LOCUS AF333769 5119 bp mRNA linear HUM 04-OCT-2002
DEFINITION Homo sapiens cell recognition molecule CASPR3 mRNA, complete cds.
ACCESSION AF333769
VERSION AF333769.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5119)
AUTHORS Spiegel,I., Salomon,D., Erne,B., Schaeren-Wiemers,N. and Peles,E.
TITLE Caspr3 and caspr4, two novel members of the caspr family are
expressed in the nervous system and interact with PDZ domains
JOURNAL Mol. Cell. Neurosci. 20 (2), 283-297 (2002)
PUBMED 12093160
REFERENCE 2 (bases 1 to 5119)
AUTHORS Spiegel,I. and Peles,E.
TITLE Direct Submission
JOURNAL Submitted (05-JAN-2001) Molecular Cell Biology, Weizmann Institute
of Science, POB 26, Rehovot 76100, Israel
REFERENCE 3 (bases 1 to 5119)
AUTHORS Spiegel,I. and Peles,E.
TITLE Direct Submission
JOURNAL Submitted (28-DEC-2001) Molecular Cell Biology, Weizmann Institute
of Science, POB 26, Rehovot 76100, Israel
REMARK Sequence update by submitter
COMMENT On Dec 28, 2001 this sequence version replaced AF333769.1.
FEATURES Location/Qualifiers
source 1..5119
/db_xref="H-InvDB:HIT000077782"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="9"
/map="9q11"
/tissue_type="brain"
CDS 108..3974
/codon_start=1
/product="cell recognition molecule CASPR3"
/protein_id="AAG52889.2"
/translation="MASVAWAVLKVLLLLPTQTWRPVGAGNPPDCDSPLASALPRSSF
SSSSELSSSHGPGFSRLNRRDGAGGWTPLVSNKYQWLQIDLGERIEVTAVATQGGYGS
SDWVTSYLLMFSDGGRNWKQYRREESIWGFPGNTNADSVVHYRLQPPFEARFLRFLPL
AWNPRGRIGMRIEVYGCAYKSEVVYFDGQSALLYRLDKKPLKPIRDVISLKFKAMQSN
GILLHREGQHGNHITLELIKGKLVFFLNSGNAKLPSTIAPVTLTLGSLLDDQHWHSVL
IELLDTQVNFTVDKHTHHFQAKGDSSYLDLNFEISFGGIPTPGRSRAFRRKSFHGCLE
NLYYNGVDVTELAKKHKPQILMMGNVSFSCPQPQTVPVTFLSSRSYLALPGNSGEDKV
SVTFQFRTWNRAGHLLFGELRRGSGSFVLFLKDGKLKLSLFQPGQSPRNVTAGAGLND
GQWHSVSFSAKWSHMNVVVDDDTAVQPLVAVLIDSGDTYYFGGCLDNSSGSGCKSPLG
GFQGCLRLITIGDKAVDPILVQQGALGSFRDLQIDSCGITDRCLPSYCEHGGECSQSW
DTFSCDCLGTGYTGETCHSSLYEQSCEAHKHRGNPSGLYYIDADGSGPLGPFLVYCNM
TADAAWTVVQHGGPDAVTLRGAPSGHPRSAVSFAYAAGAGQLRSAVNLAERCEQRLAL
RCGTARRPDSRDGTPLSWWVGRTNETHTYWGGSLPDAQKCTCGLEGNCIDSQYYCNCD
AGRNEWTSDTIVLSQKEHLPVTQIVMTDTGQPHSEADYTLGPLLCRGDQSFWNSASFN
TETSYLHFPAFHGELTADVCFFFKTTVSSGVFMENLGITDFIRIELRAPTEVTFSFDV
GNGPCEVTVQSPTPFNDNQWHHVRAERNVKGASLQVDQLPQKMQPAPADGHVRLQLNS
QLFIGGTATRQRGFLGCIRSLQLNGVALDLEERATVTPGVEPGCAGHCSTYGHLCRNG
GRCREKRRGVTCDCAFSAYDGPFCSNEISAYFATGSSMTYHFQEHYTLSENSSSLVSS
LHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNP
DAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSTKKQVILSSGTEFNAVKSLILGKV
LEAAGADPDTRRAATSGFTGCLSAVRFGRAAPLKAALRPSGPSRVTVRGHVAPMARCA
AGAASGSPARELAPRLAGGAGRSGPADEGEPLVNADRRDSAVIGGVIAVVIFILLCIT
AIAIRIYQQRKLRKENESKVSKKEEC"
BASE COUNT 1283 a 1222 c 1298 g 1316 t
ORIGIN
1 ggcacgaggc cgcgcagggg acgggagtga gagcgggagt gagagcagga acgacgcaga
61 gcggccgtcg ccgtgcccgg gtctcagggc gcctggctga agtgagcatg gcttcagtgg
121 cctgggccgt cctcaaggtg ctgctgcttc tccccactca gacttggaga cccgtaggag
181 caggaaatcc acctgactgt gattccccac tggcctctgc cttgcctagg tcatccttca
241 gcagctcctc agagctgtcc agcagccacg gcccggggtt ttcaaggctt aatcgaagag
301 atggagctgg tggctggacc ccacttgtgt caaataaata ccaatggctg caaattgacc
361 ttggagagag aatagaggtc actgctgtcg ccacccaagg aggatatggg agctctgact
421 gggtgaccag ctacctcctg atgttcagtg atggtgggag aaactggaag cagtatcgcc
481 gagaagaaag catctggggt tttccaggaa acacaaacgc agacagtgtg gtgcactaca
541 gactccagcc tccctttgaa gccaggttcc tgcgctttct ccctttagcc tggaacccta
601 ggggcaggat tgggatgcgg atcgaagtgt acggatgtgc atataaatct gaggtggttt
661 attttgatgg acaaagtgct ctgctgtata gacttgataa aaaaccttta aaaccaataa
721 gagacgttat ttctttgaaa tttaaagcca tgcagagcaa tggaattcta cttcacagag
781 aaggacaaca tggaaatcac attactctgg aattaattaa aggaaagctt gtcttttttc
841 ttaattcagg caatgctaag ctgccttcca ctattgctcc tgtgaccctc accctgggca
901 gcctgctgga cgaccagcac tggcattccg tcctcatcga gctcctcgac acgcaggtca
961 acttcaccgt ggacaaacac actcatcatt tccaagcaaa gggagattcc agttacttgg
1021 atcttaattt tgagatcagc tttgggggaa ttccgacacc cggaagatcg cgggcattca
1081 gacgtaaaag ctttcatggg tgtttagaaa atctttatta taatggagtg gatgttaccg
1141 aattagccaa gaaacacaaa ccacagatcc tcatgatggg aaatgtgtcc ttctcatgtc
1201 cacagccaca gactgtccct gtgacttttc tgagctccag gagttatctg gctctgccag
1261 gcaactctgg ggaggacaaa gtgtctgtca cttttcaatt tcgaacgtgg aacagagcag
1321 gacatttgct tttcggcgaa cttcgacgtg gttcagggag tttcgtcctc tttcttaagg
1381 atggcaagct caaactgagt ctcttccagc cgggacagtc accaaggaat gtcacagcag
1441 gtgctggatt aaacgatggg cagtggcact ctgtgtcctt ctctgccaag tggagccata
1501 tgaatgtggt ggtggacgat gacacagctg ttcagcccct ggtggctgtg ctcattgatt
1561 caggtgacac ctattatttt ggaggctgcc tggacaacag ctctggctct ggatgtaaaa
1621 gccccctggg agggtttcag ggctgcctaa ggctcatcac cattggtgac aaagcggtgg
1681 atcccatctt agtacagcag ggggcgctgg ggagtttcag ggacctccag atagactcct
1741 gcggcatcac agacaggtgc ttgcccagct actgtgagca tgggggcgag tgttcccagt
1801 cgtgggacac cttctcctgt gactgtctag gcacaggcta tacgggcgag acctgccatt
1861 cctctctcta cgagcagtct tgtgaagccc acaagcaccg agggaacccg tctgggcttt
1921 actatattga tgcagatgga agtggccccc tgggaccatt tcttgtgtac tgcaatatga
1981 cagcagacgc cgcgtggacg gtggtgcagc acggtggccc cgacgcggtg accctccgag
2041 gtgcccccag cgggcacccg cgctcggctg tgtccttcgc gtacgcagcg ggcgcggggc
2101 agctgcggtc cgcggtgaac ctggcggagc gctgcgagca gcggctggct ctgcgctgcg
2161 ggacggcgcg gcgcccggac tcacgagatg gaaccccact gagctggtgg gttggaagaa
2221 ccaatgaaac acacacttac tggggaggtt ctctgcctga tgctcaaaag tgtacttgtg
2281 gattagaggg gaactgcatt gattctcagt attactgcaa ctgtgatgct ggccggaatg
2341 aatggactag tgacacaata gtcctttccc aaaaggagca cctgccagtc actcagattg
2401 tgatgacaga cacaggccaa ccacattccg aagcagatta tacactgggg ccactgctct
2461 gccgcggaga tcagtcattt tggaattcag cttccttcaa cactgagact tcataccttc
2521 atttccctgc tttccacgga gaactcactg ctgacgtgtg cttctttttt aagaccacag
2581 tttcctctgg ggtgtttatg gagaacctgg ggatcacaga tttcatcagg attgagctgc
2641 gtgctcccac agaagtgacc ttttccttcg atgtggggaa tggaccttgt gaggtcacgg
2701 tgcagtcacc cactcccttt aatgacaatc agtggcacca cgtgagggca gagagaaatg
2761 ttaaaggagc gtctcttcaa gttgatcagc ttcctcagaa gatgcagcct gcccctgctg
2821 atgggcacgt tcgtttacag ctcaacagcc agctcttcat tggtggaacg gccaccagac
2881 agagaggctt tctaggatgc attcggtctc tgcagttgaa cggggtggcc ctggatctgg
2941 aagaaagagc cacagtgacg ccaggagtgg agccagggtg tgcaggacac tgcagcacct
3001 atggacactt gtgtcgcaat ggagggagat gcagagagaa acgcaggggg gtcacctgtg
3061 actgtgcctt ctcagcctat gatgggccgt tctgctccaa tgagatttcc gcatattttg
3121 caactggctc ctcaatgaca taccattttc aagaacatta cactttaagt gaaaactcca
3181 gctctctcgt ttcttcatta cacagagatg taacattgac cagagaaatg atcacactga
3241 gcttccgaac cacacgaact ccgagcttat tgctgtatgt gagctctttc tatgaggaat
3301 acctttcagt tatcctcgcc aacaatggaa gtttgcagat taggtacaag ctagatagac
3361 atcaaaatcc tgatgcattt acctttgatt ttaaaaacat ggctgatggg caacttcacc
3421 aagtgaagat taacagagaa gaagctgtgg tcatggtaga ggttaaccag agcacaaaga
3481 aacaagtcat cttgtcctca gggacagaat tcaacgccgt caaatctctc atattgggaa
3541 aggttttaga ggctgccggc gcggacccgg acacaaggcg ggcggcgact agtggcttca
3601 ctggctgcct ctcggcggtg cgcttcggcc gcgctgctcc cctgaaggcg gcgctgcgcc
3661 ccagcggccc ctcccgggtc accgtccgcg gccacgtggc ccctatggcc cgctgcgcag
3721 cgggggcggc gtccggctcc ccggcgcggg aactggctcc ccgactcgcg gggggcgcag
3781 gtcgttctgg accagcggat gagggagagc ccttggttaa tgcagacaga agagactctg
3841 ctgtcatcgg aggtgtgata gcagtggtga tatttatttt gctttgcatc actgccatag
3901 ccatacgcat ctatcaacag agaaagttac gcaaagaaaa tgagtcaaaa gtctcaaaaa
3961 aagaagagtg ctaggacagc tctaaacagt gagctcgatg tgcaaaacgc agtccatgaa
4021 aaccagaaag agcgagtctt ctgattggca gctgtggctg tctctatcat cgtgactgtg
4081 gacttccctg ctgttgccat cagggtgcac acaagcaggt gcagtgctgt cacctggctg
4141 aagacctgca gcctcggagc ctctgggagg tccctttctc cctcggtgaa acacagtcct
4201 ccacatcaat ttccaaacaa tgaattaggt atggccattc atcactgttc agtagtttcc
4261 ccgtccaaag gctctcttcc aaaactgcag tttgatctgt gttaataatt gtggggtttt
4321 agatgagaaa atggctataa agctgtggcc ctactttatt ttttaaaaat gacagaactt
4381 ttgttcagat gtaaaagaca aaattgcact ttaatgtttt ttgttacttg aaaacatatc
4441 tgggatccct ttttttggtc ctctgctgat atttataaaa caagaaatgc ttcttggact
4501 accttcactg gcatttccat agtcctggaa tccagagcca agtggcctat ctaaaattca
4561 cagccctttt attctcctgt gtgatggtta atacaacaca gttgaagcct ggaaacacta
4621 ccattatttt tggtgtattg ctttttctaa ttgactgttt ttaatgattt tgatacattt
4681 taatgttgaa attaatattg aatgttagct atgaaatttt agtattgaat tttataatgg
4741 aacagaacat tggtaggtaa caagatgcaa gaggatgtca atacaagatt gtctgcctgt
4801 ttttctttgt aatttgtaat tacagttttt gtaacttgtg attatgtttt taactaaatt
4861 taccaccaga tacaaacaat acttcttaca cagagttatc ctttatttat atcattaaga
4921 cgtgaatgaa acatcatcct aacttacttc cccaagatat tgagaggtca tatctgtttt
4981 tctttatcat tcatttcttt ttctaaaagt tgttactgat atgcttttga tttcctatga
5041 ctctattatg ttgtacagaa catcttttca atttattaaa aaaatagctt aactgaaaaa
5101 aaaaaaaaaa aaaaaaaaa
//