LOCUS AJ564935 2285 bp mRNA linear HUM 22-JAN-2004 DEFINITION Homo sapiens mRNA for protocadherin (PCDHX gene), exon 5.2. ACCESSION AJ564935 VERSION AJ564935.1 KEYWORDS PCDHX gene; protocadherin. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2285) AUTHORS Blanco-Arias P. JOURNAL Submitted (03-JUN-2003) to the INSDC. Blanco-Arias P., Pathology, University of Cambridge, Tennis Court Rd, CB2 1QP, UNITED KINGDOM. REFERENCE 2 AUTHORS Blanco-Arias P., Sargent C.A., Affara N.A. TITLE Protocadherin X ( PCDHX) and Y ( PCDHY) genes; multiple mRNA isoforms encoding variant signal peptides and cytoplasmic domains JOURNAL Mamm. Genome 15(1), 41-52(2004). PUBMED 14727141 FEATURES Location/Qualifiers source 1..2285 /db_xref="H-InvDB:HIT000248815" /organism="Homo sapiens" /map="Xq21.3" /mol_type="mRNA" /db_xref="taxon:9606" CDS <1..>2285 /codon_start=1 /gene="PCDHX" /product="protocadherin" /note="exon 5.2" /db_xref="GOA:Q9BZA7" /db_xref="H-InvDB:HIT000248815.12" /db_xref="HGNC:HGNC:8656" /db_xref="InterPro:IPR002126" /db_xref="InterPro:IPR013164" /db_xref="InterPro:IPR013585" /db_xref="InterPro:IPR015919" /db_xref="InterPro:IPR020894" /db_xref="UniProtKB/Swiss-Prot:Q9BZA7" /protein_id="CAD92414.1" /translation="SQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDG GFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENA KIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAM VLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTC FTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKV KDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPEFS LDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH NEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNIS FDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPS TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGL HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNTEIADVS SPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENR QMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYN WVTTPTTFKPDSPDLARHYKSA" BASE COUNT 737 a 485 c 471 g 592 t ORIGIN 1 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa 61 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag 121 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt gagtgttact 181 gatacaaatg acaaccaccc agtctttaag gagacagaga ttgaagtcag tataccagaa 241 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa 301 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt 361 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca 421 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg 481 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc 541 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt 601 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca 661 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact 721 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat 781 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat 841 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct 901 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag 961 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc 1021 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt 1081 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt 1141 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca 1201 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga 1261 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca 1321 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact 1381 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc 1441 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt 1501 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct 1561 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca 1621 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat 1681 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat 1741 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca 1801 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata 1861 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc 1921 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca 1981 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa 2041 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac 2101 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga 2161 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat 2221 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa 2281 tctgc //