LOCUS AJ009937 4337 bp mRNA linear HUM 07-OCT-2008 DEFINITION Homo sapiens mRNA for nuclear hormone receptor PRR2. ACCESSION AJ009937 VERSION AJ009937.1 KEYWORDS nuclear hormone receptor; orphan nuclear receptor; PRR2 gene. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4337) AUTHORS Heard D.J. JOURNAL Submitted (31-JUL-1998) to the INSDC. Heard D.J., Novo Nordisk A/S, Molecular Genetics, Novo Alle, DK-2880, Bagsvaerd, DENMARK. REFERENCE 2 AUTHORS Heard D.J., Holloway J., Hansen C., Tommerup N., Aagaard L., Vissing H. TITLE Identification of a novel protein isoform of the human nuclear hormone receptor PXR/SXR and localization to chromosome 3q12.1 - 13.3 JOURNAL Eur. J. Hum. Genet. 0, 0(0). FEATURES Location/Qualifiers source 1..4337 /db_xref="H-InvDB:HIT000244364" /organism="Homo sapiens" /chromosome="3" /map="q12-q13.3" /mol_type="mRNA" /tissue_type="liver" /tissue_type="intestine" /tissue_type="colon" /db_xref="taxon:9606" CDS 1771..3033 /transl_except=(pos:1771..1773,aa:Met) /gene="PRR2" /product="nuclear hormone receptor PRR2-C" /note="isoform with longer A/B domain, translation initiates at GUG-1771 5 fold less efficiently than at CUG-1840" /db_xref="GOA:O75469" /db_xref="HGNC:HGNC:7968" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="PDB:1ILG" /db_xref="PDB:1ILH" /db_xref="PDB:1M13" /db_xref="PDB:1NRL" /db_xref="PDB:1SKX" /db_xref="PDB:2O9I" /db_xref="PDB:2QNV" /db_xref="PDB:3CTB" /db_xref="PDB:3HVL" /db_xref="PDB:3R8D" /db_xref="PDB:4J5W" /db_xref="PDB:4J5X" /db_xref="PDB:4NY9" /db_xref="PDB:4S0S" /db_xref="PDB:4S0T" /db_xref="PDB:4X1F" /db_xref="PDB:4X1G" /db_xref="PDB:4XAO" /db_xref="PDB:4XHD" /db_xref="PDB:5A86" /db_xref="PDB:5X0R" /db_xref="PDB:6BNS" /db_xref="PDB:6DUP" /db_xref="UniProtKB/Swiss-Prot:O75469" /protein_id="CAB55493.1" /translation="MDPRGEVGAKNLPPNSPRGPEANLEVRPKESWNHTDFVHCEDTE SVPGKPSVNADEEVGGPQICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNARLRCPF RKGACEITRKTRRQCQACRLRKCLESGMKNEMIMSDEAVEERRALIKRKKSERTGTQP LGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSG GKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNT VFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISL FSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQ HTQRLLRIQDIHPFATPLMQELFGITGS" CDS 1840..3033 /gene="PRR2" /product="nuclear hormone receptor PRR2-A" /function="transcription factor" /note="full length receptor" /db_xref="GOA:O75469" /db_xref="H-InvDB:HIT000244364.14" /db_xref="HGNC:HGNC:7968" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="PDB:1ILG" /db_xref="PDB:1ILH" /db_xref="PDB:1M13" /db_xref="PDB:1NRL" /db_xref="PDB:1SKX" /db_xref="PDB:2O9I" /db_xref="PDB:2QNV" /db_xref="PDB:3CTB" /db_xref="PDB:3HVL" /db_xref="PDB:3R8D" /db_xref="PDB:4J5W" /db_xref="PDB:4J5X" /db_xref="PDB:4NY9" /db_xref="PDB:4S0S" /db_xref="PDB:4S0T" /db_xref="PDB:4X1F" /db_xref="PDB:4X1G" /db_xref="PDB:4XAO" /db_xref="PDB:4XHD" /db_xref="PDB:5A86" /db_xref="PDB:5X0R" /db_xref="PDB:6BNS" /db_xref="PDB:6DUP" /db_xref="UniProtKB/Swiss-Prot:O75469" /protein_id="CAB55492.1" /translation="MEVRPKESWNHTDFVHCEDTESVPGKPSVNADEEVGGPQICRVC GDKATGYHFNVMTCEGCKGFFRRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKC LESGMKNEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMK TFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGII SFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAG GFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAI TLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELF GITGS" CDS 2005..3033 /gene="PRR2" /product="nuclear hormone receptor PRR2-B" /note="truncated receptor" /db_xref="GOA:O75469" /db_xref="HGNC:HGNC:7968" /db_xref="InterPro:IPR000536" /db_xref="InterPro:IPR001628" /db_xref="InterPro:IPR001723" /db_xref="InterPro:IPR013088" /db_xref="InterPro:IPR035500" /db_xref="PDB:1ILG" /db_xref="PDB:1ILH" /db_xref="PDB:1M13" /db_xref="PDB:1NRL" /db_xref="PDB:1SKX" /db_xref="PDB:2O9I" /db_xref="PDB:2QNV" /db_xref="PDB:3CTB" /db_xref="PDB:3HVL" /db_xref="PDB:3R8D" /db_xref="PDB:4J5W" /db_xref="PDB:4J5X" /db_xref="PDB:4NY9" /db_xref="PDB:4S0S" /db_xref="PDB:4S0T" /db_xref="PDB:4X1F" /db_xref="PDB:4X1G" /db_xref="PDB:4XAO" /db_xref="PDB:4XHD" /db_xref="PDB:5A86" /db_xref="PDB:5X0R" /db_xref="PDB:6BNS" /db_xref="PDB:6DUP" /db_xref="UniProtKB/Swiss-Prot:O75469" /protein_id="CAB55494.1" /translation="MTCEGCKGFFRRAMKRNARLRCPFRKGACEITRKTRRQCQACRL RKCLESGMKNEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGLTEEQRMMIRELMDA QMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFK GIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLED TAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQ FAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQ ELFGITGS" BASE COUNT 1134 a 1105 c 1056 g 1042 t ORIGIN 1 ttcttaaccc tttccagctt tcccaccctc tttggcttta gccatggcct tctgatctgt 61 gtttctcagg ggacctgcag gccccagata tagccccatg ctgtcctcct accccagagc 121 acactgttca ggctacttcc actggtactg aaatccagta tttcactcac tcttttcctt 181 tccaatatcc tcatgacatt caatatttca cttactctag gtcctccctg cctaaggccc 241 aagtcaactt tctgtccagt gggatttgta atccaatgcc tcctagccct agcagaatcc 301 catgtggata atcagaaatg tgactggaaa aaggacagag ctctatggct gtgggtccca 361 gtccccactg ctggcagtaa gtccccagca gtgagctgtg taagcacctt acattctgtg 421 cttggttgaa aacagcaagg caagcatcca cttgagaaat gtcaacccct aggaaatccc 481 agcctcaagt ctttctcatc ccttgggaag tgcaaattgg atagagaaga aaccaattaa 541 aaacaaaaca aacaaatcat acttagatat tctggctttt ctcaccaggg ctggattaaa 601 gcatgtactt caaaataata acaacttaag tcaataaata aatgtaagga agtccaaatg 661 ttcacctgaa gacaactgtg gtcatttttt ggcaatccca ggttctcttt tctacctgtt 721 tgctcaatcg tggtctccct ctccctctct tgttggggcc catgcccctg ctttactgtt 781 gccagaggct tgtacttgtt tgccttttag gtaggagcag ttacttccac tcccctcacc 841 tgccataaag catctttata aacaaagcaa gtagaagaaa cacatcctgg tatccaccac 901 attcggcttt tgttgattct gttcacttgg gagcacctgc tgctagggaa taagaaggtt 961 gaggctgaag agtgaggact cttcagctcc cctctggcag gacccgggag aggaaagagc 1021 cctcagctgg tccatcctcc ccactcctgg tcagccttct gttctgagat caaagtggtg 1081 gggtcacatt ctcgagaact gtgctcagcc ccctcatctc acaccctttc cctctccctg 1141 tgtgcctgcc cccctcttac ataaccatgc tggtgattgg caccgtcata aatcaatact 1201 ttgctcactt tcacatcaag taacactatc cagggaggtg gtttcaacaa aggaggaagt 1261 ataaggagat ctaggttcaa attaatgttg cccctagtgg taaaggacag agaccctcag 1321 actgatgaaa tgcactcaga attacttaga caaagcggat atttgccact ctcttcccct 1381 tttcctgtgt ttttgtagtg aagagacctg aaagaaaaaa gtagggagaa cataatgaga 1441 acaaatacgg taatctcttc atttgctagt tcaagtgctg gacttgggac ttaggagggg 1501 caatggagcc gcttagtgcc tacatctgac ttggactgaa atataggtga gagacaagat 1561 tgtctcatat ccggggaaat cataacctat gactaggacg ggaagaggaa gcactgcctt 1621 tacttcagtg ggaatctcgg cctcagcctg caagccaagt gttcacagtg agaaaagcaa 1681 gagaataagc taatactcct gtcctgaaca aggcagcggc tccttggtaa agctactcct 1741 tgatcgatcc tttgcaccgg attgttcaaa gtggacccca ggggagaagt cggagcaaag 1801 aacttaccac caaacagtcc aagaggccca gaagcaaacc tggaggtgag acccaaagaa 1861 agctggaacc atactgactt tgtacactgt gaggacacag agtctgttcc tggaaagccc 1921 agtgtcaacg cagatgagga agtcggaggt ccccaaatct gccgtgtatg tggggacaag 1981 gccactggct atcacttcaa tgtcatgaca tgtgaaggat gcaagggctt tttcaggagg 2041 gccatgaaac gcaacgcccg gctgaggtgc cccttccgga agggcgcctg cgagatcacc 2101 cggaagaccc ggcgacagtg ccaggcctgc cgcctgcgca agtgcctgga gagcggcatg 2161 aagaatgaga tgatcatgtc cgacgaggcc gtggaggaga ggcgggcctt gatcaagcgg 2221 aagaaaagtg aacggacagg gactcagcca ctgggagtgc aggggctgac agaggagcag 2281 cggatgatga tcagggagct gatggacgct cagatgaaaa cctttgacac taccttctcc 2341 catttcaaga atttccgggt ctctctgcag ctgcgggggg aggatggcag tgtctggaac 2401 tacaaacccc cagccgacag tggcgggaaa gagatcttct ccctgctgcc ccacatggct 2461 gacatgtcaa cctacatgtt caaaggcatc atcagctttg ccaaagtcat ctcctacttc 2521 agggacttgc ctatcgagga ccagatctcc ctgctgaagg gggccgcttt cgagctgtgt 2581 caactgagat tcaacacagt gttcaacgcg gagactggaa cctgggagtg tggccggctg 2641 tcctactgct tggaagacac tgcaggtggc ttccagcaac ttctactgga gcccatgctg 2701 aaattccact acatgctgaa gaagctgcag ctgcatgagg aggagtatgt gctgatgcag 2761 gccatctccc tcttctcccc agaccgccca ggtgtgctgc agcaccgcgt ggtggaccag 2821 ctgcaggagc aattcgccat tactctgaag tcctacattg aatgcaatcg gccccagcct 2881 gctcataggt tcttgttcct gaagatcatg gctatgctca ccgagctccg cagcatcaat 2941 gctcagcaca cccagcggct gctgcgcatc caggacatac acccctttgc tacgcccctc 3001 atgcaggagt tgttcggcat cacaggtagc tgagcggctg cccttggggt gacacctccg 3061 agaggcagcc agacccagag ccctctgagc cgccactccc gggccaagac agatggacac 3121 tgccaagagc cgacaatgcc ctgctggcct gtctccctag ggaattcctg ctatgacagc 3181 tggctagcat tcctcaggaa ggacatgggt gccccccacc cccagttcag tctgtaggga 3241 gtgaagccac agactcttac gtggagagtg cactgacctg taggtcagga ccatcagaga 3301 ggcaaggttg ccctttcctt ttaaaaggcc ctgtggtctg gggagaaatc cctcagatcc 3361 cactaaagtg tcaaggtgtg gaagggacca agcgaccaag gataggccat ctggggtcta 3421 tgcccacata cccacgtttg ttcgcttcct gagtcttttc attgctacct ctaatagtcc 3481 tgtctcccac ttcccactcg ttcccctcct cttccgagct gctttgtggg ctccaggcct 3541 gtactcatcg gcaggtgcat gagtatctgt gggagtcctc tagagagatg agaagccagg 3601 aggcctgcac caaatgtcag aagcttggca tgacctcatt ccggccacat cattctgtgt 3661 ctctgcatcc atttgaacac attattaagc accgataata ggtagcctgc tgtggggtat 3721 acagcattga ctcagatata gatcctgagc tcacagagtt tatagttaaa aaaaacaaac 3781 agaaacacaa acaatttgga tcaaaaggag aaatgataag tgacaaaagc agcacaagga 3841 atttccctgt gtggatgctg agctgtgatg gcgggcactg ggtacccaag tgaaggttcc 3901 cgaggacatg agtctgtagg agcaagggca caaactgcag ctgtgagtgc gtgtgtgtga 3961 tttggtgtag gtaggtctgt ttgccacttg atggggcctg ggtttgttcc tggggctgga 4021 atgctgggta tgctctgtga caaggctacg ctgacaatca gttaaacaca ccggagaaga 4081 accatttaca tgcaccttat atttctgtgt acacatctat tctcaaagct aaagggtatg 4141 aaagtgcctg ccttgtttat agccacttgt gagtaaaaat ttttttgcat tttcacaaat 4201 tatactttat ataaggcatt ccacacctaa gaactagttt tgggaaatgt agccctgggt 4261 ttaatgtcaa atcaaggcaa aaggaattaa ataatgtact tttggctaaa aaaaaaaaaa 4321 aaaaaaaaaa aaaaaaa //