LOCUS       AJ584705                1061 bp    mRNA    linear   HUM 14-NOV-2006
DEFINITION  Homo sapiens partial mRNA for neuronal nicotinic acetylcholine
            receptor alpha 5 subunit, splice variant 1, (CHRNA5 gene).
ACCESSION   AJ584705
VERSION     AJ584705.1
KEYWORDS    alpha5 subunit; alternative splicing; CHRNA5 gene; neuronal
            nicotinic acetylcholine receptor.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Solda G.
  JOURNAL   Submitted (26-SEP-2003) to the INSDC. Solda G., Biology and
            Genetics for Medical Science, University of Milan, v. Viotti 3/5,
            20133 Milan, ITALY.
REFERENCE   2
  AUTHORS   Solda G., Boi S., Duga S., Fornasari D., Benfante R., Malcovati M.,
            Tenchini M.L.
  TITLE     In vivo RNA-RNA duplexes from human alpha3 and alpha5 nicotinic
            receptor subunit mRNAs
  JOURNAL   Gene 345(2), 155-164(2005).
   PUBMED   15716100
FEATURES             Location/Qualifiers
     source          1..1061
                     /db_xref="H-InvDB:HIT000249160"
                     /organism="Homo sapiens"
                     /chromosome="15"
                     /map="15q24"
                     /mol_type="mRNA"
                     /cell_line="SY5Y human neuroblastoma"
                     /db_xref="taxon:9606"
     mRNA            <1..1046
                     /gene="CHRNA5"
                     /note="alternative"
                     /note="splice variant 1, short 3'UTR"
     CDS             <1..175
                     /codon_start=2
                     /gene="CHRNA5"
                     /product="neuronal nicotinic acetylcholine receptor,
                     alpha5 subunit"
                     /note="alternative"
                     /note="splice variant 1, short 3'UTR"
                     /db_xref="GOA:Q6EWN4"
                     /db_xref="H-InvDB:HIT000249160.13"
                     /db_xref="InterPro:IPR006029"
                     /db_xref="InterPro:IPR006201"
                     /db_xref="InterPro:IPR036719"
                     /db_xref="UniProtKB/TrEMBL:Q6EWN4"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /protein_id="CAE48367.1"
                     /translation="DVREVVEDWKFIAQVLDRMFLWTFLFVSIVGSLGLFVPVIYKWA
                     NILIPVHIGNANK"
     3'UTR           176..1046
                     /gene="CHRNA5"
                     /note="splice variant 1, short 3'UTR"
     variation       568
                     /allele="heterozygous allele"
                     /replace="t"
     repeat_region   681..964
                     /rpt_family="Alu-Sp"
                     /experiment="experimental evidence, no additional details
                     recorded"
     variation       778
                     /allele="heterozygous allele"
                     /replace="t"
     variation       807
                     /allele="heterozygous allele"
                     /replace="a"
     regulatory      1022..1027
                     /map="15q24"
                     /gene="CHRNA5"
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      1046
                     /gene="CHRNA5"
BASE COUNT          340 a          181 c          217 g          323 t
ORIGIN      
        1 tgatgtccgt gaggttgttg aagattggaa attcatagcc caggttcttg atcggatgtt
       61 tctgtggact tttcttttcg tttcaattgt tggatctctt gggctttttg ttcctgttat
      121 ttataaatgg gcaaatatat taataccagt tcatattgga aatgcaaata agtgaagcct
      181 cccaagggac tgaagtatac atttagttaa cacacatata tctgatggca cctataaaat
      241 tatgaaaatg taagttatgt gttaaattta gtgcaagctt taacagacta agttgctaac
      301 ctcaatttat gttaacagat gatccatttg aacagttggc tgtatgactg aagtaataac
      361 tgatgagata catttgatct tgtaaaaata gcaaaatatt atctgaactg gactagtgaa
      421 aaatctagta tttgtatcct ggcaaataat actaatttat aatccacagt aaagttcatc
      481 ctttgactgt gctggagaat tccagttgta tttgaagact gattttaaaa cttttctgca
      541 tttggtaaag gtatgtaaac tttcctgcac tcactgagta acagctaatc tttaatataa
      601 tattatactg ctatatttaa aaagctgact acttgatata attacttaat gtgatgcttg
      661 atataataat tacttaatgt ggccgggcac ggtggctcac acctgtaatc ccagcacttt
      721 gggaggtcga ggtgggcgta tcacctgagg ttgggagttc gagaccagcc tgaccaacgt
      781 ggagaaaccc cgtctctact aaaaatgtga aattagccag ggtggtggtg cacacctgta
      841 atcccagcta cctgggaggc tgcggcagga gaatcgcttg aacccaggtg gcggaggttg
      901 cggtgagctg agatcacgcc attgcactcc agcctgggca acaagagcaa aactcagtct
      961 caaataataa taataacaac aacttaatgt gctgctgctt ttccataacc aacattttaa
     1021 aaataaatga aaaacaggaa ttgggaaaaa aaaaaaaaaa a
//