LOCUS       AJ009937                4337 bp    mRNA    linear   HUM 07-OCT-2008
DEFINITION  Homo sapiens mRNA for nuclear hormone receptor PRR2.
ACCESSION   AJ009937
VERSION     AJ009937.1
KEYWORDS    nuclear hormone receptor; orphan nuclear receptor; PRR2 gene.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4337)
  AUTHORS   Heard D.J.
  JOURNAL   Submitted (31-JUL-1998) to the INSDC. Heard D.J., Novo Nordisk A/S,
            Molecular Genetics, Novo Alle, DK-2880, Bagsvaerd, DENMARK.
REFERENCE   2
  AUTHORS   Heard D.J., Holloway J., Hansen C., Tommerup N., Aagaard L.,
            Vissing H.
  TITLE     Identification of a novel protein isoform of the human nuclear
            hormone receptor PXR/SXR and localization to chromosome 3q12.1 -
            13.3
  JOURNAL   Eur. J. Hum. Genet. 0, 0(0).
FEATURES             Location/Qualifiers
     source          1..4337
                     /db_xref="H-InvDB:HIT000244364"
                     /organism="Homo sapiens"
                     /chromosome="3"
                     /map="q12-q13.3"
                     /mol_type="mRNA"
                     /tissue_type="liver"
                     /tissue_type="intestine"
                     /tissue_type="colon"
                     /db_xref="taxon:9606"
     CDS             1771..3033
                     /transl_except=(pos:1771..1773,aa:Met)
                     /gene="PRR2"
                     /product="nuclear hormone receptor PRR2-C"
                     /note="isoform with longer A/B domain, translation
                     initiates at GUG-1771 5 fold less efficiently than at
                     CUG-1840"
                     /db_xref="GOA:O75469"
                     /db_xref="HGNC:HGNC:7968"
                     /db_xref="InterPro:IPR000536"
                     /db_xref="InterPro:IPR001628"
                     /db_xref="InterPro:IPR001723"
                     /db_xref="InterPro:IPR013088"
                     /db_xref="InterPro:IPR035500"
                     /db_xref="PDB:1ILG"
                     /db_xref="PDB:1ILH"
                     /db_xref="PDB:1M13"
                     /db_xref="PDB:1NRL"
                     /db_xref="PDB:1SKX"
                     /db_xref="PDB:2O9I"
                     /db_xref="PDB:2QNV"
                     /db_xref="PDB:3CTB"
                     /db_xref="PDB:3HVL"
                     /db_xref="PDB:3R8D"
                     /db_xref="PDB:4J5W"
                     /db_xref="PDB:4J5X"
                     /db_xref="PDB:4NY9"
                     /db_xref="PDB:4S0S"
                     /db_xref="PDB:4S0T"
                     /db_xref="PDB:4X1F"
                     /db_xref="PDB:4X1G"
                     /db_xref="PDB:4XAO"
                     /db_xref="PDB:4XHD"
                     /db_xref="PDB:5A86"
                     /db_xref="PDB:5X0R"
                     /db_xref="PDB:6BNS"
                     /db_xref="PDB:6DUP"
                     /db_xref="UniProtKB/Swiss-Prot:O75469"
                     /protein_id="CAB55493.1"
                     /translation="MDPRGEVGAKNLPPNSPRGPEANLEVRPKESWNHTDFVHCEDTE
                     SVPGKPSVNADEEVGGPQICRVCGDKATGYHFNVMTCEGCKGFFRRAMKRNARLRCPF
                     RKGACEITRKTRRQCQACRLRKCLESGMKNEMIMSDEAVEERRALIKRKKSERTGTQP
                     LGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSG
                     GKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNT
                     VFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISL
                     FSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQ
                     HTQRLLRIQDIHPFATPLMQELFGITGS"
     CDS             1840..3033
                     /gene="PRR2"
                     /product="nuclear hormone receptor PRR2-A"
                     /function="transcription factor"
                     /note="full length receptor"
                     /db_xref="GOA:O75469"
                     /db_xref="H-InvDB:HIT000244364.14"
                     /db_xref="HGNC:HGNC:7968"
                     /db_xref="InterPro:IPR000536"
                     /db_xref="InterPro:IPR001628"
                     /db_xref="InterPro:IPR001723"
                     /db_xref="InterPro:IPR013088"
                     /db_xref="InterPro:IPR035500"
                     /db_xref="PDB:1ILG"
                     /db_xref="PDB:1ILH"
                     /db_xref="PDB:1M13"
                     /db_xref="PDB:1NRL"
                     /db_xref="PDB:1SKX"
                     /db_xref="PDB:2O9I"
                     /db_xref="PDB:2QNV"
                     /db_xref="PDB:3CTB"
                     /db_xref="PDB:3HVL"
                     /db_xref="PDB:3R8D"
                     /db_xref="PDB:4J5W"
                     /db_xref="PDB:4J5X"
                     /db_xref="PDB:4NY9"
                     /db_xref="PDB:4S0S"
                     /db_xref="PDB:4S0T"
                     /db_xref="PDB:4X1F"
                     /db_xref="PDB:4X1G"
                     /db_xref="PDB:4XAO"
                     /db_xref="PDB:4XHD"
                     /db_xref="PDB:5A86"
                     /db_xref="PDB:5X0R"
                     /db_xref="PDB:6BNS"
                     /db_xref="PDB:6DUP"
                     /db_xref="UniProtKB/Swiss-Prot:O75469"
                     /protein_id="CAB55492.1"
                     /translation="MEVRPKESWNHTDFVHCEDTESVPGKPSVNADEEVGGPQICRVC
                     GDKATGYHFNVMTCEGCKGFFRRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKC
                     LESGMKNEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMK
                     TFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFKGII
                     SFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLEDTAG
                     GFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAI
                     TLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELF
                     GITGS"
     CDS             2005..3033
                     /gene="PRR2"
                     /product="nuclear hormone receptor PRR2-B"
                     /note="truncated receptor"
                     /db_xref="GOA:O75469"
                     /db_xref="HGNC:HGNC:7968"
                     /db_xref="InterPro:IPR000536"
                     /db_xref="InterPro:IPR001628"
                     /db_xref="InterPro:IPR001723"
                     /db_xref="InterPro:IPR013088"
                     /db_xref="InterPro:IPR035500"
                     /db_xref="PDB:1ILG"
                     /db_xref="PDB:1ILH"
                     /db_xref="PDB:1M13"
                     /db_xref="PDB:1NRL"
                     /db_xref="PDB:1SKX"
                     /db_xref="PDB:2O9I"
                     /db_xref="PDB:2QNV"
                     /db_xref="PDB:3CTB"
                     /db_xref="PDB:3HVL"
                     /db_xref="PDB:3R8D"
                     /db_xref="PDB:4J5W"
                     /db_xref="PDB:4J5X"
                     /db_xref="PDB:4NY9"
                     /db_xref="PDB:4S0S"
                     /db_xref="PDB:4S0T"
                     /db_xref="PDB:4X1F"
                     /db_xref="PDB:4X1G"
                     /db_xref="PDB:4XAO"
                     /db_xref="PDB:4XHD"
                     /db_xref="PDB:5A86"
                     /db_xref="PDB:5X0R"
                     /db_xref="PDB:6BNS"
                     /db_xref="PDB:6DUP"
                     /db_xref="UniProtKB/Swiss-Prot:O75469"
                     /protein_id="CAB55494.1"
                     /translation="MTCEGCKGFFRRAMKRNARLRCPFRKGACEITRKTRRQCQACRL
                     RKCLESGMKNEMIMSDEAVEERRALIKRKKSERTGTQPLGVQGLTEEQRMMIRELMDA
                     QMKTFDTTFSHFKNFRVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMADMSTYMFK
                     GIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLSYCLED
                     TAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQ
                     FAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQ
                     ELFGITGS"
BASE COUNT         1134 a         1105 c         1056 g         1042 t
ORIGIN      
        1 ttcttaaccc tttccagctt tcccaccctc tttggcttta gccatggcct tctgatctgt
       61 gtttctcagg ggacctgcag gccccagata tagccccatg ctgtcctcct accccagagc
      121 acactgttca ggctacttcc actggtactg aaatccagta tttcactcac tcttttcctt
      181 tccaatatcc tcatgacatt caatatttca cttactctag gtcctccctg cctaaggccc
      241 aagtcaactt tctgtccagt gggatttgta atccaatgcc tcctagccct agcagaatcc
      301 catgtggata atcagaaatg tgactggaaa aaggacagag ctctatggct gtgggtccca
      361 gtccccactg ctggcagtaa gtccccagca gtgagctgtg taagcacctt acattctgtg
      421 cttggttgaa aacagcaagg caagcatcca cttgagaaat gtcaacccct aggaaatccc
      481 agcctcaagt ctttctcatc ccttgggaag tgcaaattgg atagagaaga aaccaattaa
      541 aaacaaaaca aacaaatcat acttagatat tctggctttt ctcaccaggg ctggattaaa
      601 gcatgtactt caaaataata acaacttaag tcaataaata aatgtaagga agtccaaatg
      661 ttcacctgaa gacaactgtg gtcatttttt ggcaatccca ggttctcttt tctacctgtt
      721 tgctcaatcg tggtctccct ctccctctct tgttggggcc catgcccctg ctttactgtt
      781 gccagaggct tgtacttgtt tgccttttag gtaggagcag ttacttccac tcccctcacc
      841 tgccataaag catctttata aacaaagcaa gtagaagaaa cacatcctgg tatccaccac
      901 attcggcttt tgttgattct gttcacttgg gagcacctgc tgctagggaa taagaaggtt
      961 gaggctgaag agtgaggact cttcagctcc cctctggcag gacccgggag aggaaagagc
     1021 cctcagctgg tccatcctcc ccactcctgg tcagccttct gttctgagat caaagtggtg
     1081 gggtcacatt ctcgagaact gtgctcagcc ccctcatctc acaccctttc cctctccctg
     1141 tgtgcctgcc cccctcttac ataaccatgc tggtgattgg caccgtcata aatcaatact
     1201 ttgctcactt tcacatcaag taacactatc cagggaggtg gtttcaacaa aggaggaagt
     1261 ataaggagat ctaggttcaa attaatgttg cccctagtgg taaaggacag agaccctcag
     1321 actgatgaaa tgcactcaga attacttaga caaagcggat atttgccact ctcttcccct
     1381 tttcctgtgt ttttgtagtg aagagacctg aaagaaaaaa gtagggagaa cataatgaga
     1441 acaaatacgg taatctcttc atttgctagt tcaagtgctg gacttgggac ttaggagggg
     1501 caatggagcc gcttagtgcc tacatctgac ttggactgaa atataggtga gagacaagat
     1561 tgtctcatat ccggggaaat cataacctat gactaggacg ggaagaggaa gcactgcctt
     1621 tacttcagtg ggaatctcgg cctcagcctg caagccaagt gttcacagtg agaaaagcaa
     1681 gagaataagc taatactcct gtcctgaaca aggcagcggc tccttggtaa agctactcct
     1741 tgatcgatcc tttgcaccgg attgttcaaa gtggacccca ggggagaagt cggagcaaag
     1801 aacttaccac caaacagtcc aagaggccca gaagcaaacc tggaggtgag acccaaagaa
     1861 agctggaacc atactgactt tgtacactgt gaggacacag agtctgttcc tggaaagccc
     1921 agtgtcaacg cagatgagga agtcggaggt ccccaaatct gccgtgtatg tggggacaag
     1981 gccactggct atcacttcaa tgtcatgaca tgtgaaggat gcaagggctt tttcaggagg
     2041 gccatgaaac gcaacgcccg gctgaggtgc cccttccgga agggcgcctg cgagatcacc
     2101 cggaagaccc ggcgacagtg ccaggcctgc cgcctgcgca agtgcctgga gagcggcatg
     2161 aagaatgaga tgatcatgtc cgacgaggcc gtggaggaga ggcgggcctt gatcaagcgg
     2221 aagaaaagtg aacggacagg gactcagcca ctgggagtgc aggggctgac agaggagcag
     2281 cggatgatga tcagggagct gatggacgct cagatgaaaa cctttgacac taccttctcc
     2341 catttcaaga atttccgggt ctctctgcag ctgcgggggg aggatggcag tgtctggaac
     2401 tacaaacccc cagccgacag tggcgggaaa gagatcttct ccctgctgcc ccacatggct
     2461 gacatgtcaa cctacatgtt caaaggcatc atcagctttg ccaaagtcat ctcctacttc
     2521 agggacttgc ctatcgagga ccagatctcc ctgctgaagg gggccgcttt cgagctgtgt
     2581 caactgagat tcaacacagt gttcaacgcg gagactggaa cctgggagtg tggccggctg
     2641 tcctactgct tggaagacac tgcaggtggc ttccagcaac ttctactgga gcccatgctg
     2701 aaattccact acatgctgaa gaagctgcag ctgcatgagg aggagtatgt gctgatgcag
     2761 gccatctccc tcttctcccc agaccgccca ggtgtgctgc agcaccgcgt ggtggaccag
     2821 ctgcaggagc aattcgccat tactctgaag tcctacattg aatgcaatcg gccccagcct
     2881 gctcataggt tcttgttcct gaagatcatg gctatgctca ccgagctccg cagcatcaat
     2941 gctcagcaca cccagcggct gctgcgcatc caggacatac acccctttgc tacgcccctc
     3001 atgcaggagt tgttcggcat cacaggtagc tgagcggctg cccttggggt gacacctccg
     3061 agaggcagcc agacccagag ccctctgagc cgccactccc gggccaagac agatggacac
     3121 tgccaagagc cgacaatgcc ctgctggcct gtctccctag ggaattcctg ctatgacagc
     3181 tggctagcat tcctcaggaa ggacatgggt gccccccacc cccagttcag tctgtaggga
     3241 gtgaagccac agactcttac gtggagagtg cactgacctg taggtcagga ccatcagaga
     3301 ggcaaggttg ccctttcctt ttaaaaggcc ctgtggtctg gggagaaatc cctcagatcc
     3361 cactaaagtg tcaaggtgtg gaagggacca agcgaccaag gataggccat ctggggtcta
     3421 tgcccacata cccacgtttg ttcgcttcct gagtcttttc attgctacct ctaatagtcc
     3481 tgtctcccac ttcccactcg ttcccctcct cttccgagct gctttgtggg ctccaggcct
     3541 gtactcatcg gcaggtgcat gagtatctgt gggagtcctc tagagagatg agaagccagg
     3601 aggcctgcac caaatgtcag aagcttggca tgacctcatt ccggccacat cattctgtgt
     3661 ctctgcatcc atttgaacac attattaagc accgataata ggtagcctgc tgtggggtat
     3721 acagcattga ctcagatata gatcctgagc tcacagagtt tatagttaaa aaaaacaaac
     3781 agaaacacaa acaatttgga tcaaaaggag aaatgataag tgacaaaagc agcacaagga
     3841 atttccctgt gtggatgctg agctgtgatg gcgggcactg ggtacccaag tgaaggttcc
     3901 cgaggacatg agtctgtagg agcaagggca caaactgcag ctgtgagtgc gtgtgtgtga
     3961 tttggtgtag gtaggtctgt ttgccacttg atggggcctg ggtttgttcc tggggctgga
     4021 atgctgggta tgctctgtga caaggctacg ctgacaatca gttaaacaca ccggagaaga
     4081 accatttaca tgcaccttat atttctgtgt acacatctat tctcaaagct aaagggtatg
     4141 aaagtgcctg ccttgtttat agccacttgt gagtaaaaat ttttttgcat tttcacaaat
     4201 tatactttat ataaggcatt ccacacctaa gaactagttt tgggaaatgt agccctgggt
     4261 ttaatgtcaa atcaaggcaa aaggaattaa ataatgtact tttggctaaa aaaaaaaaaa
     4321 aaaaaaaaaa aaaaaaa
//