LOCUS AJ505016 2126 bp mRNA linear HUM 07-OCT-2008
DEFINITION Homo sapiens mRNA for retinoblastoma-associated factor 600-like
protein (RBAF600 gene), mutant allele.
ACCESSION AJ505016
VERSION AJ505016.1
KEYWORDS RBAF600 gene; retinoblastoma-associated factor 600-like protein.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2126)
AUTHORS Lennerz V.
JOURNAL Submitted (06-AUG-2002) to the INSDC. Lennerz V., III. Medizinische
Klinik, Johannes Gutenberg-University of Mainz, Langenbeckstrasse
1, 55101 Mainz, GERMANY.
REFERENCE 3
AUTHORS Lennerz V., Fatho M., Gentilini C., Frye R.A., Lifke A., Ferel D.,
Woelfel C., Huber C., Woelfel T.
TITLE The response of autologous T cells to a human melanoma is dominated
by mutated neoantigens
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 102(44), 16013-16018(2005).
PUBMED 16247014
COMMENT Related sequence: AF348492
FEATURES Location/Qualifiers
source 1..2126
/db_xref="H-InvDB:HIT000248310"
/organism="Homo sapiens"
/mol_type="mRNA"
/country="Germany"
/sex="female"
/cell_line="MZ7-MEL"
/cell_type="melanoma"
/db_xref="taxon:9606"
CDS 41..1807
/gene="RBAF600"
/product="retinoblastoma-associated factor 600-like
protein"
/note="mutant"
/db_xref="GOA:Q5T4S7"
/db_xref="H-InvDB:HIT000248310.14"
/db_xref="HGNC:HGNC:30313"
/db_xref="InterPro:IPR003126"
/db_xref="InterPro:IPR016024"
/db_xref="InterPro:IPR025704"
/db_xref="InterPro:IPR036322"
/db_xref="UniProtKB/Swiss-Prot:Q5T4S7"
/experiment="experimental evidence, no additional details
recorded"
/protein_id="CAD43719.1"
/translation="MLLDQINSTFVRSNPSVLQGLLRIIPYLSFGEVEKMQILVERFK
PYCNFDKYDEDHSGDDKVFLDCFCKIAAGIKNNSNGHQLKDLILQKGITQNALDYMKK
HIPSAKNLDADIWKKFLSRPALPFILRLLRGLAIQHPGTQVLIGTDSIPNLHKLEQVS
SDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNE
KGQVVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEELENKP
RKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKCNGLLPVWRPHVPE
SAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNI
HLIPYIIHTVLYVLNTTRATSREEKNLQGFLEQPKEKWVESAFEVDGPYYFTVLALHI
LPPEQWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSAYRSSLLFWALVDLI
YNMFKKVPTSNTEGGWSCSLAEYIRHNDMPIYEAADKALKTFQEEFMPVETFSEFLDV
AGLLSEITDPESFLKDLLNSVP"
variation 1025
/replace="g"
BASE COUNT 513 a 597 c 558 g 458 t
ORIGIN
1 gggcaacctc ctcctgacag gtgacaagga tcaactggtg atgctcttgg accagatcaa
61 cagcaccttt gttcgctcca accccagtgt gctccagggc ctgcttcgca tcatcccgta
121 cctttccttt ggagaggtgg agaaaatgca gatcttggtg gagcgattca aaccatactg
181 caactttgat aaatatgatg aagatcacag tggtgatgat aaagtcttcc tggactgctt
241 ctgtaaaata gctgctggca tcaagaacaa cagcaatggg caccagctga aggatctgat
301 tctccagaag gggatcaccc agaatgcact tgactacatg aaaaagcaca tccctagcgc
361 caagaatttg gatgccgaca tctggaaaaa gtttttgtct cgcccagcct tgccatttat
421 cctaaggctg cttcggggcc tggccatcca gcaccctggc acccaggttc tgattggaac
481 tgattccatc ccgaacctgc ataagctgga gcaggtgtcc agtgatgagg gcattgggac
541 cttggcagag aacctgctgg aagccctgcg ggaacaccct gacgtaaaca agaagattga
601 cgcagcccgc agggagaccc gggcagagaa gaaacgcatg gccatggcaa tgaggcagaa
661 ggccctgggc accctgggca tgacgacaaa tgaaaagggc caggtcgtga ccaagacagc
721 actcctgaag cagatggaag agctgatcga ggagcctggc ctcacgtgct gcatctgcag
781 ggagggatac aagttccagc ccacaaaggt cctgggcatt tataccttca cgaagcgggt
841 agccttggag gagttggaga ataagccccg gaaacagcag ggctacagca ccgtgtccca
901 cttcaacatt gtgcactacg actgccatct ggctgccgtc aggttggctc gaggccggga
961 agagtgggag agtgccgccc tgcagaatgc caacaccaag tgcaacgggc tccttccggt
1021 ctggagacct catgtccctg aatcagcttt tgccacttgc ttggcaagac acaacactta
1081 cctccaggaa tgtacaggcc agcgggagcc cacgtatcag ctcaacatcc acgacatcaa
1141 actgctcttc ctgcgcttcg ccatggagca gtcgttcagc gcagacactg gcgggggcgg
1201 ccgggagagc aacatccacc tgatcccgta catcattcac actgtgcttt acgtcctgaa
1261 cacaacccga gcaacttccc gagaagagaa gaacctccaa ggctttctgg aacagcccaa
1321 ggagaagtgg gtggagagtg cctttgaagt ggacgggccc tactatttca cagtcttggc
1381 ccttcacatc ctgccccctg agcagtggag agccacacgt gtggaaatct tgcggaggct
1441 gttggtgacc tcgcaggctc gggcagtggc tccaggtgga gccaccaggc tgacagataa
1501 ggcagtgaag gactattccg cttaccgttc ttcccttctc ttttgggccc tcgtcgatct
1561 catttacaac atgtttaaga aggtgcctac cagtaacaca gagggaggct ggtcctgctc
1621 tctcgctgag tacatccgcc acaacgacat gcccatctac gaagctgccg acaaagccct
1681 gaaaaccttc caggaggagt tcatgccagt ggagaccttc tcagagttcc tcgatgtggc
1741 cggtctttta tcagaaatca ccgatccaga gagcttcctg aaggacctgt tgaactcagt
1801 cccctgacca ccacacagca gctgcggcgg cgaagacgaa gctggcttgc cttccaccct
1861 ctgttctccc tccttgtgca ttaagttccc tccgcgggat gctgcattgt taccccgccc
1921 tcccctctct catttttctt ggtgtggctt ggggttttta ggcttcctgt tttatctcgt
1981 gtgtgtggtg caccagctat gaggttgtct gtaacccaag ccatcaaagg gcctgtacat
2041 acctaggagc catgagttgt cccggccagc ttcatactga gtgtgcacat ctgagaaata
2101 aacaagtgac taacacacat tgaaag
//