actcttagct gttgagatca caaacacctc atttatttat aataagtaac ctatctaagt 1981 tcaagccaat gctctttgga aggcggagga gaccctatct aatttgcatt taatcgtagg 2041 caggtgttta atgccattta atgagtgaaa gcctggtgtg atgaatttag attgcctgcc 2101 agctacctac cttagttcgt atacatccct gatccctctt atactaccat tactgttact 2161 tatgattttt atatataaat ttttatcgac aaaaaaaaaa aaaaaaaaaa aaaa //