LOCUS       AJ011415                5859 bp    mRNA    linear   HUM 07-OCT-2008
DEFINITION  Homo sapiens mRNA for plexin-B1 plasma membrane receptor, splice
            variant R (plexin-B1/SEP gene).
ACCESSION   AJ011415
VERSION     AJ011415.1
KEYWORDS    plasma membrane receptor; plexin-B1/SEP gene; semaphorin receptor;
            splice variant R.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 5859)
  AUTHORS   Tamagnone L.
  JOURNAL   Submitted (18-SEP-1998) to the INSDC. Tamagnone L., Molecular
            Oncology, Institute for Cancer Research, University of Torino, SP
            142, Candiolo, Torino, 10060, ITALY.
REFERENCE   2
  AUTHORS   Tamagnone L., Artigiani S., Longati P., Comoglio P.M.
  TITLE     The SEX/plexin receptor family
  JOURNAL   Unpublished.
REFERENCE   3
  AUTHORS   Tamagnone L., Artigiani S., Chen H., He Z., Ming G.L., Song H.L.,
            Chedotal A., Winberg M.L., Goodman C.S., Poo M.M.,
            Tessier-Lavigne M., Comoglio P.M.
  TITLE     Plexins are a large family of receptors for transmembrane,
            secreted, and GPI-anchored semaphorins in vertebrates
  JOURNAL   Cell 99(1), 71-80(1999).
   PUBMED   10520995
FEATURES             Location/Qualifiers
     source          1..5859
                     /db_xref="H-InvDB:HIT000244511"
                     /organism="Homo sapiens"
                     /chromosome="3"
                     /mol_type="mRNA"
                     /cell_line="GTL-16"
                     /cell_type="gastric carcinoma"
                     /db_xref="taxon:9606"
     CDS             1..5859
                     /gene="plexin-B1/SEP"
                     /product="plexin-B1/SEP receptor"
                     /function="plasma membrane receptor"
                     /note="splice variant R"
                     /note="extracellular domain sligthly shorter than
                     canonical Sep and acquires an RGD motif at splice
                     junction"
                     /db_xref="GOA:O43157"
                     /db_xref="H-InvDB:HIT000244511.13"
                     /db_xref="HGNC:HGNC:9103"
                     /db_xref="InterPro:IPR001627"
                     /db_xref="InterPro:IPR002165"
                     /db_xref="InterPro:IPR002909"
                     /db_xref="InterPro:IPR008936"
                     /db_xref="InterPro:IPR013548"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR014756"
                     /db_xref="InterPro:IPR015943"
                     /db_xref="InterPro:IPR016201"
                     /db_xref="InterPro:IPR031148"
                     /db_xref="InterPro:IPR036352"
                     /db_xref="InterPro:IPR041019"
                     /db_xref="InterPro:IPR041362"
                     /db_xref="PDB:2JPH"
                     /db_xref="PDB:2OS6"
                     /db_xref="PDB:2R2O"
                     /db_xref="PDB:2REX"
                     /db_xref="PDB:3HM6"
                     /db_xref="PDB:3OL2"
                     /db_xref="PDB:3SU8"
                     /db_xref="PDB:3SUA"
                     /db_xref="PDB:5B4W"
                     /db_xref="UniProtKB/Swiss-Prot:O43157"
                     /protein_id="CAB56222.1"
                     /translation="MPALGPALLQALWAGWVLTLQPLPPTAFTPNGTYLQHLARDPTS
                     GTLYLGATNFLFQLSPGLQLEATVSTGPVLDSRDCLPPVMPDECPQAQPTNNPNQLLL
                     VSPGALVVCGSVHQGVCEQRRLGQLEQLLLRPERPGDTQYVAANDPAVSTVGLVAQGL
                     AGEPLLFVGRGYTSRGVGGGIPPITTRALWPPDPQAAFSYEETAKLAVGRLSEYSHHF
                     VSAFARGASAYFLFLRRDLQAQSRAFRAYVSRVCLRDQHYYSYVELPLACEGGRYGLI
                     QAAAVATSREVAHGEVLFAAFSSAAPPTVGRPPSAAAGASGASALCAFPLDEVDRLAN
                     RTRDACYTREGRAEDGTEVAYIEYDVNSDCAQLPVDTLDAYPCGSDHTPSPMASRVPL
                     EATPILEWPGIQLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQG
                     SAVSRDLTFDGTFEHLYVMTQSTLLKVPVASCAQHLDCASCLAHRDPYCGWCVLLGRC
                     SRRSECSRGQGPEQWLWSFQPELGCLQVAAMSPANISREETREVFLSVPDLPPLWPGE
                     SYSCHFGEHQSPALLTGSGVMCPSPDPSEAPVLPRGADYVSVSVELRFGAVVIAKTSL
                     SFYDCVAVTELRPSAQCQACVSSRWGCNWCVWQHLCTHKASCDAGPMVASHQSPLVSP
                     DPPARGDGDSAELEGPPAPLILPSSLDYQYDTPGLWELEEATLGASSCPCVESVQGST
                     LMPVHVEREIRLLGRNLHLFQDGPGDNECVMELEGLEVVVEARVECEPPPDTQCHVTC
                     QQHQLSYEALQPELRVGLFLRRAGRLRVDSAEGLHVVLYDCSVGHGDCSRCQTAMPQY
                     GCVWCEGERPRCVTREACGEAEAVATQCPAPLIHSVEPLTGPVDGGTRVTIRGSNLGQ
                     HVQDVLGMVTVAGVPCAVDAQEYEVSSSLVCITGASGEEVAGATAVEVPGRGRGVSEH
                     DFAYQDPKVHSIFPARGPRAGGTRLTLNGSKLLTGRLEDIRVVVGDQPCHLLPEQQSE
                     QLRCETSPRPTPATLPVAVWFGATERRLQRGQFKYTLDPNITSAGPTKSFLSGGREIC
                     VRGQNLDVVQTPRIRVTVVSRMLQPSQGLGRRRRVVPETACSLGPSCSSQQFEEPCHV
                     NSSQLITCRTPALPGLPEDPWVRVEFILDNLVFDFATLNPTPFSYEADPTLQPLNPED
                     PTMPFRHKPGSVFSVEGENLDLAMSKEEVVAMIGDGPCVVKTLTRHHLYCEPPVEQPL
                     PRHHALREAPDSLPEFTVQMGNLRFSLGHVQYDGESPGAFPVAAQVGLGVGTSLLALG
                     VIIIVLMYRRKSKQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGS
                     GIPFLDYKVYAERIFFPGHRESPLHRDLGVPESRRPTVEQGLGQLSNLLNSKLFLTKF
                     IHTLESQRTFSARDRAYVASLLTVALHGKLEYFTDILRTLLSDLVAQYVAKNPKLMLR
                     RTETVVEKLLTNWMSICLYTFVRDSVGEPLYMLFRGIKHQVDKGPVDSVTGKAKYTLN
                     DNRLLREDVEYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVP
                     LTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVP
                     CLTKHVLRENQDYVPGERTPMLEDVDEGGIRPWHLVKPSDEPEPPRPRRGSLRGGERE
                     RAKAIPEIYLTRLLSMKGTLQKFVDDLFQVILSTSRPVPLAVKYFFDLLDEQAQQHGI
                     SDQDTIHIWKTNSLPLRFWINIIKNPQFVFDVQTSDNMDAVLLVIAQTFMDACTLADH
                     KLGRDSPINKLLYARDIPRYKRMVERYYADIRQTVPASDQEMNSVLAELSWNYSGDLG
                     ARVALHELYKYINKYYDQIITALEEDGTAQKMQLGYRLQQIAAAVENKVTDL"
     sig_peptide     1..90
                     /gene="plexin-B1/SEP"
     mat_peptide     91..5854
                     /gene="plexin-B1/SEP"
                     /product="plexin-B1/SEP receptor"
                     /note="splice variant R"
BASE COUNT         1105 a         1778 c         1815 g         1161 t
ORIGIN      
        1 atgcctgctc tgggcccagc tcttctccag gctctctggg ccgggtgggt cctcaccctc
       61 cagccccttc caccaactgc attcactccc aatggcacgt atctgcagca cctggcaagg
      121 gaccccacct caggcaccct ctacctgggg gctaccaact tcctgttcca gctgagccct
      181 gggctgcagc tggaggccac agtgtccacc ggccctgtgc tagacagcag ggactgcctg
      241 ccacctgtga tgcctgatga gtgcccccag gcccagccta ccaacaaccc gaatcagctg
      301 ctcctggtga gcccaggggc cctggtggta tgcgggagcg tgcaccaggg ggtctgtgaa
      361 cagcggcgcc tggggcagct cgagcagctg ctgctgcggc cagagcggcc tggggacaca
      421 caatatgtgg ctgccaatga tcctgcggtc agcacggtgg ggctggtagc ccagggcttg
      481 gcaggggagc ccctcctgtt tgtggggcga ggatacacca gcaggggtgt ggggggtggc
      541 attccaccca tcacaacccg ggccctgtgg ccgcccgacc cccaagctgc cttctcctat
      601 gaggagacag ccaagctggc agtgggccgc ctctccgagt acagccacca cttcgtgagt
      661 gcctttgcac gtggggccag cgcctacttc ctgttcctgc ggcgggacct gcaggctcag
      721 tctagagctt ttcgtgccta tgtatctcga gtgtgtctcc gggaccagca ctactactcc
      781 tatgtggagt tgcctctggc ctgcgaaggt ggccgctacg ggctgatcca ggctgcagct
      841 gtggccacgt ccagggaggt ggcgcatggg gaggtgctct ttgcagcttt ctcctcggct
      901 gcacccccca ctgtgggccg gcccccatcg gcggctgctg gggcatctgg agcctctgcc
      961 ctctgtgcct tccccctgga tgaggtggac cggcttgcta atcgcacgcg agatgcctgc
     1021 tacacccggg agggtcgtgc tgaggatggg accgaggtgg cctacatcga gtatgatgtc
     1081 aattctgact gtgcacagct gccagtggac accctggatg cttatccctg tggctcagac
     1141 cacacgccca gccccatggc cagccgggtc ccgctggaag ccacaccaat tctggagtgg
     1201 ccagggattc agctaacagc tgtggcagtc accatggaag atggacacac catcgctttc
     1261 ctgggtgata gtcaagggca gctgcacagg gtctacttgg gcccagggag cgatggccac
     1321 ccatactcca cacagagcat ccagcagggg tctgcagtga gcagagacct cacctttgat
     1381 gggacctttg agcacctgta tgtcatgacc cagagcacac ttctgaaggt tcctgtggct
     1441 tcctgtgctc agcacctgga ctgtgcatct tgccttgctc acagggaccc atactgtggg
     1501 tggtgcgtgc tccttggcag gtgcagtcgc cgttctgagt gctcgagggg ccagggccca
     1561 gagcagtggc tatggagctt ccagcctgag ctgggctgtc tgcaagtggc agccatgagt
     1621 cctgccaaca tcagccgaga ggagacgagg gaggttttcc tatcagtgcc agacctgcca
     1681 cccctgtggc caggggagtc atattcctgc cactttgggg aacatcagag tcctgccctg
     1741 ctgactggtt ctggtgtgat gtgcccctcc ccagacccta gtgaggcccc agtgctgccg
     1801 agaggagccg actacgtatc cgtgagcgtg gagctcagat ttggcgctgt tgtgatcgcc
     1861 aaaacttccc tctctttcta tgactgtgtg gcggtcactg aactccgccc atctgcgcag
     1921 tgccaggcct gtgtgagcag ccgctggggg tgtaactggt gtgtctggca gcacctgtgc
     1981 acccacaagg cctcgtgtga tgctgggccc atggttgcaa gccatcagag cccgcttgtc
     2041 tccccagacc ctcctgcaag aggtgatgga gactcagcag agcttgaggg ccctcccgcc
     2101 cccctcatcc tcccgtccag cctcgactac cagtatgaca cccccgggct ctgggagctg
     2161 gaagaggcga ccttgggggc aagctcctgc ccctgtgtgg agagcgttca gggctccacg
     2221 ttgatgccgg tccatgtgga gcgggaaatc cggctgctag gcaggaacct gcaccttttc
     2281 caggatggcc caggagacaa tgagtgtgtg atggagctgg agggcctcga ggtggtggtt
     2341 gaggcccggg tcgagtgtga gccacctcca gatacccagt gccatgtcac ctgccagcag
     2401 caccagctca gctatgaggc tctgcagccg gagctccgtg tggggctgtt tctgcgtcgg
     2461 gccggccgtc tgcgtgtgga cagtgctgag gggctgcatg tggtactgta tgactgttcc
     2521 gtgggacatg gagactgcag ccgctgccaa actgccatgc cccagtatgg ctgtgtgtgg
     2581 tgtgaggggg agcgtccacg ttgtgtgacc cgggaggcct gtggtgaggc tgaggctgtg
     2641 gccacccagt gcccagcgcc cctcatccac tcggtggagc cactgactgg gcctgtagac
     2701 ggaggcaccc gtgtcaccat caggggctcc aacctgggcc agcatgtgca ggatgtgctg
     2761 ggcatggtca cggtggctgg agtgccctgt gctgtggatg cccaggagta cgaggtctcc
     2821 agcagcctcg tgtgcatcac cggggccagt ggggaggagg tggccggcgc cacagcggtg
     2881 gaggtgccgg gaagaggacg tggtgtctca gaacacgact ttgcctacca ggatccgaag
     2941 gtccattcca tcttcccggc ccgcggcccc agagctgggg gcacccgtct caccctgaat
     3001 ggctccaagc tcctgactgg gcggctggag gacatccgag tggtggttgg agaccagcct
     3061 tgtcacttgc tgccggagca gcagtcagaa caactgcggt gtgagaccag cccacgcccc
     3121 acgcctgcca cgctccctgt ggctgtgtgg tttggggcca cggagcggag gcttcaacgc
     3181 ggacagttca agtatacctt ggaccccaac atcacctctg ctggccccac caagagcttc
     3241 ctcagtggag gacgtgagat atgcgtccgt ggccagaatc tggacgtggt acagacgcca
     3301 agaatccggg tgaccgtggt ctcgagaatg ctgcagccca gccaggggct tggacggagg
     3361 cgtcgcgtgg tcccggagac ggcatgttcc cttggaccct cctgcagtag ccagcaattt
     3421 gaggagccgt gccatgtcaa ctcctcccag ctcatcacgt gccgcacacc tgccctccca
     3481 ggcctgcctg aggacccctg ggtccgggtg gaatttatcc ttgacaacct ggtctttgac
     3541 tttgcaacac tgaaccccac acctttctcc tatgaggccg accccaccct gcagccactc
     3601 aaccctgagg accccaccat gccattccgg cacaagcctg ggagtgtgtt ctccgtggag
     3661 ggggagaacc tggaccttgc aatgtccaag gaggaggtgg tggctatgat aggggatggc
     3721 ccctgtgtgg tgaagacgct gacgcggcac cacctgtact gcgagccccc cgtggagcag
     3781 cccctgccac ggcaccatgc cctccgagag gcacctgact ctttgcctga gttcacggtg
     3841 cagatgggga acttgcgctt ctccctgggt cacgtgcagt atgacggcga gagccctggg
     3901 gcttttcctg tggcagccca ggtgggcttg ggggtgggca cctctcttct ggctctgggt
     3961 gtcatcatca ttgtcctcat gtacaggagg aagagcaagc aggccctgag ggactataag
     4021 aaggttcaga tccagctgga gaatctggag agcagtgtgc gggaccgctg caagaaggaa
     4081 ttcacagacc tcatgactga gatgaccgat ctcaccagtg acctcctggg cagcggcatc
     4141 cccttcctcg actacaaggt gtatgcggag aggatcttct tccctgggca ccgcgagtcg
     4201 cccttgcacc gggacctggg tgtgcctgag agcagacggc ccactgtgga gcaagggctg
     4261 gggcagctct ctaacctgct caacagcaag ctcttcctca ccaagttcat ccacacgctg
     4321 gagagccagc gcaccttttc agctcgggac cgtgcctacg tggcatctct gctcaccgtg
     4381 gcactgcatg ggaagcttga gtatttcact gacatcctcc gcactctgct cagtgacctg
     4441 gttgcccagt atgtggccaa gaaccccaag ctgatgctgc gcaggacaga gactgtggtg
     4501 gagaagctgc tcaccaactg gatgtccatc tgtctgtata ccttcgtgag ggactccgta
     4561 ggggagcctc tgtacatgct ctttcgaggg attaagcacc aagtggataa ggggccagtg
     4621 gacagtgtga caggcaaggc caaatacacc ttgaacgaca accgcctgct cagagaggat
     4681 gtggagtacc gtcccctgac cttgaatgca ctattggctg tggggcctgg ggcaggagag
     4741 gcccagggcg tgcccgtgaa ggtcctagac tgtgacacca tctcccaggc aaaggagaag
     4801 atgctggacc agctttataa aggagtgcct ctcacccagc ggccagaccc tcgcaccctt
     4861 gatgttgagt ggcggtctgg ggtggccggg cacctcattc tttctgacga ggatgtcact
     4921 tctgaggtcc agggtctgtg gaggcgcctg aacacactgc agcattacaa ggtcccagat
     4981 ggagcaactg tggccctcgt cccctgcctc accaagcatg tgctccggga aaaccaggat
     5041 tatgtccctg gagagcggac cccaatgctg gaggatgtag atgagggggg catccggccc
     5101 tggcacctgg tgaagccaag tgatgagccg gagccgccca ggcctcggag gggcagcctt
     5161 cggggcgggg agcgtgagcg cgccaaggcc atccctgaga tctacctgac ccgcctgctg
     5221 tccatgaagg gcaccctgca gaagttcgtg gatgacctgt tccaggtgat tctcagcacc
     5281 agccgccccg tgccgctcgc tgtgaagtac ttctttgacc tgctggatga gcaggcccag
     5341 cagcatggca tctccgacca ggacaccatc cacatctgga agaccaacag cttgcctctg
     5401 aggttctgga tcaatataat aaaaaacccg cagtttgtgt tcgacgtgca aacatctgat
     5461 aacatggatg cggtgctcct tgtcattgca cagaccttca tggacgcctg caccctggcc
     5521 gaccacaagc tgggccggga ctccccgatc aacaaacttc tgtatgcacg ggacattccc
     5581 cggtacaagc ggatggtgga aaggtactat gcagacatca gacagactgt cccagccagc
     5641 gaccaagaga tgaactctgt cctggctgaa ctgtcctgga actactccgg agacctcggg
     5701 gcgcgagtgg ccctgcatga actctacaag tacatcaaca agtactatga ccagatcatc
     5761 actgccctgg aggaggatgg cacggcccag aagatgcagc tgggctatcg gctccagcag
     5821 attgcagctg ctgtggaaaa caaggtcaca gatctatag
//