LOCUS AJ491324 8194 bp mRNA linear HUM 21-OCT-2008
DEFINITION Homo sapiens mRNA for retinitis pigmentosa 1-like protein 1 (RP1L1P
gene).
ACCESSION AJ491324
VERSION AJ491324.2
KEYWORDS retinitis pigmentosa 1-like protein 1; RP1L1P gene.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 8194)
AUTHORS Conte I.
JOURNAL Submitted (24-JUN-2002) to the INSDC. Conte I., Human Genetics,
Institute of Genetics and Biophysics, Via P.Castellino, 111, 80129,
ITALY.
REMARK revised by author [18-NOV-2002]
REFERENCE 3
AUTHORS Conte I., Lestingi M., den Hollander A., Alfano G., Ziviello C.,
Pugliese M., Circolo D., Caccioppoli C., Ciccodicola A., Banfi S.
TITLE Identification and characterisation of the retinitis pigmentosa
1-like1 gene (RP1L1): a novel candidate for retinal degenerations
JOURNAL Eur. J. Hum. Genet. 11(2), 155-162(2003).
PUBMED 12634863
FEATURES Location/Qualifiers
source 1..8194
/db_xref="H-InvDB:HIT000248197"
/organism="Homo sapiens"
/chromosome="8"
/map="8p23.1"
/mol_type="mRNA"
/dev_stage="adult"
/tissue_type="retina"
/db_xref="taxon:9606"
CDS 277..7671
/gene="RP1L1P"
/product="retinitis pigmentosa 1-like protein 1"
/db_xref="GOA:Q8IWN7"
/db_xref="H-InvDB:HIT000248197.12"
/db_xref="HGNC:HGNC:15946"
/db_xref="InterPro:IPR003533"
/db_xref="InterPro:IPR036572"
/db_xref="InterPro:IPR040163"
/db_xref="UniProtKB/Swiss-Prot:Q8IWN7"
/experiment="experimental evidence, no additional details
recorded"
/protein_id="CAD36957.1"
/translation="MNSTPRNAQAPSHRECFLPSVARTPSVTKVTPAKKITFLKRGDP
RFAGVRLAVHQRAFKTFSALMDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCY
LCSDKKPPKTPSGPGRPQERNPTAQQLRDVEGQREAPGTSSSRKSLKTPRRILLIKNM
DPRLQQTVVLSHRNTRNLAAFLGKASDLLRFPVKQLYTTSGKKVDSLQALLHSPSVLV
CAGHEAFRTPAMKNARRSEAETLSGLTSRNKNGSWGPKTKPSVIHSRSPPGSTPRLPE
RPGPSNPPVGPAPGRHPQDTPAQSGPLVAGDDMKKKVRMNEDGSLSVEMKVRFHLVGE
DTLLWSRRMGRASALTAASGEDPVLGEVDPLCCVWEGYPWGFSEPGVWGPRPCRVGCR
EVFGRGGQPGPKYEIWTNPLHASQGERVAARKRWGLAQHVRCSGLWGHGTAGRERCSQ
DSASPASSTGLPEGSEPESSCCPRTPEDGVDSASPSAQIGAERKAGGSLGEDPGLCID
GAGLGSPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQ
EASEGGDPASPALSLSSLRSDDLQAETQGQGTEQATGAAVTREPLVLGLSCSWDSEGA
SSTPSTCTSSQQGQRRHRSRASAMSSPSSPGLGRVAPRGHPRHSHYRKDTHSPLDSSV
TKQVPRPPERRRACQDGSVPRYSGSSSSTRTQASGNLRPPSSGSLPSQDLLGTSSATV
TPAVHSDFVSGVSPHNAPSAGWAGDAGSRTCSPAPIPPHTSDSCSKSGAASLGEEARD
TPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPAQEAQRGPSPEASWLCGRYCPTP
PRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSAS
QGAGSRGLSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMT
YELADETTGAAGGGLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLG
SSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMRA
LMGSKQGRPSSVPEVSRPMARRLSCSAGALITCLASLQLFEEDLGSPASKVRFKDSPR
YQELLSISKDLWPGCDVGEDQLDSGLWELTWSQALPDLGSHAMTENFTPTSSSGVDIS
SGSGGSGESSVPCAMDGTLVTQGTELPLKTSNQRPDSRTYESPGDLENQQQCCFPTFL
NARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEETKEGTEGEGLQEEGV
QLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEGLQEEGVQLEETKTEEG
LQEEGVQLEETKTEEGLQEEGVQLEGTKETEGEGQQEEEAQLEEIEETGGEGLQEEGV
QLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEE
EAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASERQSGSQLEPGLEKPPGATMMGQ
EHTQAQPTQGAAERSSSVACSAALDCDPIWVSVLLKKTEKAFLAHLASAVAELRARWG
LQDNDLLDQMAAELQQDVAQRLQDSTKRELQKLQGRAGRMVLEPPREALTGELLLQTQ
QRRHRLRGLRNLSAFSERTLGLGPLSFTLEDEPALSTALGSQLGEEAEGEEFCPCEAC
VRKKVSPMSPKATMGATRGPIKEAFDLQQILQRKRGEHTDGEAAEVAPGKTHTDPTST
RTVQGAEGGLGPGLSQGPGVDEGEDGEGSQRLNRDKDPKLGEAEGDAMAQEREGKTHN
SETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIE
APEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPE
AEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEG
QTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQ
EAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAE
GEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQ
PESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPE
AEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESE
GETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSPGGDTPHQRPGSQTGPSS
SRASSWGNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAPLG
SRTPEQGASEGYDLQEDQALGSLAPTEAVGRADGFGQDDLDF"
BASE COUNT 1967 a 2256 c 2789 g 1182 t
ORIGIN
1 ggcaggtctc tgtgcaaatg gaccatctgt tggagctcag gaggctgggc tcctgcccaa
61 gggactgggg cctcaggctc tcaggccaag gagagtggcc ccgaggactg tccggaggag
121 ggtggccagc cctgctgccc agagggactg agccatggca gggaaggagg cggtgttccc
181 cctggcctga ctttctccaa aggacgtccc cctgaggctt aggggctgag ccatgccctt
241 gtgctccctg gaggacgcgg ccagagcccc cacaccatga acagcacccc caggaatgcc
301 caggccccga gccaccgtga gtgcttcctg ccctctgtgg ctcgcacccc ctcggtcacc
361 aaggtcacgc cagccaagaa gatcaccttc ctcaagcgag gggatccacg gtttgctggg
421 gtccgcctgg ccgttcacca gcgcgccttt aagaccttca gcgccctcat ggacgagctc
481 tcccagcgcg tgcctctctc ctttggggtg cgctctgtca ccacaccccg gggcctgcat
541 agcctcagcg ccctggagca gctggaagat ggaggctgct acctctgctc tgataagaag
601 ccccccaaga cccccagtgg accaggccgg ccacaggaga gaaaccccac tgctcagcag
661 ttgcgggatg tcgaaggcca gcgtgaagcc ccaggcacct cctcctcccg gaagagtctt
721 aaaacccccc ggaggatact gctgattaag aacatggacc ctcgcctcca gcagacagtg
781 gttctcagtc acaggaatac taggaacctg gccgcctttc tcggcaaagc ctcagatctc
841 ctgcgctttc ctgtgaagca gttgtacacg accagcggga aaaaggtgga ctcgctgcag
901 gccctgctgc acagcccctc tgtgctggtg tgtgccgggc atgaggcctt cagaacccca
961 gccatgaaaa atgccaggag aagcgaggct gaaactttat ctgggctgac ttcaagaaac
1021 aaaaacggga gctgggggcc aaagaccaag ccgagtgtga tccattcgcg gtctccgcca
1081 ggcagcacgc cacggctgcc agaaaggcct ggtcctagca accccccggt gggccctgct
1141 cctggcaggc accctcagga cacgccagct cagtcgggcc cgctggtggc tggcgatgac
1201 atgaagaaga aggtccgcat gaatgaggac ggcagcctgt ccgtggagat gaaagtccgc
1261 ttccacctgg tcggcgagga cacgctccta tggtcccgga ggatgggcag ggccagcgcc
1321 ctcacggcag ccagtgggga agaccccgtt ctgggggagg tagaccccct ctgctgtgtg
1381 tgggagggct acccttgggg cttctcagag cctggggtgt ggggaccccg gccctgcagg
1441 gtgggatgca gggaagtctt tggccgaggc gggcagccag ggcccaagta tgaaatctgg
1501 acgaatcccc tgcatgcctc ccagggagag agagtggcag ctcggaagag gtggggactg
1561 gcccagcacg tccgctgcag tggcctgtgg ggccacggga ctgccgggag ggagagatgc
1621 agccaggaca gtgccagccc agcctccagc accggcctcc ccgagggctc ggagccagag
1681 tcctcctgct gccccaggac cccggaggac ggggtggaca gtgccagccc ctctgcccag
1741 ataggggctg agcggaaagc tggagggagc ctgggtgagg accccggcct atgcatagat
1801 ggagcagggc tgggcagccc agagcaaggc ggccgcctga caccgagggc ccggagtgag
1861 gagggggctt cttcggactc gtcagccagc accggctctc atgagggatc cagcgaatgg
1921 ggtgggcggc cccagggctg tccaggcaag gcaagggccg agacctctca gcaggaggcc
1981 agcgagggag gcgaccccgc ttctccagcc ctgagtcttt catctttaag gagtgacgac
2041 ctgcaggcag agacgcaagg acagggtacc gagcaggcca cgggagcggc tgtgacaagg
2101 gagcctctgg ttctgggcct ttcctgctcc tgggactcgg aaggagcctc ttccacccct
2161 tccacctgca cttcatccca gcaggggcag agaaggcaca gaagccgggc cagtgcaatg
2221 tcctcaccca gcagccctgg ccttggccga gtggccccga gaggccatcc caggcattct
2281 cactaccgca aggacaccca cagcccactg gactcctctg taaccaagca agtgccgagg
2341 cctcctgagc ggcgaagggc ctgccaggat ggctcagtgc cacgatattc tggaagctca
2401 tcgagcacca ggacacaggc ctctgggaac ctgagacctc cctcctcggg ctctcttcct
2461 tcccaggacc ttctgggaac cagcagtgcc actgtcaccc ctgcagtcca ctcggatttt
2521 gtttctggag tctccccgca caacgctccc tctgccgggt gggcagggga cgcggggtcc
2581 aggacatgct cgccggcccc catacctccc cacacatccg actcctgctc aaaatctggg
2641 gctgccagcc tgggggaaga ggccagggac acgcctcagc cctcctcacc cttggttctg
2701 caggttggac ggcctgagca aggggcggtg ggcccccacc gaagccactg ctgctcacag
2761 cctgggacgc agccggccca agaggcccag cggggaccct cccctgaggc tagctggctg
2821 tgtggcaggt actgtcccac cccgcccagg gggcggccct gcccccagag gcgctcttcc
2881 agctgtggga gcaccggcag cagccaccaa agcactgccc gggggccagg tgggagcccg
2941 caggagggga cacgccagcc aggccccacg ccgtccccag gccccaattc aggggcatca
3001 aggagaagca gtgccagcca gggtgcgggg tctcgggggc tgtccgagga gaagaccttg
3061 aggagtgggg gaggccccca ggggcaggag gaggccagtg gtgtgtcacc cagctctctg
3121 ccccgctcgt ctccagaggc tgtggtccgc gaatggctgg acaacattcc agaagagccc
3181 atactcatga catatgagtt ggcggacgag accacaggtg cagctggggg tggcctgaga
3241 ggccccgagg tggaccctgg ggatgaccat tctctggaag gcctggggga gccagctcag
3301 gcgggacagc agtccctgga aggggacccc ggccaggacc cagagccaga gggagccctc
3361 ctggggagta gtgacactgg tccccaatca ggagagggtg tcccccaagg ggcagctcca
3421 gagggagttt ccgaggcccc tgcagaggcc ggagcagaca gagaggcccc agcaggctgc
3481 agggtgagcc tgcgggcact tcctggccgg gtgtctgcct ccacgcagat catgagggcg
3541 ctgatgggct ccaagcaggg ccggcccagc agcgtgcccg aagtgtctag gcccatggcc
3601 aggaggctca gctgctcagc cggggccctc attacttgtc tggccagtct gcagttattt
3661 gaggaagacc ttgggtctcc tgccagcaaa gtgaggttca aagactcccc tcggtaccag
3721 gagctgctca gcatctcgaa ggacctgtgg ccaggatgtg acgttgggga agaccagctg
3781 gactcaggcc tctgggagct cacatggagc caggctctgc cagaccttgg gtcccatgcc
3841 atgacggaga acttcacgcc cacatcctcc tctggtgtgg acatcagcag cggctctgga
3901 ggctcagggg agagtagcgt accctgtgcc atggacggca ccctggtgac acaggggaca
3961 gagctgcccc tgaaaacctc caaccagagg cctgattcaa gaacttatga gagcccaggg
4021 gatctggaaa accaacagca gtgttgtttc ccaaccttct tgaacgcccg agcctgcgct
4081 tgtgccacca atgaggatga agcagaaaga gacagtgagg agcagagggc gagctcgaac
4141 ctggagcagt tagctgaaaa cacagtgcaa gaagaggtgc aattagagga aactaaagaa
4201 ggaacagaag gagaagggct gcaagaagag ggggtgcagt tagaggaaac taaaacagaa
4261 gaagggctgc aagaagaggg ggtgcagtta gaggaaacta aaacagaaga agggctgcaa
4321 gaagaggggg tgcagttaga ggaaactaaa acagaagaag ggctgcaaga agagggggtg
4381 cagttagagg aaactaaaac agaagaaggg ctgcaagaag agggggtgca gttagaggaa
4441 actaaaacag aagaagggct gcaagaagag ggggtgcagt tagaggggac taaagaaacg
4501 gaaggagaag gacagcaaga agaagaggcg cagttagagg aaattgaaga aacaggagga
4561 gaagggctgc aagaagaggg ggtgcagtta gaggaagtta aagaagggcc agaaggagga
4621 ctgcaaggag aggctcttga agagggtctc aaagaggaag gacttccaga agaaggaagc
4681 gtccacgggc aggaattgtc agaggccagc tctccggatg ggaaaggctc ccaggaagat
4741 gacccagtcc aggaggagga agcaggaaga gcctctgcct ctgcagagcc gtgccccgca
4801 gagggcacag aggaacccac agagccccct agtcatctca gcgagacgga cccaagtgcc
4861 agcgagaggc agagtggctc ccagcttgag cctggtttgg aaaagccgcc cggagccacc
4921 atgatgggcc aagagcacac gcaggcccaa cccacccagg gggctgcaga gaggagctct
4981 tcggtggcct gcagcgcggc tctggactgc gaccccatct gggtgtccgt gttactgaag
5041 aagacggaga aggccttcct ggcccacctt gccagtgcgg tggctgagct ccgagcacgc
5101 tggggcctgc aggacaatga tctgctggac cagatggcgg ccgagctgca gcaggacgtg
5161 gcccaacgcc tccaggacag caccaagaga gagctccaga agctccaggg ccgggcgggt
5221 aggatggtgc tggagcctcc aagggaggcc ctcaccgggg agctgctcct gcagacccag
5281 cagcgcagac accgtctccg gggcctgcga aacctctcgg ccttctctga gcggaccctg
5341 ggcctggggc ccctctcctt caccctggag gacgagccag ccctcagcac agccctgggg
5401 agccagctgg gcgaggaggc ggagggggag gagttctgtc cctgcgaggc ctgcgtgagg
5461 aagaaagtga gccctatgtc ccccaaggcc acaatggggg caaccagagg tcccatcaaa
5521 gaggcctttg acctgcagca gattctgcag aggaagaggg gagaacacac tgatggggag
5581 gcagcagagg tggcccctgg caagacccac acggacccca cgagcactag gactgtccag
5641 ggagctgagg gagggctggg gccggggctg agccaggggc ctggagtgga cgagggtgag
5701 gatggcgagg ggagccagag actcaacaga gacaaagatc ccaaactcgg ggaggcagag
5761 ggagatgcaa tggctcagga gagagaaggg aaaacccaca acagtgaaac cagtgcgggc
5821 agtgagttgg gggaagctga gcaggaggga gagggcataa gtgaaagggg agaaactggg
5881 ggtcaaggct ctgggcatga ggacaacttg cagggtgaag ctgcggcagg aggtgaccaa
5941 gatccaggac agagtgatgg ggccgaaggc atagaggccc cggaggctga aggggaggcc
6001 cagccagagt cagaaggtgt agaggcccca gaggcagaag gggatgccca ggaggctgaa
6061 ggggaggccc agccagagtc agaagatgta gaggccccag aggcagaagg agaggcccag
6121 ccagagtcag aagatgtaga gaccccagag gcagaatggg aggtccagcc agagtcagaa
6181 ggtgcagaag ccccggaggc agaaaaggag gcccagccag agacagaaag tgtagaggcc
6241 ctggagactg aaggggagga cgagccagag tcagaaggtg cagaggccca agaggcagaa
6301 gaggcggccc aggaggcaga agggcagacc cagccagagt cagaagttat agagtcccag
6361 gaggcagaag aggaagccca gccagagtca gaagatgtag aggccctgga ggttgaagtg
6421 gagacccagg aggcagaagg ggaggcccag ccagagtcag aagatgtaga ggccccagag
6481 gctgaagggg agatgcaaga ggcagaagag gaggcccagc cagagtcaga cggtgtagag
6541 gcccagccaa agtcagaagg tgaagaggcc caggaggttg aaggggagac ccagaagaca
6601 gaaggggatg cccagccaga gtcagacggt gtagaggccc cggaggcaga agaggaggca
6661 caggaggctg aaggggaggt ccaggaggca gaaggggagg cccacccaga gtcagaagat
6721 gtagatgccc aggaggcaga aggggaggcc cagccagaat cagaaggtgt agaggcccca
6781 gaggcagaag gggaggccca gaaggcagaa ggtatagagg ccccagagac tgaaggggag
6841 gcccagccag agtcagaagg tatagaggcc ccagaggctg aaggggaggc ccagcctgag
6901 tcagaaggtg tagaggccca ggatgcagaa ggggaggccc agccagagtc agaaggtata
6961 gaggcccagg aggctgaaga ggaggcccaa ccagagttag aaggtgtaga ggccccagag
7021 gcagaagggg aggcccagcc agagtcagaa ggtatagagg ccccagaggc agaaggggag
7081 gcccaaccag agttagaagg tgtagaggcc ccggaggctg aagaggaggc ccagccagag
7141 ccagaaggcg tagagacccc ggaggctgaa ggggaggccc agccagagtc agaaggagaa
7201 actcaaggtg agaaaaaggg gagccctcag gtcagtctag gagatggcca atctgaggag
7261 gcttctgaaa gcagcagccc agtccctgag gacaggccca ctccaccccc ttccccaggt
7321 ggagacactc cccaccaaag gccaggctcc caaacaggcc cttcctcctc cagagcatcc
7381 tcttggggca actgctggca gaaagactca gaaaatgacc atgtacttgg agacacaagg
7441 agccctgatg ccaagtccac ggggacccct catgcagaga ggaaggccac caggatgtac
7501 ccagaaagtt ctacttctga gcaagaagag gcccctttgg gctcaaggac tccagagcag
7561 ggggccagtg aaggttatga cctacaagag gaccaggcac tcggaagtct cgcccccact
7621 gaggcagtgg gcagggcaga cggctttggc caagatgact tagatttcta gacaagatca
7681 agctagaaaa caatcacgag cttgggagct ctgtttttaa tcatattttt tctacaaaac
7741 tgagcaacgt tcagtccact ggagatgttc atagtacatg gacaaagacc aaggacttgc
7801 caaggacaca gcccatgcca tgctgtcctg ggactcttaa gtccagaagt gtcagagagc
7861 tctgcggccc gtcccacacg cagtgtgaag aaagggggtg tctgcggatc tgcccggtta
7921 tcggaggtca gcccggctcc tatttatttg tctgcagagc ccgaaagatg gaactgattg
7981 gaaaggctcc agtttagctt ttgtttgtgg gtttgttttc tgctagcaag tgttgctctc
8041 tgtcttttcc ctgttgatct cctgttactt ttctccttgg cttctgttgg cactcacctc
8101 atttgacttt gaggtgcttt ttttctagtc tggaatatat ttgatgactc tgcagaaata
8161 cttgggcaaa gcaggtaact tcagagtcat tgga
//