LOCUS AF530580 3071 bp mRNA linear HUM 03-SEP-2002
DEFINITION Homo sapiens non-neuronal splice variant nPTB3 (PTBP2) mRNA,
complete cds; alternatively spliced.
ACCESSION AF530580
VERSION AF530580.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3071)
AUTHORS Rahman,L., Bliskovski,V., Reinhold,W. and Zajac-Kaye,M.
TITLE Alternative splicing of brain-specific PTB defines a
tissue-specific isoform pattern that predicts distinct functional
roles
JOURNAL Genomics 80 (3), 245-249 (2002)
PUBMED 12213192
REFERENCE 2 (bases 1 to 3071)
AUTHORS Zajac-Kaye,M.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2002) Basic Research Laboratory, NCI, NIH, 37
Convent Drive, Bldg. 37 R6050C, Bethesda, MD 20892, USA
FEATURES Location/Qualifiers
source 1..3071
/db_xref="H-InvDB:HIT000081299"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="1"
/cell_type="HeLa"
gene 1..3071
/gene="PTBP2"
/note="nPTB3"
CDS 56..1669
/gene="PTBP2"
/note="splicing regulator; alternatively spliced"
/codon_start=1
/product="non-neuronal splice variant nPTB3"
/protein_id="AAM94624.1"
/translation="MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDS
KKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELA
TEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTAN
TPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQ
FQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPD
LPSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGM
PGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQ
SQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSK
NFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVE
EAIQALIDLHNYNLGENHHLRVSFSKSTI"
exon 344..487
/gene="PTBP2"
/number=5
exon 488..652
/gene="PTBP2"
/number=6
exon 653..763
/gene="PTBP2"
/number=7
exon 764..959
/gene="PTBP2"
/number=8
exon 960..1114
/gene="PTBP2"
/number=9
exon 1115..1148
/gene="PTBP2"
/number=10
exon 1149..1241
/gene="PTBP2"
/number=11
exon 1242..1458
/gene="PTBP2"
/number=12
exon 1459..1536
/gene="PTBP2"
/number=13
exon 1536..3057
/gene="PTBP2"
/number=14
BASE COUNT 920 a 524 c 611 g 1016 t
ORIGIN
1 ggctcgctgg ctgcgtggct cggttcttgt gagcgaagct ttgtccggtt cggcaatgga
61 cggaatcgtc actgaggttg cagttggcgt gaagagagga tctgacgaac tactctcagg
121 cagtgttctc agtagtccga actctaatat gagcagcatg gtagttacag ccaatggtaa
181 tgatagtaaa aaatttaaag gagaagataa aatggatggt gctccttctc gtgtacttca
241 tattcgaaaa ttacctgggg aagtaacaga aactgaagtt attgctttag gcttaccttt
301 tggtaaggtg accaacatcc ttatgctgaa aggaaaaaat caggcatttt tggaactagc
361 aaccgaggaa gcagctatta ctatggttaa ttactattct gctgtgacac ctcatcttcg
421 taaccaacca atatatatcc agtactcgaa tcacaaagaa ctaaagacag ataatacatt
481 aaaccaacgt gctcaggcag ttcttcaagc tgtgacagct gtccagacag caaatactcc
541 tcttagtggc accacagtta gcgagagtgc agtgactcca gcccagagtc cagtacttag
601 aataattatt gacaacatgt actaccctgt aacacttgat gttcttcacc aaatattttc
661 taagtttggt gctgtattga agataatcac atttacaaaa aataaccagt ttcaagcttt
721 gctccagtat ggtgatccag taaatgctca acaagcaaaa ctagccctag atggtcagaa
781 tatttataat gcctgctgta ccctaaggat tgatttttcc aaacttgtga atttgaatgt
841 aaaatacaac aatgataaaa gtagggatta tactcgacct gatcttccat ctggggatgg
901 acaacctgca ttggacccag ctattgctgc agcatttgcc aaggagacat ccctcttagg
961 gcttcctgtt gcagctgttc caggagctct gagtcctttg gccattccaa atgctgctgc
1021 agcagctgct gcagctgctg ctggccgagt gggtatgcct ggagtctcag ctggtggcaa
1081 tacagtcctg ttggttagca atttaaatga agagatggtt acgccccaaa gtctgtttac
1141 cctcttcggt gtttatggag atgtgcagcg tgtgaagatt ttgtacaata agaaagacag
1201 cgctctaata cagatggctg atggaaacca atcacaactt gccatgaatc atcttaatgg
1261 acagaaaatg tatggaaaaa ttattcgtgt tactctgtct aaacatcaga ctgtacagct
1321 acctcgagag ggacttgatg atcaagggct aacaaaagat tttggtaatt ccccattgca
1381 tcgttttaag aaacctggat ccaaaaattt tcaaaacatt tttcctcctt ctgccaccct
1441 tcacctatct aatatccctc catcagtagc agaagaggat ctacgaacac tgttcgctaa
1501 cactgggggc actgtgaaag catttaagtt ttttcaaaga gatcacaaaa tggctcttct
1561 tcagatggca acagtggaag aagctattca ggccttgatt gatcttcata attataacct
1621 tggagaaaac catcatctga gagtgtcttt ctccaagtca acaatttaaa aatgggaaga
1681 tgaagattgg gggtgaatca cattgttcaa tgtcatcacc tatttgactg ttcagaaaag
1741 tggggaccag agtttgattt tttttgtttt tgtttttttg gggtttcttt ttttttttcc
1801 atgctgttat cattccttgg ttataaaatg aaatggcata tgtaaaggca gagttgttaa
1861 ctgctatatt tcatctgttc tatagggaag ccattttgtc tgtttaaaat ttcagtttaa
1921 ttttgctttt tttttttttt ttttttcctt tcaacttagt tgacatacgt gccttaaaaa
1981 ggaaaactag tgttgctatt gtgcatttac tagaaaaaag gaattggttg tttagggcac
2041 actgttatat gggaattaaa atatgtttag gcaggggtgt gtaaaaaggt taagtttttg
2101 tttctcctgc ttggaactta ttttgaatta ctggcttgtc accttttttt ctatttaatc
2161 aaataagata catgatattg aaagaataaa gcagcatttt tagtttttac taccttaggc
2221 tttattgctt tgaaaacaac attggccttt tgtatctcac aattctggtc tagattcagt
2281 tatgaatgta ggcattagtt aaaattaaca agatgcagag tattaatttc ttaagacaac
2341 aaagtgattt ctgtaagttt gagccctatg tggaaagcat tgtggaatct taaccttttt
2401 gtacacactc ttgtgggacg tatcatataa atgtcagcac taagtaatgt cttgtttgtg
2461 gctgaatatt tttcgtagat gtttttgaag ttgacatgac ttacgtgcat ttaaatatat
2521 attgccatcc ttagtttgta attaagattt ggaatatggt tgtggatttc tgagcatgtg
2581 cagactggtc tagctagttc aggaactggt gcatgtattt ttcaaagata aagaaagtgt
2641 actgcgaaaa tatgcaggaa gattaatttt gtggcagttt tctaaaactg acaaccaggt
2701 gggaccaaag tttatgtgcc tttagtctta atttaccttg cattgtaata ttcagtttta
2761 ataaatcttc aaaatatttt gtatttagga atagatctga ctttaataaa aacatggctc
2821 agaatctaca ggtcaaatta atttgaacag ttcttgtcaa tccgaattgt tgattctgtt
2881 taaatgacca atactttttg aaattgatgt acttagtttc aagattcata gattctgtta
2941 tctatgtaga cagaatggtc atgtatattt tctattagtt gagtttttac atctttagaa
3001 atgtaaaatt cagtatagtt tgaaagcggc acaattaaaa attaattttc taacaaaaaa
3061 aaaaaaaaaa a
//