LOCUS AJ459827 2800 bp mRNA linear HUM 07-OCT-2008
DEFINITION Homo sapiens mRNA for HBS1-like protein (HSB1 gene), splice variant
2.
ACCESSION AJ459827
VERSION AJ459827.1
KEYWORDS alternative splicing; HBS1 gene; HBS1-like protein.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2800)
AUTHORS Close J.P.
JOURNAL Submitted (07-MAY-2002) to the INSDC. Close J.P., Department of
Molecular Haematology, King's College London, GKT School of
Medicine, King's Denmark Hill Campus, Bessemer Road, London, SE5
9PJ, UNITED KINGDOM.
REFERENCE 2
AUTHORS Close J.P., Game L.G., Clark B., Thein S.L.
TITLE An integrated physical and transcript map of human 6q23
encompassing a quantitative trait loci for foetal haemaglobin
expression.
JOURNAL Thesis (2002), Department of Clinical Medicine, University of
Oxford, Oxford, United Kingdom.
COMMENT alternative splice variant sequences: AJ459826
FEATURES Location/Qualifiers
source 1..2800
/db_xref="H-InvDB:HIT000248087"
/organism="Homo sapiens"
/chromosome="6"
/map="6q23"
/mol_type="mRNA"
/db_xref="taxon:9606"
CDS 194..2092
/gene="HBS1"
/product="HBS1-like protein"
/note="alternative splice variant 2"
/db_xref="GOA:Q9Y450"
/db_xref="H-InvDB:HIT000248087.15"
/db_xref="HGNC:HGNC:4834"
/db_xref="InterPro:IPR000795"
/db_xref="InterPro:IPR004160"
/db_xref="InterPro:IPR004161"
/db_xref="InterPro:IPR009000"
/db_xref="InterPro:IPR009001"
/db_xref="InterPro:IPR015033"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR037189"
/db_xref="PDB:5LZW"
/db_xref="PDB:5LZX"
/db_xref="PDB:5LZY"
/db_xref="PDB:5LZZ"
/db_xref="UniProtKB/Swiss-Prot:Q9Y450"
/protein_id="CAD30874.1"
/translation="MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSR
RDKPSVEPVEEYDYEDLKESSNSVSNHQLSGFDQARLYSCLDHMREVLGDAVPDEILI
EAVLKNKFDVQKALSGVLEQDRVQSLKDKNEATVSTGKIAKGVLFSSSEVSADNVQSS
YPQSANHLDYSSKPFDFASSVGKYGLSHNSSVPTHCLLHRKKKLDTRKSEKKLESCKL
TKELSLANLIHDMSRDSCESQPSVRLSSTDSLESLLSKNLDADLLRPHASECISKDDS
AFKEIPDLKTIIIKGTTPNNSLYIQNNSLSDFQNIPVQDSLGSSNNPLYLTSSLENMT
VDNLNASKETEVGNVSLVEQSAKNHTFKNDNLQFSQCESPSLTELFQEHKENNISQCF
TLSDLCNQSSASFTDLSLGSFPLSQLANRCQSSPGISELTGSLSSLAFHKASPTRDLE
NLSLSELIAETIDVDNSQIKKESFEVSLSEVRSPGIDSNIDLSVLIKNPDFVPKPVVD
PSIAPSSRTKVLSSKLGKNSNFAKDNKKNNKGSLTRKPPFSLSWTKALAARPSAFAST
LCLRYPLKSCKRRTLDLYKTFLYSRQVQDVKDKEISPLVAITPFDFKSASPDDIVKAN
QKKAFTRE"
regulatory 2767..2772
/gene="HSB1"
/regulatory_class="polyA_signal_sequence"
BASE COUNT 895 a 491 c 521 g 893 t
ORIGIN
1 tgaccctgag gcattgccgt cgcgcggtgc acagctaaga cgtcgcgctt gcgcaggcgc
61 tcggcgcaga ggcctgcggg aagccaagat ggcgcatagg ggttctccag gctgcagttg
121 gcgccttatc agtatctaag cggagtgttt tggaaggagt taaggggctg tggcaaacgc
181 cctctccgcc gtcatggccc ggcatcggaa tgttcgaggc tataactacg atgaagattt
241 tgaagatgat gatctctacg gccagtctgt agaggatgat tattgtattt cgccgtcaac
301 agctgctcag tttatttatt cacggcgtga caaaccttcc gttgagcctg tggaagaata
361 tgattatgaa gatctgaaag aatcttccaa ttctgtttca aaccatcagc tcagtggatt
421 tgatcaagct cgtctttatt catgccttga tcacatgaga gaggtacttg gagatgctgt
481 gccagatgaa atattaattg aagcagttct gaagaacaag tttgatgtgc agaaggcttt
541 gtcaggggtt ctggaacaag atagagtgca gagtttgaag gacaagaatg aggcaacagt
601 atctacagga aagatagcaa aaggagtctt attttcttct tctgaagttt cagctgataa
661 tgttcaaagt tcttatcctc agtcagcaaa tcatttggat tatagtagca aaccctttga
721 ttttgctagc tcagtaggaa aatacggatt atctcataat tcttcagttc caactcactg
781 tttactccat agaaaaaaga aacttgacac acgtaaaagt gaaaagaaac tagaatcatg
841 taagttaaca aaagaacttt cactagctaa cctaattcat gatatgtcaa gagattcctg
901 tgaaagtcag ccatcagtca gattatcatc tacagacagt ctggaaagtc tgctttcaaa
961 gaacctagat gccgatttgt tgagacctca tgcatctgaa tgcatttcca aagatgattc
1021 tgcattcaaa gaaataccag atttaaagac cataatcata aagggcacaa caccgaataa
1081 ttctttatat attcaaaata attcactgtc tgattttcaa aacattccag tacaggacag
1141 tttaggaagt tcaaataatc ctttgtactt aactagctcg ttggaaaata tgactgttga
1201 taatttaaat gctagtaaag aaactgaagt tggaaatgtt tctttagttg aacaaagtgc
1261 caagaatcac acttttaaaa atgataattt gcagttttct cagtgtgaaa gtccatccct
1321 aactgaactg tttcaggaac acaaagaaaa caatataagc cagtgcttta ctttatctga
1381 cctttgtaac cagtcatctg ccagtttcac agatctaagt ttgggatcct ttcccctgtc
1441 acaattagca aatcgctgtc agtcttcacc cggaatatca gaattaacag gatctctgtc
1501 gtcattggca tttcataaag cttctcccac aagagacctt gagaatttgt cactttctga
1561 attgattgca gaaacaattg atgtagacaa ctctcagatt aagaaagagt cctttgaggt
1621 cagtttatct gaagtgaggt ctcctggaat agattcaaat attgatctta gtgtccttat
1681 aaaaaaccca gattttgttc caaagcctgt agtagaccca tccattgctc catcatcacg
1741 aactaaagtt ctaagttcaa agctagggaa gaattccaat tttgctaagg ataataagaa
1801 aaacaacaaa ggctctctga ctaggaaacc acctttttct ctctcttgga ccaaggccct
1861 tgctgctaga ccttcagctt ttgcctcaac actgtgtctt cgttacccac tgaaaagctg
1921 caagcgacgc acccttgacc tctataagac ttttctttat agtagacaag ttcaagatgt
1981 aaaggacaaa gaaataagtc cacttgtagc aataacacca tttgacttca aatcagcatc
2041 acctgatgac attgtaaaag ctaatcaaaa aaaagcattt actagagaat agtaacaaaa
2101 ggaaaacttg attgctgttg tagagctttt tatttttaat taaagtcttc agaggatcac
2161 tttatattat gggattcaaa ttctgatttt tatgaaaatt gtcgtaggtc agttgattag
2221 ttgatacgta tttttgcact gatttttttt ttaactatgt cttctttcag tgataactgg
2281 ctttatttaa gttggtaacc tatactgagt atatgtttac aaagtggata tggaaacttg
2341 atgttgtgaa atcagacctc atatattttt gtttgaagca ttcaactttc tatgtttttt
2401 ataatgaaat atttttttct atgaaatatt tttgtgcttt gttcttaaac gaaaatgcca
2461 gcacttggga ttattatagt ttagtgtgaa gattattctt atgtggcaca gcataactga
2521 gatgttatat tttaaaatat gatataattc ctagtttcat tatttttctg taaatactaa
2581 aatttttcta ttagaaaatc ttaaaattcc tgacttttga gagtactgtg gagattgttg
2641 aaatacattt ttgataataa taaaatgaaa atcttttaag ggaccatgta aatatagaag
2701 ttggattaat atgtgaatta tttttataca tttttaaaaa ccatttgtcc taagtataca
2761 ctttaaaata aatatataaa aagtgttttc aagaaaaaaa
//