LOCUS       AJ276804                4723 bp    mRNA    linear   HUM 07-OCT-2008
DEFINITION  Homo sapiens mRNA for protocadherin (PCDHX gene).
ACCESSION   AJ276804
VERSION     AJ276804.1
KEYWORDS    PCDHX gene; protocadherin.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4723)
  AUTHORS   Blanco P.
  JOURNAL   Submitted (23-MAR-2000) to the INSDC. Blanco P., Department of
            Pathology, University of Cambridge, Tennis Court Rd, CB2 1QP,
            UNITED KINGDOM.
REFERENCE   3
  AUTHORS   Blanco P., Sargent C.A., Boucher C., Mitchell M., Affara N.
  TITLE     Conservation of PCDHX in mammals; expression of human X/Y genes
            predominantly in brain
  JOURNAL   Mamm. Genome 11(10), 906-914(2000).
   PUBMED   11003707
FEATURES             Location/Qualifiers
     source          1..4723
                     /db_xref="H-InvDB:HIT000246352"
                     /organism="Homo sapiens"
                     /chromosome="X"
                     /map="Xq21.3"
                     /mol_type="mRNA"
                     /dev_stage="fetal"
                     /tissue_type="brain"
                     /db_xref="taxon:9606"
     5'UTR           1..589
                     /gene="PCDHX"
     CDS             590..3667
                     /codon_start=1
                     /gene="PCDHX"
                     /product="protocadherin"
                     /function="cell adhesion molecule"
                     /db_xref="GOA:Q9BZA7"
                     /db_xref="H-InvDB:HIT000246352.12"
                     /db_xref="HGNC:HGNC:8656"
                     /db_xref="InterPro:IPR002126"
                     /db_xref="InterPro:IPR013164"
                     /db_xref="InterPro:IPR013585"
                     /db_xref="InterPro:IPR015919"
                     /db_xref="InterPro:IPR020894"
                     /db_xref="UniProtKB/Swiss-Prot:Q9BZA7"
                     /protein_id="CAC13123.1"
                     /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL
                     KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR
                     DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL
                     PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK
                     VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA
                     DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL
                     MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
                     NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA
                     MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD
                     APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN
                     SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV
                     IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY
                     ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD
                     VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT
                     EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT
                     PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ
                     TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF
                     VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPTDSRTSTIEICSEI"
     3'UTR           3668..4723
                     /gene="PCDHX"
BASE COUNT         1418 a         1051 c         1034 g         1220 t
ORIGIN      
        1 cccctttctc cccctcggtt aagtccctcc ccctcgccat tcaaaagggc tggctcggca
       61 ctggctcctt gcagtcggcg aactgtcggg gcgggaggag ccgtgagcag tagctgcact
      121 cagctgcccg cgcggcaaag aggaaggcaa gccaaacaga gtgcgcagag tggcagtgcc
      181 agcggcgaca caggcagcac aggcagcccg ggctgcctga atagcctcag aaacaacctc
      241 agcgactccg gctgctctgc ggactgcgag ctgtggcggt agagcccgct acagcagtcg
      301 cagtctccgt ggagcgggcg gaagcctttt ttctcccttt cgtttacctc ttcattctac
      361 tctaaaggca tcgttattag gaaaatcctg ttgcgaataa gaaggattcc acagatcaca
      421 taccggagag gttttgcctc agctgctctc aactttgtaa tcttgtgaag aagctgacaa
      481 gcttggctga ttgcagagca ctatgaggac tgaacgacag tgggttttaa ttcagatatt
      541 tcaagtgttg tgcgggttaa tacaacaaac tgtaacaagt gtacctggta tggacttgtt
      601 gtccgggacg tacattttcg cggtcctgct agcatgcgtg gtgttccact ctggcgccca
      661 ggagaaaaac tacaccatcc gagaagaaat gccagaaaac gtcctgatag gcgacttgtt
      721 gaaagacctt aacttgtcgc tgattccaaa caagtccttg acaactgcta tgcagttcaa
      781 gctagtgtac aagaccggag atgtgccact gattcgaatt gaagaggata ctggtgagat
      841 cttcactact ggcgctcgca ttgatcgtga gaaattatgt gctggtatcc caagggatga
      901 gcattgcttt tatgaagtgg aggttgccat tttgccggat gaaatattta gactggttaa
      961 gatacgtttt ctgatagaag atataaatga taatgcacca ttgttcccag caacagttat
     1021 caacatatca attccagaga actcggctat aaactctaaa tatactctcc cagcggctgt
     1081 tgatcctgac gtaggaataa acggagttca aaactacgaa ctaattaaga gtcaaaacat
     1141 ttttggcctc gatgtcattg aaacaccaga aggagacaag atgccacaac tgattgttca
     1201 aaaggagtta gatagggaag agaaggatac ctacgtgatg aaagtaaagg ttgaagatgg
     1261 tggctttcct caaagatcca gtactgctat tttgcaagtg agtgttactg atacaaatga
     1321 caaccaccca gtctttaagg agacagagat tgaagtcagt ataccagaaa atgctcctgt
     1381 aggcacttca gtgacacagc tccatgccac agatgctgac ataggtgaaa atgccaagat
     1441 ccacttctct ttcagcaatc tagtctccaa cattgccagg agattatttc acctcaatgc
     1501 caccactgga cttatcacaa tcaaagaacc actggatagg gaagaaacac caaaccacaa
     1561 gttactggtt ttggcaagtg atggtggatt gatgccagca agagcaatgg tgctggtaaa
     1621 tgttacagat gtcaatgata atgtcccatc cattgacata agatacatcg tcaatcctgt
     1681 caatgacaca gttgttcttt cagaaaatat tccactcaac accaaaattg ctctcataac
     1741 tgtgacggat aaggatgcgg accataatgg cagggtgaca tgcttcacag atcatgaaat
     1801 ccctttcaga ttaaggccag tattcagtaa tcagttcctc ctggagactg cagcatatct
     1861 tgactatgag tccacaaaag aatatgccat taaattactg gctgcagatg ctggcaaacc
     1921 tcctttgaat cagtcagcaa tgctcttcat caaagtgaaa gatgaaaatg acaatgctcc
     1981 agttttcacc cagtctttcg taactgtttc tattcctgag aataactctc ctggcatcca
     2041 gttgacgaaa gtaagtgcaa tggatgcaga cagtgggcct aatgctaaga tcaattacct
     2101 gctaggccct gatgctccac ctgaattcag cctggattgt cgtacaggca tgctgactgt
     2161 agtgaagaaa ctagatagag aaaaagagga taaatattta ttcacaattc tggcaaaaga
     2221 taacggggta ccacccttaa ccagcaatgt cacagtcttt gtaagcatta ttgatcagaa
     2281 tgacaatagc ccagttttca ctcacaatga atacaacttc tatgtcccag aaaaccttcc
     2341 aaggcatggt acagtaggac taatcactgt aactgatcct gattatggag acaattctgc
     2401 agttacgctc tccattttag atgagaatga tgacttcacc attgattcac aaactggtgt
     2461 catccgacca aatatttcat ttgatagaga aaaacaagaa tcttacactt tctatgtaaa
     2521 ggctgaggat ggtggtagag tatcacgttc ttcaagtgcc aaagtaacca taaatgtggt
     2581 tgatgtcaat gacaacaaac cagttttcat tgtccctcct tccaactgtt cttatgaatt
     2641 ggttctaccg tccactaatc caggcacagt ggtctttcag gtaattgctg ttgacaatga
     2701 cactggcatg aatgcagagg ttcgttacag cattgtagga ggaaacacaa gagatctgtt
     2761 tgcaatcgac caagaaacag gcaacataac attgatggag aaatgtgatg ttacagacct
     2821 tggtttacac agagtgttgg tcaaagctaa tgacttagga cagcctgatt ctctcttcag
     2881 tgttgtaatt gtcaatctgt tcgtgaatga gtcggtgacc aatgctacac tgattaatga
     2941 actggtgcgc aaaagcactg aagcaccagt gaccccaaat actgagatag ctgatgtatc
     3001 ctcaccaact agtgactatg tcaagatcct ggttgcagct gttgctggca ccataactgt
     3061 cgttgtagtt attttcatca ctgctgtagt aagatgtcgc caggcaccac accttaaggc
     3121 tgctcagaaa aacaagcaga attctgaatg ggctacccca aacccagaaa acaggcagat
     3181 gataatgatg aagaaaaaga aaaagaagaa gaagcattcc cctaagaact tgctgcttaa
     3241 ttttgtcact attgaagaaa ctaaggcaga tgatgttgac agtgatggaa acagagtcac
     3301 actagacctt cctattgatc tagaagagca aacaatggga aagtacaatt gggtaactac
     3361 acctactact ttcaagcccg acagccctga tttggcccga cactacaaat ctgcctctcc
     3421 acagcctgcc ttccaaattc agcctgaaac tcccctgaat tcgaagcacc acatcatcca
     3481 agaactgcct ctcgataaca cctttgtggc ctgtgactct atctccaagt gttcctcaag
     3541 cagttcagat ccctacagcg tttctgactg tggctatcca gtgacgacct tcgaggtacc
     3601 tgtgtccgta cacaccagac cgactgattc caggacatca actattgaaa tctgcagtga
     3661 gatataactt tctaggaaca acaaaattcc attccccttc caaaaaattt caatgattgt
     3721 gatttcaaaa ttaggctaag atcattaatt ttgtaatcta gatttcccat tataaaagca
     3781 agcaaaaatc atcttaaaaa tgatgtccta gtgaaccttg tgctttcttt agctgtaatc
     3841 tggcaatgga aatttaaaat ttatggaaga gacagtgcag cacaataaca gagtactctc
     3901 atgctgtttc tctgtttgct ctgaatcaac agccatgatg taatataagg ctgtcttggt
     3961 gtatacactt atggttaata tatcagtcat gaaacatgca attacttgcc ctgtctgatt
     4021 gttgaataat taaaacatta tctccaggag tttggaagtg agctgaacta gccaaactac
     4081 tctctgaaag gtatccaggg caagagacat ttttaagacc ccaaacaaac aaaaaacaaa
     4141 accaaaacac tctggttcag tgttttgaaa atattcacta acataatatt gctgagaaaa
     4201 tcatttttat tacccaccac tctgcttaaa agttgagtgg gccgggcgcg gtggctcacg
     4261 cctgtaatcc cagcactttg ggaggccgag gcgggtggat cacgaggtca ggagattgag
     4321 accatcctgg ctaacacggt gaaaccccat ctccactaaa aatacaaaaa attagcctgg
     4381 cgtggtggcg ggcgcctgta gtcccagcta ctcgggaggc tgaggcagga gaatagcgtg
     4441 aacccgggag gcggagcttg cagtgagccg agatggcgcc actgcactcc agcctgggtg
     4501 acagagcaag actctgtctc aaaaagaaaa aaatgttcaa tgatagaaaa taattttact
     4561 aggtttttat gttgattgta ctcatgctgt tccactcctt ttaattatta aaaagttatt
     4621 tttggctggg tgtggtggct cacacctgta atcccagcac tttgggaggc cgaggtgggt
     4681 ggatcacctg aggtcaggag ttcaagacca gtctggccaa cat
//