LOCUS AJ404698 1408 bp DNA linear PLN 15-APR-2005
DEFINITION Cyperus pygmaeus chloroplast partial rbcL gene for
ribulose-bisphosphate carboxylase large subunit.
ACCESSION AJ404698
VERSION AJ404698.1
KEYWORDS rbcL gene; ribulose-bisphosphate carboxylase large subunit.
SOURCE chloroplast Cyperus pygmaeus
ORGANISM Cyperus pygmaeus
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Cyperaceae;
Cyperoideae; Cypereae; Cyperus; C4 Cyperus; Cyperus; C4 Cyperus
incertae sedis.
REFERENCE 1 (bases 1 to 1408)
AUTHORS Simpson D.A.
JOURNAL Submitted (26-JUN-2000) to the INSDC. Simpson D.A., Herbarium,
Royal Botanic Gardens Kew, Royal Botanic Gardens, Kew, Richmond,
Surrey, TW9 3AB, UNITED KINGDOM.
REFERENCE 2
AUTHORS Muasya A.M., Simpson D.A., Chase M.W.
TITLE A phylogeny of Isolepis (Cyperaceae) inferred using plastid rbcL
and trnL-F sequence data
JOURNAL Unpublished.
FEATURES Location/Qualifiers
source 1..1408
/organism="Cyperus pygmaeus"
/organelle="plastid:chloroplast"
/mol_type="genomic DNA"
/country="Kenya"
/specimen_voucher="Muasya 1133 (K)"
/dev_stage="adult"
/tissue_type="leaf"
/db_xref="taxon:130938"
CDS <1..>1408
/codon_start=2
/transl_table=11
/gene="rbcL"
/product="ribulose-bisphosphate carboxylase large subunit"
/db_xref="GOA:Q9MRM4"
/db_xref="InterPro:IPR000685"
/db_xref="InterPro:IPR017443"
/db_xref="InterPro:IPR020878"
/db_xref="InterPro:IPR020888"
/db_xref="InterPro:IPR033966"
/db_xref="InterPro:IPR036376"
/db_xref="InterPro:IPR036422"
/db_xref="UniProtKB/TrEMBL:Q9MRM4"
/protein_id="CAC01094.1"
/translation="KANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPE
EAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEENQYIAYIAYPLDLFE
EGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQAERDKLNKYGR
PLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAI
YKAQAETGEIKGHYLNATAGTSEEMIKRAVFAKELGVPIIMHDYITGGFTANTSLSFY
CRDNGLLLHIHRAMHAVIDRQKNHGIHFRVLAKALRMSGGDHIHSGTVVGKLEGEREM
TLGFGDLLRDDYIEKDRSRGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSV
LQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIRAADKWSPELAA
ACEVWKAIKFDFDPVDKLD"
BASE COUNT 408 a 259 c 323 g 418 t
ORIGIN
1 taaagctaat gttgggttta aagcaggtgt taaagattac aaacttactt attatactcc
61 tgagtacgaa accaaagata ctgatatctt ggcagcgttc cgagtaactc ctcaacctgg
121 agtccctcct gaagaagcag gagctgcagt agcggcggaa tcttctactg gtacatggac
181 aactgtttgg actgatggac ttaccagtct tgatcgttac aaagggcgat gctatcatat
241 cgaacctgtt gctggagaag aaaatcaata tattgcctat atagcttatc ctttagacct
301 tttcgaagaa ggttctgtta ctaacatgtt tacttctatt gtaggtaatg tatttggttt
361 caaagcctta cgagctctac gcttggaaga cttacgaatt cctcctgctt attcaaaaac
421 tttccaaggt ccacctcacg gtatccaagc tgaaagagat aagttgaaca agtatggtcg
481 tcctctattg ggatgtacta ttaaaccaaa attgggatta tccgcaaaga attacggtag
541 agcatgttat gaatgtctac gtggtggact tgattttacc aaagatgatg aaaacgtaaa
601 ctcacaacca tttatgcgtt ggagagatcg tttcttgttc tgtgccgaag caatttataa
661 agcacaagcc gaaacaggtg aaatcaaagg gcactacttg aatgctactg caggtacatc
721 tgaagaaatg atcaaaagag cagtatttgc taaagaatta ggagttccta tcatcatgca
781 tgactacata actgggggat tcactgcaaa tactagtttg tctttttatt gccgtgataa
841 tggtctactt ctgcacatcc accgcgcaat gcatgcagtt attgatagac agaaaaacca
901 tggtattcat ttccgtgtac tagctaaagc attacgtatg tctggtggag atcatattca
961 ctctggtaca gtagtaggta aactggaagg tgagcgtgag atgactttag gttttggtga
1021 tttactacgt gatgattata ttgaaaaaga tcgtagccgt ggtatctttt tcactcaaga
1081 ttgggtctct atgcctggtg ttatacctgt ggcttcaggg ggtatccatg tttggcatat
1141 gcctgctttg accgaaatct ttggagatga ttccgtactt caatttggtg gcggaacctt
1201 aggacaccct tggggaaatg cacctggtgc agtagctaac agggtggctt tagaagcgtg
1261 cgtacaagct cgtaatgaag gacgtgatct tgctcgtgaa ggtaatgaaa ttattcgcgc
1321 agcagataaa tggagtccag aattagccgc tgcttgtgaa gtatggaaag caatcaaatt
1381 tgacttcgat ccggtagata aattagat
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