LOCUS AJ293624 2996 bp mRNA linear HUM 07-OCT-2008
DEFINITION Homo sapiens mRNA for type XIII collagen (COLXIIIA1 gene).
ACCESSION AJ293624
VERSION AJ293624.1
KEYWORDS COLXIIIA1 gene; type XIII collagen.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2996)
AUTHORS Snellman A.
JOURNAL Submitted (31-JUL-2000) to the INSDC. Snellman A., Department of
Medical Biochemistry, University of Oulu, po. Box 5000, 90014,
Oulu, FINLAND.
REFERENCE 2
AUTHORS Snellman A., Tu H., Vaeisaenen T., Kvist A.P., Huhtala P.,
Pihlajaniemi T.
TITLE A short sequence in the N-terminal region is required for the
trimerization of type XIII collagen and is conserved in other
collagenous transmembrane proteins
JOURNAL Unpublished.
FEATURES Location/Qualifiers
source 1..2996
/db_xref="H-InvDB:HIT000246641"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
CDS 498..2651
/gene="COLXIIIA1"
/product="type XIII collagen"
/db_xref="GOA:Q5TAT6"
/db_xref="H-InvDB:HIT000246641.14"
/db_xref="HGNC:HGNC:2190"
/db_xref="InterPro:IPR008160"
/db_xref="UniProtKB/Swiss-Prot:Q5TAT6"
/experiment="experimental evidence, no additional details
recorded"
/protein_id="CAC00688.1"
/translation="MVAERTHKAAATGARGPGELGAPGTVALVAARAERGARLPSPGS
CGLLTLALCSLALSLLAHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKL
HSRRRREAPKTSPGCNCPPGPPGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRG
PPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPH
RECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPG
PPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGA
PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGL
PAPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNI
NEALQEIRTLALMGPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDM
GPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEV
PGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRP
GPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKG
SRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK"
BASE COUNT 687 a 812 c 979 g 518 t
ORIGIN
1 gtgtcaagtt acagaggcgc gggaatcggc ccctgcgctc ctcgccagcc gccacgaccc
61 acctctgccc atgggccctg catgtgcgcc ccttcgcccg gggactgaaa ctgactggcc
121 cgggagacac cccgaggcgc ccagaaggac tgacagcgcg gcaccaactg ctctgcagac
181 acttgaaggg aaagactggg cggagagaag gagagccggt cagattcccc taactttcct
241 ggacttggaa cgttcttcga aataactttt ttctccacct aggttgtacc ccaattaccg
301 ctggttgtgc tttttcggca cttcctctcc tactgctaat tttccgtcct ctttgccggg
361 agcagcggaa agggacgttt tccagcgata caagcccttt ccccccctgc cccgcagttt
421 ggatagagcc ttttggcagc ggctgtcgcc tttatttatt ctatttattt atttattggt
481 tctcaagacg cgagaggatg gtagcggagc gcacccacaa agcggcagcc accggtgccc
541 gcggccctgg ggagttgggc gcgcccggga cggtggctct ggtggcggcg cgggcggagc
601 gcggcgcacg gctgccgagt ccagggtcgt gcgggctgct gacgctggcc ctctgctcgc
661 tggcactcag cctgctcgcc cactttcgga cggccgagct gcaggcccgg gtgctgcgcc
721 tggaagcgga gcgcggggag cagcaaatgg agacagctat tttgggacga gtcaatcaac
781 tgctggacga gaaatggaag ctccactcaa ggaggcgccg ggaggcccca aagacatctc
841 caggatgtaa ctgcccacca ggacctcctg gtcccactgg aagacccgga ctcccagggg
901 acaaaggtgc cattgggatg cctggacgtg tggggtcccc cggagacgct gggctgtcca
961 tcattggtcc ccgcggcccc cctggtcaac caggcactag aggtttccct ggatttccgg
1021 gtcccattgg gctggacggc aaaccgggcc acccaggacc aaagggcgac atgggtctga
1081 cgggtccccc aggacagccg ggaccccagg gacaaaaagg agaaaagggt cagtgtggag
1141 agtacccaca ccgggagtgc ctaagcagca tgccagcagc tctgcgctcc agccagataa
1201 ttgccctgaa gctgctgcct ctcctcaatt cagtgcgact ggctccaccc ccggtcataa
1261 aaaggcggac attccagggc gaacagagcc aggccagcat ccaaggtcca ccagggcccc
1321 caggcccccc tggaccaagt ggacctctgg ggcacccagg actgccaggg cctatggggc
1381 cacctggctt acctgggcct cctggaccaa agggagaccc agggatccag ggctaccacg
1441 gccggaaggg agaacggggc atgccaggga tgccaggcaa gcatggagcc aagggggcgc
1501 ccggaattgc cgtggctggg atgaagggtg agccagggat cccaggaacc aagggtgaga
1561 agggggctga aggctcccct gggcttcctg gcctcctggg gcagaaggga gagaaaggcg
1621 atgctggcaa ctccattgga ggaggcagag gggaacctgg ccctccaggg ctccctgcgc
1681 ccccagggcc aaagggagaa gcaggtgtcg atggccaggt tggcccccca gggcagccag
1741 gagacaaggg ggagcgtgga gcagctggag aacagggacc agatggcccc aagggctcca
1801 agggagaacc agggaaagga gagatggtgg attacaatgg aaacatcaat gaggctctcc
1861 aggagatccg gacgctggcc ttgatggggc ctcctggtct tcctgggcaa attggcccac
1921 ctggagctcc agggattcca ggccagaagg gggagattgg actgccaggc cctccaggac
1981 acgatgggga aaagggacct cgcggtaaac caggagacat gggccctcct ggtccccaag
2041 gccccccagg aaaggatgga cctccaggag tgaagggaga aaacgggcac ccagggagcc
2101 caggagagaa gggggaaaaa ggggagacag gacaagcagg ctcaccggga gagaaaggag
2161 aagccgggga gaagggcaat ccaggagcag aggttcctgg gctgccaggg ccagaggggc
2221 ctcccggacc tccggggctc caaggtgttc ctggaccaaa gggggaagca ggactagatg
2281 gagcaaaagg agagaaaggc ttccagggag aaaaaggaga ccgtggtccc ctgggactac
2341 ccggagcttc aggtttggac ggcaggcctg ggccaccggg tactccagga ccaattggag
2401 ttccaggccc agcgggacca aagggcgaga ggggcagcaa aggagaccct gggatgacag
2461 gaccaacggg agcagctggg cttcctggtt tacatggacc acccggggac aagggaaacc
2521 ggggggagag ggggaagaaa ggctctagag ggcctaaagg ggacaaggga gaccaaggag
2581 cgcctggatt agatgccccc tgcccattgg gcgaagatgg cttaccagtc caaggctgct
2641 ggaacaagtg atgcctctaa ccttggattg gcctgtgtgt gtgtttgtac atagaatatt
2701 tatttttata cagttttcac tttttgaaaa tgccagaagt atgatgcatc ttacagatta
2761 ttaaaaaaga aagaaaaacc gttgcatatt ttgtacagaa aatatcaacc tcttcccttt
2821 tgtttacaag atgttttgta taagcctatg tctctaatac attttttgtt tggtcgtaat
2881 gtctgcatga tatttgtgca catttattaa gtatcgaagg ttaataaatt gttgtgtcct
2941 ggtgccaagg ggggccagcc agaactgagg tgctggctag ctcatgtgtg aattcg
//