LOCUS AJ564934 3218 bp mRNA linear HUM 22-JAN-2004
DEFINITION Homo sapiens mRNA for protocadherin (PCDHX gene), exon 5.1.
ACCESSION AJ564934
VERSION AJ564934.1
KEYWORDS PCDHX gene; protocadherin.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3218)
AUTHORS Blanco-Arias P.
JOURNAL Submitted (03-JUN-2003) to the INSDC. Blanco-Arias P., Pathology,
University of Cambridge, Tennis Court Rd, CB2 1QP, UNITED KINGDOM.
REFERENCE 2
AUTHORS Blanco-Arias P., Sargent C.A., Affara N.A.
TITLE Protocadherin X ( PCDHX) and Y ( PCDHY) genes; multiple mRNA
isoforms encoding variant signal peptides and cytoplasmic domains
JOURNAL Mamm. Genome 15(1), 41-52(2004).
PUBMED 14727141
FEATURES Location/Qualifiers
source 1..3218
/db_xref="H-InvDB:HIT000248814"
/organism="Homo sapiens"
/map="Xq21.3"
/mol_type="mRNA"
/db_xref="taxon:9606"
CDS <1..2526
/codon_start=1
/gene="PCDHX"
/product="protocadherin"
/note="exon 5.1"
/db_xref="GOA:Q9BZA7"
/db_xref="H-InvDB:HIT000248814.13"
/db_xref="HGNC:HGNC:8656"
/db_xref="InterPro:IPR002126"
/db_xref="InterPro:IPR013164"
/db_xref="InterPro:IPR013585"
/db_xref="InterPro:IPR015919"
/db_xref="InterPro:IPR020894"
/db_xref="UniProtKB/Swiss-Prot:Q9BZA7"
/protein_id="CAD92413.1"
/translation="SQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMKVKVEDG
GFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDADIGENA
KIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGLMPARAM
VLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADHNGRVTC
FTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAMLFIKV
KDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPEFS
LDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
NEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNIS
FDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPS
TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGL
HRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNTEIADVS
SPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENR
QMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYN
WVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSI
SKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPVGIQVSNTTF"
BASE COUNT 1040 a 674 c 634 g 870 t
ORIGIN
1 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa
61 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag
121 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt gagtgttact
181 gatacaaatg acaaccaccc agtctttaag gagacagaga ttgaagtcag tataccagaa
241 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa
301 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt
361 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca
421 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg
481 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc
541 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt
601 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca
661 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact
721 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat
781 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat
841 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct
901 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag
961 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc
1021 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt
1081 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt
1141 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca
1201 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga
1261 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca
1321 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact
1381 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc
1441 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt
1501 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct
1561 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca
1621 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat
1681 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat
1741 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca
1801 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata
1861 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc
1921 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca
1981 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa
2041 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac
2101 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga
2161 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat
2221 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa
2281 tctgcctctc cacagcctgc cttccaaatt cagcctgaaa ctcccctgaa ttcgaagcac
2341 cacatcatcc aagaactgcc tctcgataac acctttgtgg cctgtgactc tatctccaag
2401 tgttcctcaa gcagttcaga tccctacagc gtttctgact gtggctatcc agtgacgacc
2461 ttcgaggtac ctgtgtccgt acacaccaga ccggtaggta tccaagtttc taacacaact
2521 ttctaactat ttttttatta ttattttcag ttgatgtaga actttacaaa atctattgac
2581 ttcaaagagg gatcaaaaca atcatattct acagatgtac ccaatagata tatggattca
2641 attaagtttg gtagaagatg agaacaaaat aactactgat ttaggaaaat tggatgcaga
2701 ataataatta tagtaggggc aattttgtct gtagatggca gtatgacaat tcttgctaga
2761 gaatatattg aaaaaaactt caacacaaag ggttgtagca ctgtcctcag taccattgtg
2821 tgcatgagga tcagaatagt ctgggctaga tacatcacat taaagctttt cagaatctga
2881 taaatagctc taaatactaa tgatattgag aagcctagct tcacttggga aaatctgtgg
2941 ctgttcacag aaattcagca ccaagttatt ccccccatac tctaccaggc cttcaggtcc
3001 tcataaagaa aagtgtcgtt ttcagattag gaactcaaaa ttattttggt gcatcaaatc
3061 tacagtcaca caatataaca agaatgggat tagaaaaatg aaagcctact cattctcatc
3121 tttaagccag agaatgaaat atatatgagg tctctggata gctatttaaa tatttgcata
3181 tttatgcaag gtattttgag cccttcagaa gacattct
//