LOCUS AF548371 1730 bp mRNA linear HUM 20-DEC-2005
DEFINITION Homo sapiens basigin long isoform (BSG) mRNA, complete cds;
alternatively spliced.
ACCESSION AF548371
VERSION AF548371.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1730)
AUTHORS Ochrietor,J.D., Moroz,T.P., van Ekeris,L., Clamp,M.F.,
Jefferson,S.C., deCarvalho,A.C., Fadool,J.M., Wistow,G.,
Muramatsu,T. and Linser,P.J.
TITLE Retina-specific expression of 5A11/Basigin-2, a member of the
immunoglobulin gene superfamily
JOURNAL Invest. Ophthalmol. Vis. Sci. 44 (9), 4086-4096 (2003)
PUBMED 12939332
REFERENCE 2 (bases 1 to 1730)
AUTHORS Ochrietor,J.D., Moroz,T.P., van Ekeris,L., Clamp,M.F.,
Jefferson,S.C., deCarvalho,A.C., Fadool,J.M., Wistow,G.J.,
Muramatsu,T. and Linser,P.J.
TITLE A novel retina specific variant of Basigin
JOURNAL Unpublished
REFERENCE 3 (bases 1 to 1730)
AUTHORS Wistow,G.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2002) MSF, NEI, 6/331, NIH, Bethesda, MD 20892,
USA
FEATURES Location/Qualifiers
source 1..1730
/db_xref="H-InvDB:HIT000081513"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="19"
/map="19p13.3"
/tissue_type="retina"
gene 1..1730
/gene="BSG"
CDS 61..1218
/gene="BSG"
/note="retinal glycoprotein; retina-specific isoform;
contains additional immunoglobulin like domain;
alternatively spliced"
/codon_start=1
/product="basigin long isoform"
/protein_id="AAN40694.1"
/translation="MAAALFVLLGFALLGTHGASGAAGFVQAPLSQQRWVGGSVELHC
EAVGSPVPEIQWWFEGQGPNDTCSQLWDGARLDRVHIHATYHQHAASTISIDTLVEED
TGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVLEPGTVFTTVEDLGSKILLTCSLN
DSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLH
GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV
SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRSHLAALWPFLGIVAE
VLVLVTIIFIYEKRRKPEDVLDDDDAGSAPLKSSGQHQNDKGKNVRQRNSS"
BASE COUNT 323 a 551 c 530 g 326 t
ORIGIN
1 gcggccgcgg gcggcggcgg cagcggttgg aggttgtagg accggcgagg aataggaatc
61 atggcggctg cgctgttcgt gctgctggga ttcgcgctgc tgggcaccca cggagcctcc
121 ggggctgccg gcttcgtcca ggcgccgctg tcccagcaga ggtgggtggg gggcagtgtg
181 gagctgcact gcgaggccgt gggcagcccg gtgcccgaga tccagtggtg gtttgaaggg
241 cagggtccca acgacacctg ctcccagctc tgggacggcg cccggctgga ccgcgtccac
301 atccacgcca cctaccacca gcacgcggcc agcaccatct ccatcgacac gctcgtggag
361 gaggacacgg gcacttacga gtgccgggcc agcaacgacc cggatcgcaa ccacctgacc
421 cgggcgccca gggtcaagtg ggtccgcgcc caggcagtcg tgctagtcct ggaacccggc
481 acagtcttca ctaccgtaga agaccttggc tccaagatac tcctcacctg ctccttgaat
541 gacagcgcca cagaggtcac agggcaccgc tggctgaagg ggggcgtggt gctgaaggag
601 gacgcgctgc ccggccagaa aacggagttc aaggtggact ccgacgacca gtggggagag
661 tactcctgcg tcttcctccc cgagcccatg ggcacggcca acatccagct ccacgggcct
721 cccagagtga aggccgtgaa gtcgtcagaa cacatcaacg agggggagac ggccatgctg
781 gtctgcaagt cagagtccgt gccacctgtc actgactggg cctggtacaa gatcactgac
841 tctgaggaca aggccctcat gaacggctcc gagagcaggt tcttcgtgag ttcctcgcag
901 ggccggtcag agctacacat tgagaacctg aacatggagg ccgaccccgg ccagtaccgg
961 tgcaacggca ccagctccaa gggctccgac caggccatca tcacgctccg cgtgcgcagc
1021 cacctggccg ccctctggcc cttcctgggc atcgtggctg aggtgctggt gctggtcacc
1081 atcatcttca tctacgagaa gcgccggaag cccgaggacg tcctggatga tgacgacgcc
1141 ggctctgcac ccctgaagag cagcgggcag caccagaatg acaaaggcaa gaacgtccgc
1201 cagaggaact cttcctgagg caggtggccc gaggacgctc cctgctccac gtctgcgccg
1261 ccgccggagt ccactcccag tgcttgcaag attccaagtt ctcacctctt aaagaaaacc
1321 caccccgtag attcccatca tacacttcct tcttttttaa aaaagttggg ttttctccat
1381 tcaggattct gttccttagg attttttcct tctgaagtgt ttcacgagag cccgggagct
1441 gctgccctgc ggccccgtct gtggctttca gcctctgggt ctgagtcatg gccgggtggg
1501 cggcacagcc ttctccactg gccggagtca gtgccaggtc cttgcccttt gtggaaagtc
1561 acaggtcaca cgaggggccc cgtgtcctgc ctgtctgaag ccaatgctgt ctggttgcgc
1621 catttttgtg cttttatgtt taattttatg agggccacgg gtctgtgttc gactcagcct
1681 cagggacgac tctgacctct tggccacaga ggactcactt gcccacaccg
//