LOCUS AJ132408 5067 bp mRNA linear HUM 07-OCT-2008
DEFINITION Homo sapiens mRNA for LIM domains containing protein 1.
ACCESSION AJ132408
VERSION AJ132408.1
KEYWORDS LIM domains containing gene 1; LIMD1 gene.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5067)
AUTHORS Kedra D.
JOURNAL Submitted (15-JAN-1999) to the INSDC. Kedra D., Dept. of Molecular
Medicine , Karolinska Hospital, Building L-8.00, Center of
Molecular Medicine (CMM), S-171 76, SWEDEN.
REFERENCE 2
AUTHORS Kiss H., Kedra D., Yang Y., Kost-Alimova M., Kiss C., O'Brien K.P.,
Fransson I., Klein G., Imreh S., Dumanski J.P.
TITLE A novel gene containing LIM domains (LIMD1) is located within the
common eliminated region 1 (C3CER1) in 3p21.3
JOURNAL Hum. Genet. 105(6), 552-559(1999).
PUBMED 10647888
FEATURES Location/Qualifiers
source 1..5067
/db_xref="H-InvDB:HIT000244694"
/organism="Homo sapiens"
/chromosome="3p21.3"
/mol_type="mRNA"
/db_xref="taxon:9606"
mRNA join(1..1429,1430..1531,1532..1599,1600..1662,1663..1793,
1794..1845,1846..1914,1915..5067)
exon 1..1429
/gene="LIMD1"
/number=1
/experiment="experimental evidence, no additional details
recorded"
CDS 22..2052
/gene="LIMD1"
/product="LIM domains containing protein 1"
/db_xref="GOA:Q9UGP4"
/db_xref="H-InvDB:HIT000244694.14"
/db_xref="HGNC:HGNC:6612"
/db_xref="InterPro:IPR001781"
/db_xref="InterPro:IPR028734"
/db_xref="UniProtKB/Swiss-Prot:Q9UGP4"
/protein_id="CAB63652.1"
/translation="MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEET
RRVFATKMAKIHLQQQQQQLLQEETLPRGSRGPVNGGGRLGPQARWEVVGSKLTVDGA
AKPPLAASTGAPGAVTTLAAGQPPYPPQEQRSRPYLHGTRHGSQDCGSRESLATSEMS
AFHQPGPCEDPSCLTHGDYYDNLSLASPKWGDKPGVSPSIGLSVGSGWPSSPGSDPPL
PKPCGDHPLNHRQLSLSSSRSSEGSLGGQNSGIGGRSSEKPTGLWSTASSQRVSPGLP
SPNLENGAPAVGPVQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQ
PWFQDGPKSYLSSSAPSSSPAGLDGSQQGAVPGLGPKPGCTDLGTGPKLSPTSLVHPV
MSTLPELSCKEGPLGWSSDGSLGSVLLDSPSSPRVRLPCQPLVPGPELRPSAAELKLE
ALTQRLEREMDAHPKADYFGACVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLR
GKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIMDMILQALGKSYHPGCFRCVIC
NECLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYH
VECYHCEDCGLELNDEDGHRCYPLEDHLFCHSCHVKRLEKRPSSTALHQHHF"
exon 1430..1531
/gene="LIMD1"
/number=2
/experiment="experimental evidence, no additional details
recorded"
exon 1532..1599
/gene="LIMD1"
/number=3
/experiment="experimental evidence, no additional details
recorded"
exon 1600..1662
/gene="LIMD1"
/number=4
/experiment="experimental evidence, no additional details
recorded"
exon 1663..1793
/gene="LIMD1"
/number=5
/experiment="experimental evidence, no additional details
recorded"
exon 1794..1845
/gene="LIMD1"
/number=6
/experiment="experimental evidence, no additional details
recorded"
exon 1846..1914
/gene="LIMD1"
/number=7
/experiment="experimental evidence, no additional details
recorded"
exon 1915..5067
/gene="LIMD1"
/number=8
/experiment="experimental evidence, no additional details
recorded"
variation 4612
/replace="a"
BASE COUNT 1138 a 1308 c 1326 g 1295 t
ORIGIN
1 gcccggacac ctgtctgcag catggataag tatgacgacc tgggcctgga ggccagtaaa
61 ttcatcgagg acctgaacat gtatgaggcc tctaaggatg ggctcttccg agtggacaag
121 ggtgcaggca acaaccccga gtttgaggaa actcgcaggg tgttcgccac caagatggcc
181 aaaatccacc tccagcagca gcagcagcag ctcctgcagg aggagactct gcccaggggg
241 agtagaggcc ctgtcaatgg agggggccgc ctgggcccac aggcccgttg ggaagttgtg
301 ggcagcaagc tgactgtgga tggtgctgcc aagcctcctc ttgctgcctc gacaggggca
361 cctggggcag tcaccaccct cgctgctggg cagcccccgt acccaccgca ggagcagaga
421 tccaggccat acctgcatgg cacgaggcat ggcagccagg actgtggttc cagggagagc
481 ctggcgactt ctgagatgtc tgctttccac cagccaggcc cctgtgagga tccttcctgc
541 ctcactcatg gagactatta tgacaacctc tccttggcaa gcccaaagtg gggtgacaaa
601 ccaggagtgt cccccagcat cggcctgagt gtagggagtg ggtggcctag ctccccgggg
661 agtgacccac cactgcccaa accctgcggg gaccatcccc taaatcaccg acagctctcc
721 ctgagctcca gcaggtcttc tgagggtagc ctcggtggtc agaatagtgg cattggtggc
781 cgcagcagcg agaagccaac aggcctttgg tccactgcct cctcccagcg ggtgagccct
841 ggcctgcctt ccccaaactt ggagaacgga gcaccagctg tggggcctgt tcagcccagg
901 actccttctg tgtcagcacc cttggccctg agctgcccca ggcaaggagg tcttccaaga
961 tcaaactcgg ggctgggggg tgaggtttca ggtgtgatgt ccaaacccaa tgtggacccc
1021 caaccctggt tccaggatgg gcccaaatct tacctttcca gttctgcccc gtcatcctcg
1081 ccagctggcc tggacggttc acagcagggt gcggtccctg ggctggggcc gaagcctggc
1141 tgcacagacc ttggcactgg tcccaagctc agccccacca gtcttgtcca tccagtgatg
1201 tccaccctgc ctgagttatc ttgtaaagag ggtcccctgg gctggtcttc tgatggtagc
1261 ctgggatctg tgctcctgga cagccccagc tcccctaggg taaggctgcc ctgccagccc
1321 ctcgtcccag gtcctgagct gagaccctct gctgctgagt tgaaattaga agccctcacc
1381 caacgtctgg agcgagagat ggatgctcac ccgaaggctg attactttgg agcctgtgtg
1441 aaatgcagca aaggggtgtt tggggctggc caggcctgtc aggccatggg gaacctctac
1501 catgacacat gcttcacctg tgcagcttgc agccggaagc tgagaggaaa agccttttat
1561 tttgtcaacg gcaaagtgtt ttgtgaagaa gacttcctgt actctggttt ccagcagtcg
1621 gctgacaggt gttttctttg tggacatctg atcatggaca tgatcctgca agccctgggg
1681 aagtcctacc accccggctg tttccgctgt gtcatctgta atgagtgttt ggatggggtg
1741 cccttcaccg tggactcaga gaacaagatc tactgtgtcc gagattacca caaggtgctg
1801 gcccccaagt gtgcagcctg tgggcttccc atccttccac ctgagggctc agatgagacc
1861 atccgtgtcg tgtccatgga cagagactac cacgtggagt gttaccactg cgaggactgt
1921 ggtctggagc tcaatgatga agatggccac cgctgttatc cgctggagga ccacctgttc
1981 tgtcactcct gccacgtgaa gaggctggag aagagaccct catctacagc ccttcaccag
2041 caccacttct agccagagcc acttgcagac atcacggcag gggatgagga gccggggttg
2101 ctgctgctgc ttccggtggc ccctggggtg gaagtggggt aggggaagag gaggggcagg
2161 agggagagtt cctgtgagca tgtggggggt gcctttcctt taaccaggga ggtgaacact
2221 acctgcctcc tgcgtgtatt ttccaagtgc ttttctctgt tgccacattt tcctcaggtt
2281 actcaggaaa atgctccagc atgtgcgagc acatgacctg aggttgcatc atagcaccaa
2341 aggaatcctc ctgtcccctc tgggaacatt tcatgcttca gagggagagg tttttattga
2401 gcttgtttca caatatcccc ttgaagggac agctcagctg ccaatacatt caaccctttc
2461 tcttccttca ggaaaatacc tatacccaaa tgttccctcc cccgacatat atcatggcat
2521 gacttaaggc ttcttttcac ctgagagctt cagttcttct gcagaatggc tgcaaattta
2581 attgcattaa ggcaagaagg aagctctaat gtgtgctttg tatcctaaga taaatttgct
2641 tagaaaacca gagtcaagat ttgaaatagg tgaggcaggg tttcctcctt agacactgac
2701 agcattctcc gtaccccttc aaatccttac tctcctaaag gcagctgagt ccgcgacaga
2761 aatttgccct atgggagtaa aacatacttt gggagaagaa cttggtgcag gcaccaggat
2821 tttttttttt gcccacgtgt ttgcgctgtt tttctctgga gttctcaaga gttggtgact
2881 tggaaggccg cttctgcaag gcaagtctca ggaacccatg caggtacatc gcttgcacct
2941 gtttttagct tatttaatga cgggcttttg ggaagagctg cccgcatact gagagacagc
3001 ttcttataaa caaggagagt ttttgtgtgt gcgagatctc taagccagcg tgggagggag
3061 cgcctcagga taagttatta tattcatttc gttggtttct ctcctgccca attcttggca
3121 caggcattat gtttgaagaa accaggataa ggtacactgc ttttgtctgt ttaatttttt
3181 tagttgtttc ccttcacttt cagtcttcca cacacaaaaa atacctcaca gagcttcacc
3241 aaatcacaga ttcaggagga atttggcttt cacactggac tcagatacct tcttcagtgt
3301 gttggaaatc actggcttca cacaggccca actccaactg gtcagggcag agtgatcgta
3361 actaaaggtc agtggggaat agatccgatt cagtgctttt gccttatgca tttcagcatc
3421 ctggctcccc agggtggcag gagctgagga agggccacac actggcaaga tttcaagacc
3481 actctctgca ctgaagaggt aaaatttgca ctgcaagtca catccctgag gccagaggtc
3541 agtacccttt ggtatttcga ttagaagaag ctgcaaaaga aaggcagccc attttaccat
3601 tgccagccag gccggggaca caggagccgg tgtgtgcact ctgcctccta acattgcacc
3661 cagagcaaga ggactgggtg ctgggctgca gaggccggtc agtggagccc ctagcacgtg
3721 tgaactcagg cttttcattg ggcccggctc cacttctagg ccatgttttg actcatttgg
3781 taaccattgc ctgtaagcag cacagaattg gtgccatgga ttatcttttc catgttgatg
3841 gaattcattc tgttggaatc ctttggccag atgtcacttc agccagggtg tgcatcatca
3901 ttggttcttt ttcacaggct gagcctcctg aaaacccatg aacgctgggg ctggggaagt
3961 gaaccctgag gtggggaccc tctcttccca tcaaatcatc cagctcagtg tggggcgtgg
4021 caggggggta aatgaagcca gccaatgtgt taacctgtct ctgtcaacct aagaatgttg
4081 gccttactga cacacctttg ctccatgttc aagaccagaa gtagctggga tttgtttgca
4141 aattgggtaa ttagtttaaa aatctgtgat tacattttta aatgaaattt tcaaagtggc
4201 ctagattgag gtgattcaga taggtttgcg aatataccat tttatattgt tgagaaagaa
4261 caaaaaggga atttccagat gtcctagaaa tcctagcaac agatttctct ggttgtcagt
4321 ttccctggag aaggcgccag ataggaatct ccaatcagtt gtttttctct tcgcttcagg
4381 cccttacaca aaagccatga agagatgttc acctacccgg tattttaaat gttctgtaaa
4441 ttattagcca aatagaactg taatggggtt gtatttatgg gcgcctagaa agaaaacaca
4501 aggacttggt aggccaggaa gaaaagattt taaaatttag aatgaatagc ccttctgggt
4561 tttctttttg acaattcttg gacttgaggt aaaacaagga ggattgtggc cggatttcag
4621 atcccaaagc cagcctccat cttaggcctt tgcctcattg tgccttttag gttttcttac
4681 ccaccgtctc ctgttttgtc ttttttttct tttctcctac ccctatcttg ggacattcag
4741 aaactgcctg ggtggtttga gaagagacaa cccagtttga tctgcaatac aaggatccat
4801 tcgtaatctc tctctcactg atgttattcc cccatctgcc gtcttggttc atctcaccac
4861 agaagggcat ttagtcctac ccagccatcg gctgcggtat gacagcagga tggcacttcc
4921 catttctctg tggttagtgc tcgagtgaaa acctctttca gctgagtcct ctgaggttct
4981 gctgttgagt cctgggtggc tgatggaatg attgaggagg tctggtcacc ctcaagcgcc
5041 gtcatcgcct tgtttccatg ggcttct
//