LOCUS AJ276804 4723 bp mRNA linear HUM 07-OCT-2008 DEFINITION Homo sapiens mRNA for protocadherin (PCDHX gene). ACCESSION AJ276804 VERSION AJ276804.1 KEYWORDS PCDHX gene; protocadherin. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4723) AUTHORS Blanco P. JOURNAL Submitted (23-MAR-2000) to the INSDC. Blanco P., Department of Pathology, University of Cambridge, Tennis Court Rd, CB2 1QP, UNITED KINGDOM. REFERENCE 3 AUTHORS Blanco P., Sargent C.A., Boucher C., Mitchell M., Affara N. TITLE Conservation of PCDHX in mammals; expression of human X/Y genes predominantly in brain JOURNAL Mamm. Genome 11(10), 906-914(2000). PUBMED 11003707 FEATURES Location/Qualifiers source 1..4723 /db_xref="H-InvDB:HIT000246352" /organism="Homo sapiens" /chromosome="X" /map="Xq21.3" /mol_type="mRNA" /dev_stage="fetal" /tissue_type="brain" /db_xref="taxon:9606" 5'UTR 1..589 /gene="PCDHX" CDS 590..3667 /codon_start=1 /gene="PCDHX" /product="protocadherin" /function="cell adhesion molecule" /db_xref="GOA:Q9BZA7" /db_xref="H-InvDB:HIT000246352.12" /db_xref="HGNC:HGNC:8656" /db_xref="InterPro:IPR002126" /db_xref="InterPro:IPR013164" /db_xref="InterPro:IPR013585" /db_xref="InterPro:IPR015919" /db_xref="InterPro:IPR020894" /db_xref="UniProtKB/Swiss-Prot:Q9BZA7" /protein_id="CAC13123.1" /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRTSTIEICSEI" 3'UTR 3668..4723 /gene="PCDHX" BASE COUNT 1418 a 1051 c 1034 g 1220 t ORIGIN 1 cccctttctc cccctcggtt aagtccctcc ccctcgccat tcaaaagggc tggctcggca 61 ctggctcctt gcagtcggcg aactgtcggg gcgggaggag ccgtgagcag tagctgcact 121 cagctgcccg cgcggcaaag aggaaggcaa gccaaacaga gtgcgcagag tggcagtgcc 181 agcggcgaca caggcagcac aggcagcccg ggctgcctga atagcctcag aaacaacctc 241 agcgactccg gctgctctgc ggactgcgag ctgtggcggt agagcccgct acagcagtcg 301 cagtctccgt ggagcgggcg gaagcctttt ttctcccttt cgtttacctc ttcattctac 361 tctaaaggca tcgttattag gaaaatcctg ttgcgaataa gaaggattcc acagatcaca 421 taccggagag gttttgcctc agctgctctc aactttgtaa tcttgtgaag aagctgacaa 481 gcttggctga ttgcagagca ctatgaggac tgaacgacag tgggttttaa ttcagatatt 541 tcaagtgttg tgcgggttaa tacaacaaac tgtaacaagt gtacctggta tggacttgtt 601 gtccgggacg tacattttcg cggtcctgct agcatgcgtg gtgttccact ctggcgccca 661 ggagaaaaac tacaccatcc gagaagaaat gccagaaaac gtcctgatag gcgacttgtt 721 gaaagacctt aacttgtcgc tgattccaaa caagtccttg acaactgcta tgcagttcaa 781 gctagtgtac aagaccggag atgtgccact gattcgaatt gaagaggata ctggtgagat 841 cttcactact ggcgctcgca ttgatcgtga gaaattatgt gctggtatcc caagggatga 901 gcattgcttt tatgaagtgg aggttgccat tttgccggat gaaatattta gactggttaa 961 gatacgtttt ctgatagaag atataaatga taatgcacca ttgttcccag caacagttat 1021 caacatatca attccagaga actcggctat aaactctaaa tatactctcc cagcggctgt 1081 tgatcctgac gtaggaataa acggagttca aaactacgaa ctaattaaga gtcaaaacat 1141 ttttggcctc gatgtcattg aaacaccaga aggagacaag atgccacaac tgattgttca 1201 aaaggagtta gatagggaag agaaggatac ctacgtgatg aaagtaaagg ttgaagatgg 1261 tggctttcct caaagatcca gtactgctat tttgcaagtg agtgttactg atacaaatga 1321 caaccaccca gtctttaagg agacagagat tgaagtcagt ataccagaaa atgctcctgt 1381 aggcacttca gtgacacagc tccatgccac agatgctgac ataggtgaaa atgccaagat 1441 ccacttctct ttcagcaatc tagtctccaa cattgccagg agattatttc acctcaatgc 1501 caccactgga cttatcacaa tcaaagaacc actggatagg gaagaaacac caaaccacaa 1561 gttactggtt ttggcaagtg atggtggatt gatgccagca agagcaatgg tgctggtaaa 1621 tgttacagat gtcaatgata atgtcccatc cattgacata agatacatcg tcaatcctgt 1681 caatgacaca gttgttcttt cagaaaatat tccactcaac accaaaattg ctctcataac 1741 tgtgacggat aaggatgcgg accataatgg cagggtgaca tgcttcacag atcatgaaat 1801 ccctttcaga ttaaggccag tattcagtaa tcagttcctc ctggagactg cagcatatct 1861 tgactatgag tccacaaaag aatatgccat taaattactg gctgcagatg ctggcaaacc 1921 tcctttgaat cagtcagcaa tgctcttcat caaagtgaaa gatgaaaatg acaatgctcc 1981 agttttcacc cagtctttcg taactgtttc tattcctgag aataactctc ctggcatcca 2041 gttgacgaaa gtaagtgcaa tggatgcaga cagtgggcct aatgctaaga tcaattacct 2101 gctaggccct gatgctccac ctgaattcag cctggattgt cgtacaggca tgctgactgt 2161 agtgaagaaa ctagatagag aaaaagagga taaatattta ttcacaattc tggcaaaaga 2221 taacggggta ccacccttaa ccagcaatgt cacagtcttt gtaagcatta ttgatcagaa 2281 tgacaatagc ccagttttca ctcacaatga atacaacttc tatgtcccag aaaaccttcc 2341 aaggcatggt acagtaggac taatcactgt aactgatcct gattatggag acaattctgc 2401 agttacgctc tccattttag atgagaatga tgacttcacc attgattcac aaactggtgt 2461 catccgacca aatatttcat ttgatagaga aaaacaagaa tcttacactt tctatgtaaa 2521 ggctgaggat ggtggtagag tatcacgttc ttcaagtgcc aaagtaacca taaatgtggt 2581 tgatgtcaat gacaacaaac cagttttcat tgtccctcct tccaactgtt cttatgaatt 2641 ggttctaccg tccactaatc caggcacagt ggtctttcag gtaattgctg ttgacaatga 2701 cactggcatg aatgcagagg ttcgttacag cattgtagga ggaaacacaa gagatctgtt 2761 tgcaatcgac caagaaacag gcaacataac attgatggag aaatgtgatg ttacagacct 2821 tggtttacac agagtgttgg tcaaagctaa tgacttagga cagcctgatt ctctcttcag 2881 tgttgtaatt gtcaatctgt tcgtgaatga gtcggtgacc aatgctacac tgattaatga 2941 actggtgcgc aaaagcactg aagcaccagt gaccccaaat actgagatag ctgatgtatc 3001 ctcaccaact agtgactatg tcaagatcct ggttgcagct gttgctggca ccataactgt 3061 cgttgtagtt attttcatca ctgctgtagt aagatgtcgc caggcaccac accttaaggc 3121 tgctcagaaa aacaagcaga attctgaatg ggctacccca aacccagaaa acaggcagat 3181 gataatgatg aagaaaaaga aaaagaagaa gaagcattcc cctaagaact tgctgcttaa 3241 ttttgtcact attgaagaaa ctaaggcaga tgatgttgac agtgatggaa acagagtcac 3301 actagacctt cctattgatc tagaagagca aacaatggga aagtacaatt gggtaactac 3361 acctactact ttcaagcccg acagccctga tttggcccga cactacaaat ctgcctctcc 3421 acagcctgcc ttccaaattc agcctgaaac tcccctgaat tcgaagcacc acatcatcca 3481 agaactgcct ctcgataaca cctttgtggc ctgtgactct atctccaagt gttcctcaag 3541 cagttcagat ccctacagcg tttctgactg tggctatcca gtgacgacct tcgaggtacc 3601 tgtgtccgta cacaccagac cgactgattc caggacatca actattgaaa tctgcagtga 3661 gatataactt tctaggaaca acaaaattcc attccccttc caaaaaattt caatgattgt 3721 gatttcaaaa ttaggctaag atcattaatt ttgtaatcta gatttcccat tataaaagca 3781 agcaaaaatc atcttaaaaa tgatgtccta gtgaaccttg tgctttcttt agctgtaatc 3841 tggcaatgga aatttaaaat ttatggaaga gacagtgcag cacaataaca gagtactctc 3901 atgctgtttc tctgtttgct ctgaatcaac agccatgatg taatataagg ctgtcttggt 3961 gtatacactt atggttaata tatcagtcat gaaacatgca attacttgcc ctgtctgatt 4021 gttgaataat taaaacatta tctccaggag tttggaagtg agctgaacta gccaaactac 4081 tctctgaaag gtatccaggg caagagacat ttttaagacc ccaaacaaac aaaaaacaaa 4141 accaaaacac tctggttcag tgttttgaaa atattcacta acataatatt gctgagaaaa 4201 tcatttttat tacccaccac tctgcttaaa agttgagtgg gccgggcgcg gtggctcacg 4261 cctgtaatcc cagcactttg ggaggccgag gcgggtggat cacgaggtca ggagattgag 4321 accatcctgg ctaacacggt gaaaccccat ctccactaaa aatacaaaaa attagcctgg 4381 cgtggtggcg ggcgcctgta gtcccagcta ctcgggaggc tgaggcagga gaatagcgtg 4441 aacccgggag gcggagcttg cagtgagccg agatggcgcc actgcactcc agcctgggtg 4501 acagagcaag actctgtctc aaaaagaaaa aaatgttcaa tgatagaaaa taattttact 4561 aggtttttat gttgattgta ctcatgctgt tccactcctt ttaattatta aaaagttatt 4621 tttggctggg tgtggtggct cacacctgta atcccagcac tttgggaggc cgaggtgggt 4681 ggatcacctg aggtcaggag ttcaagacca gtctggccaa cat //