LOCUS AJ010230 5112 bp mRNA linear HUM 29-NOV-1999
DEFINITION Homo sapiens RET finger protein-like 1 antisense transcript,
partial.
ACCESSION AJ010230
VERSION AJ010230.1
KEYWORDS antisense transcript; RET finger protein-like 1; rfpl1ant gene.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5112)
AUTHORS Seroussi E.
JOURNAL Submitted (11-AUG-1998) to the INSDC. Seroussi E., Department of
Molecular Medicine, Karolinska Hospital, Center of Molecular
Medicine (CMM), Building L-8.00, Stockholm, S-171 76, SWEDEN.
REFERENCE 3
AUTHORS Seroussi E., Kedra D., Pan H.Q., Peyrard M., Schwartz C.,
Scambler P., Donnai D., Roe B.A., Dumanski J.P.
TITLE Duplications on human chromosome 22 reveal a novel Ret Finger
Protein-like gene family with sense and endogenous antisense
transcripts
JOURNAL Genome Res. 9(9), 803-814(1999).
PUBMED 10508838
FEATURES Location/Qualifiers
source 1..5112
/db_xref="H-InvDB:HIT000244397"
/organism="Homo sapiens"
/chromosome="22"
/map="q12"
/mol_type="mRNA"
/db_xref="taxon:9606"
prim_transcript 1..5112
/gene="rfpl1ant"
/note="RET finger protein-like 1 antisense transcript"
/note="expressed in brain"
repeat_region 1027..1084
/rpt_family="MER52C"
repeat_region 1256..1562
/rpt_family="AluYb8"
repeat_region 2359..2458
/rpt_family="MER5A"
repeat_region 2471..2485
/rpt_family="MER5B"
repeat_region 2486..2778
/rpt_family="AluY"
repeat_region 2779..2833
/rpt_family="MER5B"
repeat_region 3648..3950
/rpt_family="AluY"
repeat_region 3959..4175
/rpt_family="AluJo"
regulatory 5093..5098
/gene="rfpl1ant"
/experiment="experimental evidence, no additional details
recorded"
/regulatory_class="polyA_signal_sequence"
BASE COUNT 1451 a 1161 c 1190 g 1310 t
ORIGIN
1 tgggggctta tttggcctcc ccaggatgga ctggagcatc agtagtgccc gggtttatca
61 caggacagat actcaagaca ctcttatcac cattaggtgg acttggagga gcaaaaaaca
121 agtgcagtgg ctcctcagca gagacactcc tgaatgtata gacatgggaa ccaccttcag
181 catcaaaaaa ggaaacgttc tgcatgccca tatccagaaa aatccccact cgctgtaact
241 tgcggtctac gaagaggaaa gtcagcggca ccgtgctggc agagaggcgg cttccatccc
301 tcaaactcac agtccagaat ccacgctctg tggtcagatg gatcctccct ttgcggtgaa
361 cagattctct gcagactccc aggtcccatt ctgtgcttgt tcccacgtcc acctcccagt
421 agtggcggcc acaggtaaag cgaggggagc ccaggatgca aatggacacg tcaaatctct
481 cggcaaggtc ttgccgattc tgtgtgatgc acccacttcg gacgctcctg aggtcgtcag
541 aaatgaggag gaagttgttg gctgtgtcgg catccaaggt catatccact gtgaaaagga
601 aaaaaagttg atcagaaaat ggacagaagc caaccccatg cctctcctct acttcaaagg
661 cccaaatatc tcttgacttt ggtttcttta attctcttct tcccccaaaa tcaaaacttt
721 tcatgaggca acttccctga ctagttcaaa ttctcatagg tatgctttgt ggcaataccc
781 aactcttatt cacagtagca attattttac tttatgtcac gtgtttgctt cattggactt
841 ttcttcattt agagtggagg gtctctgaag gcagacacca tgaccccctt tctaccacct
901 tgatgcatga aaaaatgaat gataattaag acaatgcaaa tggtcgatgt taaatatgtt
961 tctgcttcca tcttgtattg ctcaactcag tatatagagc atgattccag gcctttgttt
1021 tccatgtttg taagcaaatt aattgtgcat ggttctgaca gcaggtaggg tatctctgca
1081 gctgacaatg tgatgacaga ggtgccggtc ctggacatta ggaggctcca aggccaggag
1141 gaagaggggg gccttagatg aaagaatgtt ttccatccta catgggaggt gaaaccttaa
1201 gcaaaacaat ggtaaatttt ggagtgaaga gaaaggtatt tgaaagttgt ttgttggctg
1261 agcgcggtgg ctcacacctg taatcccagc actttgggag gccgagacgg gtggatcacg
1321 aggtcaggag atcgagacca tcctggctaa cacgtgaaac cctgtctcta ctaaaaaaca
1381 tacaaaaaaa ttagccggac atggtggcgg gtgcctgtag tcctagctac ttggtagact
1441 gaggcaggag aatggcatga acccaggagg cggagcttgc aatgagcaga gatcatgcca
1501 ctgcacctcc agcctaggcg gcagagcgag actccatctc aaaaaataaa aaaaaaaaga
1561 aagttgttcg tcataactga ctgatcgtag agaataaggg cagtaaatac aaaggtcaat
1621 aatttaatgc attgggtatg tggttgatag gtgaagctgc caattctcat ggaggaggca
1681 gtgtgatctg gcctaaagaa aattaattgt ccagagcatt ctgaaaaaaa aatctacaga
1741 acatatgatc cttcaagtca aaaaactgat gatcaccaat atagatttta tagattacag
1801 taagacttga ggagactgat tgctgtttga tggtgaatta gggaatgaaa tgagatgagt
1861 ggacatggac aaggaaggag gaagagggtt ccaaacatga cttaggcagg gtgaatctgt
1921 cctccatatt tcagcagaga cacagtcagg tatgggtagg tggatgagta gagatcatgg
1981 gtgtcagggc agaagccacc accatttata ggtgtaattc tttgcccagg ctgaccataa
2041 cctcttcatt taaatgtccc tattccccag agttatggag agtgatagta tttcctgtag
2101 ccaggacccc tgttgaagtc catggcacac cgatgaggag accagcgtct gcaactcgcc
2161 ccactcacag aaacaaacac cataggtgct ccattccaaa ctcttcccaa ccctggggtg
2221 aggttgtttg gtacagtggg tgccaatact cactgtgcat tagaattacc aggcccattt
2281 aaatgtcaga gtcctgggaa cctttgctag agagaaattc aaattaagtt gctctgtgtt
2341 tttgctactc agcaaagtcc ccaagccagc gggatcaatc ctgagacttc ccagttcagc
2401 atctgcattt taacaagatc cccaggtaat ctgagcacac taagtttaga gaatcccttg
2461 tctaacccat gacatagaca tcaggttttt ttttttgaga cggagtctca ctctgtcacc
2521 caggctggag tgcagtggtg caatcttggc tcactgcaag ctccgccccc cccaggttaa
2581 cgccattctc ctgcctcaac ccccaagtag ctgggactac aggcacccac caccaagcct
2641 ggctaatttt ttgtattttt agtagagaca gggtttcacc gtgttatcca ggatggtccc
2701 gatctcctga cctcgtgatc cacccgcctc ggcctcccaa agtgctgaca ttacaggcat
2761 gagccaccat gcccagccag cctttttttt ggagatcacc aggtgattct gtatgttgtc
2821 agggctgaga atctgatgat gaagaagcat ctcaatttta ggtgccagac agcagctaat
2881 ccccatatgg aatgaggggc cagttgcaca gatgattttt cctggtctgg tcgtaggaag
2941 ggggcagtgt atacagatcc ctcaccttgg aacttccgca tccttgggtt catctgcaga
3001 atcttcttca gcttgggctc cagttccttg atgtgggaag ccagcctctc tagctgccaa
3061 ctgggcctga ttttgttctt ctgagagacc atggaacagc aacagcaaag tagatcctcc
3121 ccatggggct ccttctgcag tgaattgatg cacttgaagc agacagcgca tccacactcc
3181 agggacattg gtttctctag atagtctgag cagacgggac agctgcttgc ttcttggaag
3241 agtgcagcca tgtccactgc caggggaaaa gtgcacaagg gaagaaaatt tccgtgaggt
3301 gaaagcctgt tagttgtgac aagtgacaac cttttcatgc ataaaggtat tgcgtcccag
3361 ctttgtcact tctagaacaa gaccatgagt acaaacactc aagcacatcc ccccaccccc
3421 cgtcttcaga gatttgaagt tctattggga aagaaagtca cgaatcatca ctgtgctctg
3481 aactgaggtg gaggaagggt ccattctact ggtgacccag caactgagcc tgagccagtg
3541 acacggcagc acccatgtga ggaacagcga gctggggtca tttcacctcc tcctagggga
3601 accccagcaa gagattgatt gatgaacata agaattaggg gctgggaggc cgggcgtggt
3661 ggctcaggcc tataatccca gcactttggg aggctgacgt gagtggatca tctgaggtcg
3721 tcaaaagttc gagaccagcc tgatgggtga aaccccatct ctactgaaaa tacaaaagaa
3781 ttagccaggc gtggtggcac acgcctgtaa tcccagatac ttgggaggct gaggcaggag
3841 aattgcttga acctgggagg caaaggttgc agtgagccaa gatccagcca ttgcactccg
3901 gcctggacaa cagagtgaga caccatctca aaaaaaaaaa aaaaaaaaaa gagagggact
3961 ggatgcagta gctcacatct gtaatcccag cactttgcga ggccaaggct ggaagatccc
4021 ttgagccaag gatttgagat cagcctgggc aacacaggaa gaccccctct ctacaaataa
4081 tagaaaaatt agcagtgagc agagatcaca ccaggtcact ccaacctgga caacagagtt
4141 aagaccctgt ctcaccaaaa aaaaaaaaaa aaaaatcaca tccttctcca gccttggaaa
4201 tgaataccaa attgactgcc accactccta gactggagat ctggggatcc agggtgactg
4261 gttttcaact ctgaggcagc actcagacag cctttgttga attcattaat tacgaatttc
4321 tctcattcat cccccaaggc ataaccccca tttctaggca tctaaggagg aaaaacacac
4381 acacaggcat gggctcacct cttctgctgg aagctcctct gtcctccagc tgcttccact
4441 gggcgctcag gtcttgtgcg gaaggggcac atgagggcgt tttattggtg agattcccac
4501 ctcccactgg gtcatgccct tccacaccct ctaacctaat gaggctttga tttaattata
4561 acagggaatt aggtttttac tggtgatata tctccagtta attgtaactt tagtaaatcc
4621 ttcatcctga cagtgtattt ttctttcata tgaagataag attaaattgc ctttatatta
4681 aattaggctt aatgtactaa cttcaaaagc ttattttaga gatgtttcca tcagttgtca
4741 gtaaagataa ttcctgtaat atgttgtagg cttcaagctt tgcttggaaa cctgaagtat
4801 taagtatgat tggatttgca attttacaaa atggtttaaa ttcatataca tcagactcaa
4861 aggtaatagg ggcatgcatt ccattgagga aattctaggg aatttttatt tattttcatt
4921 ggtttatttc tggttttgaa aaaatttcat aattcatagg aaaaaattgg ataattacta
4981 ttttgacaaa tgaccattaa gcttcttgga ccttgagtac ttcacacagt gttaagataa
5041 aagtcacaat ttaaaaaaaa aagatgattt tcttgtgaaa cttgtgttct caaataaaaa
5101 ttgttacccg tg
//