LOCUS AJ311122 2726 bp mRNA linear HUM 07-OCT-2008
DEFINITION Homo sapiens mRNA for scapinin 1B (SCAPIN1 gene).
ACCESSION AJ311122
VERSION AJ311122.2
KEYWORDS alternative splicing; SCAPIN1 gene; scapinin 1B.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1
AUTHORS Schlote D.
JOURNAL Submitted (02-MAY-2001) to the INSDC. Schlote D., Institut fuer
Humangenetik und Medizinische Biologie, University of Halle /
Wittenberg, Magdeburgerstr. 2, 06097 Halle / Saale, GERMANY.
REMARK revised by [3]
REFERENCE 2
AUTHORS Worch S., Kussmann S., Hansmann I., Schlote D.
TITLE Mapping and characterization of a novel cDNA homologue to protein
fragment Q9H4T4
JOURNAL Unpublished.
REFERENCE 3 (bases 1 to 2726)
AUTHORS Worch S.
JOURNAL Submitted (18-AUG-2004) to the INSDC. Schlote D., Institut fuer
Humangenetik und Medizinische Biologie, University of Halle /
Wittenberg, Magdeburgerstr. 2, 06097 Halle / Saale, GERMANY.
COMMENT Related entries: AK098788.1, AJ617581.1, AB098521.1, AB098522.1.
FEATURES Location/Qualifiers
source 1..2726
/db_xref="H-InvDB:HIT000247090"
/organism="Homo sapiens"
/chromosome="10"
/map="20q13"
/mol_type="mRNA"
/db_xref="taxon:9606"
mRNA 1..2726
/gene="SCAPIN1"
/note="alternative splicing of exon 1"
5'UTR 1..590
/gene="SCAPIN1"
CDS 591..2147
/gene="SCAPIN1"
/product="scapinin 1B"
/note="alternative splicing of exon 1"
/db_xref="GOA:Q96KR7"
/db_xref="H-InvDB:HIT000247090.15"
/db_xref="HGNC:HGNC:15833"
/db_xref="InterPro:IPR004018"
/db_xref="InterPro:IPR029990"
/db_xref="UniProtKB/Swiss-Prot:Q96KR7"
/experiment="experimental evidence, no additional details
recorded"
/protein_id="CAC67489.2"
/translation="MDQTPPARPEYLVSGIRTPPVRRNSKLATLGRIFKPWKWRKKKN
EKLKQTTSALEKKMAGRQGREELIKKGLLEMMEQDAESKTCNPDGGPRSVQSEPPTPK
SETLTSEDAQPGSPLATGTDQVSLDKPLSSAAHLDDAAKMPSASSGEEADAGSLLPTT
NELSQALAGADSLDSPPRPLERSVGQLPSPPLLPTPPPKASSKTTKNVTGQATLFQAS
SMKSADPSLRGQLSTPTGSPHLTTVHRPLPPSRVIEELHRALATKHRQDSFQGRESKG
SPKKRLDVRLSRTSSVERGKEREEAWSFDGALENKRTAAKESEENKENLIINSELKDD
LLLYQDEEALNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEI
RQQIEMKLSKRLSQRPAVEELERRNILKQRNDQTEQEERREIKQRLTRKLNQRPTVDE
LRDRKILIRFSDYVEVAKAQDYDRRADKPWTRLSAADKAAIRKELNEYKSNEMEVHAS
SKHLTRFHRP"
3'UTR 2148..2726
/gene="SCAPIN1"
regulatory 2699..2704
/gene="SCAPIN1"
/note="alternative signal ATTAAA"
/regulatory_class="polyA_signal_sequence"
BASE COUNT 751 a 713 c 688 g 574 t
ORIGIN
1 gcaattgcaa gagcaaagat tcttcctttt cccttttttc ctgggggggt ggggggtggg
61 gtggggggag ggagcgcccc cagacattcc aggacatcac cccctgcccc aagcacgcaa
121 taaacactga caagaaaaag tttttatttc ctggttcaac tttttttttt ttccctggaa
181 tatagactga agaatgggaa taaacacgaa taaataacaa agcgaggccg cgcacgccgg
241 gatgcgcctg gctgcagccg gcgaggctat tgtctccccg ccctgaagcc agccccggcg
301 tctttctcca gctcgtttcc tttcccggcc tttttttttt tttttttttt ttaattttct
361 tttttaaaaa gacgccccct ccagccccct cgccggtgac cttggccgcc tcggatgctc
421 tgattccacg cggctcgctc taacttgccc ccgcgccggc cgggcccatg gccgcgtcgg
481 aggacgggag cggctgcctc gtgtcgcggg gccgctcgca gagtgacccc agcgtcctca
541 ccgactcctc ggccacctcc tccgcggacg ccggggagaa cccagatgag atggaccaaa
601 cgcccccggc gcgtcctgaa tatctggtct cagggattcg aactccccct gtgaggagga
661 acagcaaact ggccaccctg ggcaggatct tcaaaccctg gaaatggagg aaaaagaaaa
721 acgaaaaact gaagcagaca acgtcagcgc tggagaagaa gatggccggc aggcaaggcc
781 gagaggagct catcaagaag gggctgctgg agatgatgga gcaggatgct gaaagcaaaa
841 cttgcaaccc cgatggagga ccccgatctg tacagagtga accacccact cccaagtcgg
901 agacgctgac ttcagaagat gcccagcccg gaagcccctt ggccactggg acggaccagg
961 tctccctgga caagccactg tcctcagctg cccacttgga cgatgcagcc aagatgcctt
1021 ctgcatccag tggtgaagaa gcagacgctg gcagcctcct gcccaccacc aatgagctct
1081 cccaagcctt agctggggct gactccctgg acagtcctcc cagacctctg gagagatccg
1141 tgggccagct ccccagcccc ccactgctgc ccactccgcc acccaaggca agctccaaaa
1201 ccacaaaaaa tgtcacaggc caagccacac tcttccaagc ctccagcatg aagagtgccg
1261 acccttccct ccggggccag ctctccacac ccacggggtc tccgcatctc accacggtcc
1321 accggcctct tcccccaagc cgcgtcattg aggagctgca cagggcgctg gccacgaagc
1381 accgccagga cagttttcaa ggaagagaaa gtaaagggtc tccaaagaag cggctggatg
1441 tccgtctgtc gagaacgtcc agcgtggagc ggggcaagga gagggaggag gcttggagct
1501 ttgacggggc attggagaac aagcgaactg ccgctaagga atctgaggag aacaaggaga
1561 acctgatcat aaattctgaa ctcaaagacg acttgctttt gtatcaggac gaggaggcgc
1621 tgaacgactc cattatttct ggaacactgc cacggaaatg caagaaggag ctcctggccg
1681 tgaagctaag gaaccggcca agcaaacagg aactagaaga ccggaacatt ttccccagaa
1741 ggactgatga agaaagacag gagatccggc agcagatcga gatgaagctt tccaaacggc
1801 tgagccaaag acctgccgtg gaagagctgg agagaagaaa tatcttgaaa caaaggaatg
1861 atcagacaga gcaggaagaa agaagagaaa tcaagcaaag attgacaaga aagcttaatc
1921 agagacccac tgttgatgaa ttaagagaca gaaaaattct gatacgattc agtgattacg
1981 tggaagtagc aaaagcgcag gactatgaca ggagggcaga caaaccctgg acgagactgt
2041 cagcagcaga taaggcagca attcgtaaag aattaaatga gtacaaaagt aatgaaatgg
2101 aggtacatgc atcaagcaag cacttgacaa gattccacag gccatagaga ttttcttctg
2161 agaagaattt gtgtttaatt ttttgatacc aacactgaac attcatcagg gaactttcct
2221 gaagttcagc tcaagactac cctacctgct gtgtttgtga gaagagtagg atcacacaca
2281 caggtgcaat cttgaccaca cttacctgca agaggagtaa ccagaggaca cacttccttc
2341 cttctttggt gtctgaggag tgtgaactgt tggggtcagt taagacccaa cataactcta
2401 tcagaagaaa actgttgttt gcctttcaac cttgttttac agttctgcag tgtaatggag
2461 gacgggcaac gtgcatgtgc aggctcacca ctcccaggcc tctgacatga gggacatgtg
2521 acagtgtcat tcagtattat gttcaaaaga catttttatc ctgatcataa ttaatttgaa
2581 aactctttaa gttcatgtta tacaagatga tttactgtat tatacttttc cttttttata
2641 taatgtctaa caaaaaatac agctgcaaca ttttgattcc tgttaatttt gttctttaat
2701 taaatgacta cttattgcag gaaatt
//