LOCUS       AJ247169                2498 bp    DNA     linear   PLN 02-NOV-2010
DEFINITION  Lindera benzoin chloroplast partial trnK intron including matK gene
            for maturase, specimen voucher Rohwer 170 (MJG).
ACCESSION   AJ247169
VERSION     AJ247169.2
KEYWORDS    matK gene; maturase.
SOURCE      chloroplast Lindera benzoin
  ORGANISM  Lindera benzoin
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Magnoliidae; Laurales; Lauraceae;
            Lindera.
REFERENCE   1
  AUTHORS   Rohwer J.G.
  TITLE     Toward a phylogenetic classification of the Lauraceae: evidence
            from matK sequences
  JOURNAL   Syst. Bot. 25(1), 60-71(2000).
REFERENCE   2
  AUTHORS   Rohwer J.G.
  JOURNAL   Submitted (26-JUN-1999) to the INSDC. Rohwer J.G., Institut fuer
            Spezielle Botanik, Johannes Gutenberg Universitaet, Mainz, 55099,
            GERMANY.
  REMARK    revised by [3]
REFERENCE   3  (bases 1 to 2498)
  AUTHORS   Rohwer J.G.
  JOURNAL   Submitted (03-MAR-2005) to the INSDC. Rohwer J.G., Institut fuer
            Spezielle Botanik, Johannes Gutenberg Universitaet, Mainz, 55099,
            GERMANY.
REFERENCE   4
  AUTHORS   Rohwer J.G., Rudolph B.
  TITLE     Jumping genera: the phylogenetic positions of Cassytha, Hypodaphnis
            and Neocinnamomum (Lauraceae) based on different analyses of trnK
            intron sequences
  JOURNAL   Ann. Mo. Bot. Gard. 92, 153-178(2005).
FEATURES             Location/Qualifiers
     source          1..2498
                     /organism="Lindera benzoin"
                     /organelle="plastid:chloroplast"
                     /mol_type="genomic DNA"
                     /country="Germany:Bot. Gard. Mainz"
                     /specimen_voucher="Rohwer 170 (MJG)"
                     /dev_stage="young"
                     /tissue_type="leaves"
                     /db_xref="taxon:55958"
     intron          1..>2498
                     /gene="trnK"
     CDS             717..2240
                     /codon_start=1
                     /transl_table=11
                     /gene="matK"
                     /product="maturase"
                     /db_xref="GOA:Q9GHV0"
                     /db_xref="InterPro:IPR002866"
                     /db_xref="InterPro:IPR024937"
                     /db_xref="InterPro:IPR024942"
                     /db_xref="UniProtKB/Swiss-Prot:Q9GHV0"
                     /protein_id="CAC05376.2"
                     /translation="MEELQGYLEMDGFRQQYFLYPFLFQEYIYALAHGHALNGSILYE
                     PVENLDHDNKSSSLIVKRLITRMHQQNRLIISVNDSNQNRFVGHNNHFDSQMISEGFA
                     VVVEIPFSLRLVSSLEEKEIAKSHNLRSIHSIFPFFEDKLSHLNHVSDILIPHPIHLE
                     ILVQTLHSWIQDTPSLHLLRFSLYEYWNSNSLITPKNSISLFSKENQRFFLFLSNSHV
                     YECEFIFIFLRKQPFHLRSKSFGSFLERTHFYAKIEYLVVVLCNDFQKTLWLFKDPFM
                     HYVRYQGKSILASRGARLLIKKWKSHLVNFWQCHFDLWSQPARIHIKQLYNHPFYFLG
                     YLSSVRLNSSVIRSQMLENSFRIDTAIKKFETVVPIIPLIGSLAKAKFCNVSGHPISK
                     PFRADLSDSEILNRFGRICRNLSHYHSGSSKKQSLYRIKYILRLSCARTLSRKHKSTI
                     RAFLKRLGSEFLEEFFTEEEQALSLIFPTTSSPSHRSHRERIWYLDIIRINDLVSHL"
BASE COUNT          756 a          446 c          456 g          840 t
ORIGIN      
        1 gtgcggctat ggtcttttac acattttgat gaagcaacgg attcgtccat accattggta
       61 gagtttgtaa gaccacgact gatcctgaaa gggaatgaaa ggaaaaaaca gcatgtcgta
      121 tcaatggaga actcttagaa tacttcatcc ttaacggatc gatacaaaat cttgttttga
      181 ttcttttctt ggaaaggggt caaatcaatt caagttgggt cgagtgaata aatggataga
      241 gccctatagc tccaattata gggaaaccaa aagcaacgag cttctgtttg ttcttaattc
      301 gaatgattac ccgatctaat tagacgttaa aaatatatta gtgcctggtg tgggaaaggg
      361 ttctcttgtg agtggatcat caattccttt ttttcatgaa tcctaactat tctctattat
      421 gttctctatt atgtagtgga gacgaatgtg tagaagaaac ggtatactga tcaaaattca
      481 ttattccaaa gtcaaaagag tgatcgggtt gtaaaaataa aggatttcta accatctctt
      541 gtaactataa cgaacataaa taaattggat ggaaatagga tccgttgatt gtcctttctg
      601 gctccggggt atctattctt ttcttactat ataccttgtt ctgaccgtat cgtactatgt
      661 attatttgat aactcaagaa atcccccatt tggttcaagt gtaatttcaa atggaaatgg
      721 aggaactaca aggatattta gaaatggatg gatttcggca acaatacttc ctatatccgt
      781 ttctatttca ggaatatatc tacgcgcttg ctcatggtca tgctttaaat ggatcgattc
      841 tttatgaacc ggtggaaaat ttagatcatg acaataaatc cagttcacta attgtgaaac
      901 gtttaattac tcgaatgcat caacagaatc gtttgattat ttcggttaat gattctaatc
      961 aaaatcgatt cgttgggcac aacaatcatt ttgattctca aatgatatcg gagggttttg
     1021 cagtcgttgt ggaaattcca ttctcgctgc gattggtatc ttccctagaa gaaaaagaaa
     1081 tagcaaaatc tcataattta cgatctattc attcaatatt tccctttttc gaggacaagt
     1141 tatcacattt aaatcatgtg tcagatatac taatacccca ccccatccat ctggaaatct
     1201 tggttcaaac ccttcactct tggatacaag atactccttc gttgcattta ttgcgattct
     1261 ctctctacga gtattggaat tcaaatagtc tcattactcc aaaaaattcc atttcccttt
     1321 tttcaaaaga gaatcaaaga ttcttcttgt tcctctctaa ttctcatgta tatgaatgtg
     1381 aattcatatt catttttctc cgtaaacaac cctttcattt acgatcaaaa tcttttggat
     1441 cctttcttga gcgaacacat ttctatgcaa aaatagaata tcttgtagta gtgctttgta
     1501 acgattttca gaaaacccta tggttgttca aagacccttt tatgcattat gtcagatatc
     1561 aaggaaaatc gattctggct tcaagggggg ctcgtcttct gataaagaaa tggaaatctc
     1621 accttgtcaa cttttggcaa tgtcattttg acttgtggtc tcaaccggcc aggatccata
     1681 taaagcaatt atataatcat cccttctatt ttctgggcta tctttcaagt gtacgactaa
     1741 actcttcggt gataaggagt caaatgctag agaattcgtt tcgaatagat actgctatta
     1801 agaaattcga gaccgtagtc ccaattattc ctctgattgg atcattggct aaagcaaaat
     1861 tttgtaatgt atcagggcat cccattagta agccgtttcg ggccgatttg tcagattctg
     1921 agattctcaa tcgatttggg cggatatgca gaaatctttc tcattatcac agtggatcct
     1981 caaaaaaaca gagtttgtat cgtataaagt atatacttcg actttcatgt gctagaactt
     2041 tgtctcgtaa acataaaagt acgatacgtg cttttttgaa aagattaggt tcggagttct
     2101 tggaagaatt ctttacggag gaagaacaag ctctttcttt gatcttccca acaacctctt
     2161 ctccttctca taggtcacat agagaacgga tttggtattt ggatattatc cgtatcaatg
     2221 acctagtcag tcatttatga ttggtcatga ggtcatgtaa atagaaagga tccctaaatg
     2281 atgaagagag aaaatcacaa aagaatttta ttcatttgaa ttctgaaatg ttcatacagt
     2341 agtggttgaa tcaactgagt cttcaagttt cttaggtccc cttttaggga acttagtttt
     2401 ggatgtatac ataggtaaag ccctgtgcaa tgaaaaatgc aagcacggct ttttgggggg
     2461 gtctttttac tctatatcta ttatattgca agaaggaa
//