LOCUS AF540970 2158 bp mRNA linear HUM 12-OCT-2011
DEFINITION Homo sapiens transglutaminase y short form (TGM6) mRNA, complete
cds; alternatively spliced.
ACCESSION AF540970
VERSION AF540970.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2158)
AUTHORS Thomas,H., Beck,K., Adamczyk,M., Aeschlimann,P., Langley,M.,
Oita,R.C., Thiebach,L., Hils,M. and Aeschlimann,D.
TITLE Transglutaminase 6: a protein associated with central nervous
system development and motor function
JOURNAL Amino Acids (2011) In press
PUBMED 21984379
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 2158)
AUTHORS Thomas,H. and Aeschlimann,D.
TITLE Direct Submission
JOURNAL Submitted (09-AUG-2002) Matrix Biology & Tissue Repair Research
Unit, Dental School, University of Wales College of Medicine, Heath
Park, Cardiff CF14 4XY, United Kingdom
FEATURES Location/Qualifiers
source 1..2158
/db_xref="H-InvDB:HIT000243769"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="20"
/map="20q11"
/cell_line="H69"
/cell_type="small cell carcinoma"
/tissue_type="lung"
gene 1..2158
/gene="TGM6"
CDS 62..1939
/gene="TGM6"
/EC_number="2.3.2.13"
/note="transglutaminase type 6 (d12), TGy(d12), TG6(d12);
catalyzes R-glutaminyl-peptide, amine-gamma-glutamyl
transferase reaction; alternatively spliced; lacks
sequence from exon 12 encoding for the second beta-barrel
domain"
/codon_start=1
/product="transglutaminase y short form"
/protein_id="AAQ10752.1"
/translation="MAGIRVTKVDWQRSRNGAAHHTQEYPCPELVVRRGQSFSLTLEL
SRALDCEEILIFTVETGPRASEALHTKAVFQTSELERGEGWTAAREAQMEKTLTVSLA
SPPSAVIGRYLLSIRLSSHRKHSNRRLGEFVLLFNPWCAEDDVFLASEEERQEYVLSD
SGIIFRGVEKHIRAQGWNYGQFEEDILNICLSILDRSPGHQNNPATDVSCRHNPIYVT
RVISAMVNSNNDRGVVQGQWQGKYGGGTSPLHWRGSVAILQKWLKGRYKPVKYGQCWV
FAGVLCTVLRCLGIATRVVSNFNSAHDTDQNLSVDKYVDSFGRTLEDLTEDSMWNFHV
WNESWFARQDLGPSYNGWQVLDATPQEESEGVFRCGPASVTAIREGDVHLAHDGPFVF
AEVNADYITWLWHEDESRERVYSNTKKIGRCISTKAVGSDSRVDITDLYKYPEGSRKE
RQVYSKAVNRLFGVEASGRRIWIRRAGGRCLWRDDLLEPATKPSIAGKFKVLEPPMLG
HDLRLALCLANLTSRAQRVRVNLSGATILYTRKPVAEILHESHAVRLGPQEEKRIPIT
ISYSKYKEDLTEDKKILLAAMCLVTKGEKLLVEKDITLEDFITIKRAYPGASGEGLSP
V"
BASE COUNT 480 a 626 c 655 g 397 t
ORIGIN
1 actgtcctga cggtgcacac actgctgtgt ggaggaacag aggagtccag ctggccttca
61 catggcaggg atcagagtca ccaaggtgga ctggcagcgg tcgaggaatg gcgctgccca
121 ccacacccag gagtacccct gccctgagct ggtggttcgc aggggccagt cgttcagcct
181 cacgctggag ctgagcagag ccctggactg tgaggagatc ctcatcttca cggtggagac
241 aggaccccgg gcttctgagg ccctccacac caaagctgtg ttccagacat cggagctgga
301 gcggggtgag ggctggacag cagcaaggga ggctcagatg gagaaaactc tgaccgtcag
361 tctcgccagc cctcccagtg ctgtcattgg ccgctacctg ctgagcatca ggctttcctc
421 tcaccgcaaa cacagcaacc ggaggctggg cgagtttgtt ctccttttca acccatggtg
481 tgcagaggac gatgtgtttc tggcctcaga ggaggagaga caggagtacg tgctcagcga
541 cagcggcatc atcttccgag gcgtggagaa gcacatacga gcccagggct ggaactacgg
601 gcagtttgag gaggacatcc tgaacatctg cctctccatc ctggatcgaa gccccggtca
661 ccaaaacaac ccagccaccg acgtgtcctg ccgccacaac cccatctacg tcaccagggt
721 catcagtgcc atggtgaaca gcaacaacga ccgaggtgtg gtgcaaggac agtggcaggg
781 caagtacggc ggcggcacca gcccgctgca ctggcgcggc agcgtggcca ttctgcagaa
841 gtggctcaag ggcaggtaca agccagtcaa gtacggccag tgctgggtct tcgccggagt
901 cctgtgcaca gtcctcaggt gcttggggat agccacacgg gtcgtgtcca acttcaactc
961 agcccacgac acagaccaga acctgagtgt ggacaaatac gtggactcct tcgggcggac
1021 cctggaggac ctgacagaag acagcatgtg gaatttccat gtctggaatg agagctggtt
1081 tgcccggcag gacctaggcc cctcttacaa tggctggcag gttctggatg ccacccccca
1141 ggaggagagt gaaggtgtgt tccggtgcgg cccagcctca gtcaccgcca tccgcgaggg
1201 tgatgtgcac ctggctcacg atggcccctt cgtgtttgcg gaggtcaacg ccgactacat
1261 cacctggctg tggcacgagg atgagagccg ggagcgtgta tactcaaaca cgaagaagat
1321 tgggagatgc atcagcacca aggcggtggg cagtgactcc cgcgtggaca tcactgacct
1381 ctacaagtat ccggaagggt cccggaaaga gaggcaggtg tacagcaagg cggtgaacag
1441 gctgttcggc gtggaagcct ctggaaggag aatctggatc cgcagggctg ggggtcgctg
1501 tctctggcgt gacgacctcc tggagcctgc caccaagccc agcatcgctg gcaagttcaa
1561 ggtgctagag cctcccatgc tgggccacga cctgagactg gccctgtgct tggccaacct
1621 cacctcccgg gcccagcggg tgagggtcaa cctgagcggt gccaccatcc tctatacccg
1681 caagccagtg gcagagatcc tgcatgaatc ccacgccgtg aggctggggc cgcaagaaga
1741 gaagagaatc ccaattacaa tatcttactc taagtataaa gaagacctga cagaggacaa
1801 gaagatcctg ttggctgcca tgtgccttgt caccaaagga gagaagcttc tggtggagaa
1861 ggacattact ctagaggact tcatcaccat caagcgtgcc taccctggag cctcaggaga
1921 gggcctcagt ccagtttgac atcaccccct ccaaaagtgg cccaaggcag ctgcaggtgg
1981 accttgtaag ccctcacttc ccggacatca agggctttgt gatcgtccat gtggccactg
2041 ccaagtgatg gatcatgagg gactgagagg ggtggatttg gcccctgtcc tcctcctgcc
2101 cattctttgt ctcttccaca tgggagccag gaggcctcag ttaatcctgc ctcaacct
//