LOCUS AJ584705 1061 bp mRNA linear HUM 14-NOV-2006 DEFINITION Homo sapiens partial mRNA for neuronal nicotinic acetylcholine receptor alpha 5 subunit, splice variant 1, (CHRNA5 gene). ACCESSION AJ584705 VERSION AJ584705.1 KEYWORDS alpha5 subunit; alternative splicing; CHRNA5 gene; neuronal nicotinic acetylcholine receptor. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1061) AUTHORS Solda G. JOURNAL Submitted (26-SEP-2003) to the INSDC. Solda G., Biology and Genetics for Medical Science, University of Milan, v. Viotti 3/5, 20133 Milan, ITALY. REFERENCE 2 AUTHORS Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M., Tenchini M.L. TITLE In vivo RNA-RNA duplexes from human alpha3 and alpha5 nicotinic receptor subunit mRNAs JOURNAL Gene 345(2), 155-164(2005). PUBMED 15716100 FEATURES Location/Qualifiers source 1..1061 /db_xref="H-InvDB:HIT000249160" /organism="Homo sapiens" /chromosome="15" /map="15q24" /mol_type="mRNA" /cell_line="SY5Y human neuroblastoma" /db_xref="taxon:9606" mRNA <1..1046 /gene="CHRNA5" /note="alternative" /note="splice variant 1, short 3'UTR" CDS <1..175 /codon_start=2 /gene="CHRNA5" /product="neuronal nicotinic acetylcholine receptor, alpha5 subunit" /note="alternative" /note="splice variant 1, short 3'UTR" /db_xref="GOA:Q6EWN4" /db_xref="H-InvDB:HIT000249160.13" /db_xref="InterPro:IPR006029" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR036719" /db_xref="UniProtKB/TrEMBL:Q6EWN4" /experiment="experimental evidence, no additional details recorded" /protein_id="CAE48367.1" /translation="DVREVVEDWKFIAQVLDRMFLWTFLFVSIVGSLGLFVPVIYKWA NILIPVHIGNANK" 3'UTR 176..1046 /gene="CHRNA5" /note="splice variant 1, short 3'UTR" variation 568 /allele="heterozygous allele" /replace="t" repeat_region 681..964 /rpt_family="Alu-Sp" /experiment="experimental evidence, no additional details recorded" variation 778 /allele="heterozygous allele" /replace="t" variation 807 /allele="heterozygous allele" /replace="a" regulatory 1022..1027 /map="15q24" /gene="CHRNA5" /regulatory_class="polyA_signal_sequence" polyA_site 1046 /gene="CHRNA5" BASE COUNT 340 a 181 c 217 g 323 t ORIGIN 1 tgatgtccgt gaggttgttg aagattggaa attcatagcc caggttcttg atcggatgtt 61 tctgtggact tttcttttcg tttcaattgt tggatctctt gggctttttg ttcctgttat 121 ttataaatgg gcaaatatat taataccagt tcatattgga aatgcaaata agtgaagcct 181 cccaagggac tgaagtatac atttagttaa cacacatata tctgatggca cctataaaat 241 tatgaaaatg taagttatgt gttaaattta gtgcaagctt taacagacta agttgctaac 301 ctcaatttat gttaacagat gatccatttg aacagttggc tgtatgactg aagtaataac 361 tgatgagata catttgatct tgtaaaaata gcaaaatatt atctgaactg gactagtgaa 421 aaatctagta tttgtatcct ggcaaataat actaatttat aatccacagt aaagttcatc 481 ctttgactgt gctggagaat tccagttgta tttgaagact gattttaaaa cttttctgca 541 tttggtaaag gtatgtaaac tttcctgcac tcactgagta acagctaatc tttaatataa 601 tattatactg ctatatttaa aaagctgact acttgatata attacttaat gtgatgcttg 661 atataataat tacttaatgt ggccgggcac ggtggctcac acctgtaatc ccagcacttt 721 gggaggtcga ggtgggcgta tcacctgagg ttgggagttc gagaccagcc tgaccaacgt 781 ggagaaaccc cgtctctact aaaaatgtga aattagccag ggtggtggtg cacacctgta 841 atcccagcta cctgggaggc tgcggcagga gaatcgcttg aacccaggtg gcggaggttg 901 cggtgagctg agatcacgcc attgcactcc agcctgggca acaagagcaa aactcagtct 961 caaataataa taataacaac aacttaatgt gctgctgctt ttccataacc aacattttaa 1021 aaataaatga aaaacaggaa ttgggaaaaa aaaaaaaaaa a //