LOCUS AF332219 9146 bp mRNA linear HUM 08-JUL-2003
DEFINITION Homo sapiens chromosome X protocadherin 11 (PCDH11) mRNA, complete
cds, alternatively spliced.
ACCESSION AF332219
VERSION AF332219.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 9146)
AUTHORS Skaletsky,H., Kuroda-Kawaguchi,T., Minx,P.J., Cordum,H.S.,
Hillier,L., Brown,L.G., Repping,S., Pyntikova,T., Ali,J., Bieri,T.,
Chinwalla,A., Delehaunty,A., Delehaunty,K., Du,H., Fewell,G.,
Fulton,L., Fulton,R., Graves,T., Hou,S.F., Latrielle,P.,
Leonard,S., Mardis,E., Maupin,R., McPherson,J., Miner,T., Nash,W.,
Nguyen,C., Ozersky,P., Pepin,K., Rock,S., Rohlfing,T., Scott,K.,
Schultz,B., Strong,C., Tin-Wollam,A., Yang,S.P., Waterston,R.H.,
Wilson,R.K., Rozen,S. and Page,D.C.
TITLE The male-specific region of the human Y chromosome is a mosaic of
discrete sequence classes
JOURNAL Nature 423 (6942), 825-837 (2003)
PUBMED 12815422
REFERENCE 2 (bases 1 to 9146)
AUTHORS Kuroda-Kawaguchi,T., Skaletsky,H., Minx,P.J., Brown,L.G., Rozen,S.,
Wilson,R.K., Waterston,R.H. and Page,D.C.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2000) Whitehead Institute for Biomedical
Research, 9 Cambridge Center, Cambridge, MA 02142, USA
FEATURES Location/Qualifiers
source 1..9146
/db_xref="H-InvDB:HIT000077704"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="X"
gene 1..9146
/gene="PCDH11"
CDS 846..4859
/gene="PCDH11"
/note="alternatively spliced"
/codon_start=1
/product="protocadherin 11"
/protein_id="AAK13471.1"
/translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL
KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR
DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL
PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK
VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA
DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL
MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA
MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD
APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN
SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV
IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY
ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD
VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT
EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT
PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ
TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF
VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME
IWIHPQPQSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRA
TPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDNCTQECLIYGHSDACWMPA
SLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQTIALCHSPPPI
QVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHRSQA
QSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPRQ
QARPSRGDSPIMEEHPL"
BASE COUNT 2840 a 1779 c 1631 g 2896 t
ORIGIN
1 ctggtggtcc agtacctcca aagatatgga atacactcct gaaatatcct gaaaactttt
61 ttttttcaga atcctttaat aagcagttat gtcaatctga aagttgctta cttgtacttt
121 atattaatag ctattcttgt ttttcttatc caaagaaaaa tcctctaatc cccttttcac
181 atgatagttg ttaccatgtt taggcattag tcacatcaac ccctctcctc tcccaaactt
241 ctcttcttca aatcaaactt tattagtccc tcctttataa tgattccttg cctcgtttta
301 tccagatcaa ttttttttca ctttgatgcc cagagctgaa gaaatggact actgtataaa
361 ttattcattg ccaagagaat aattgcattt taaacccata ttataacaaa gaataatgat
421 tatattttgt gatttgtaac aaataccctt tattttccct taactattga attaaatatt
481 ttaattattt gtattctctt taactatctt ggtatattaa agtattatct tttatatatt
541 tatcaatggt ggacactttt ataggtactc tgtgtcattt ttgatactgt aggtatctta
601 tttcatttat ctttattctt aatgtacgaa ttcataatat ttgattcaga acaaatttat
661 cactaattaa cagagtgtca attatgctaa catctcattt actgatttta atttaaaaca
721 gtttttgtta acatgcatgt ttagggttgg cttcttaata atttcttctt cctcttctct
781 ctctcctctt cttttggtca gtgttgtgcg ggttaataca acaaactgta acaagtgtac
841 ctggtatgga cttgttgtcc gggacgtaca ttttcgcggt cctgctagca tgcgtggtgt
901 tccactctgg cgcccaggag aaaaactaca ccatccgaga agaaatgcca gaaaacgtcc
961 tgataggcga cttgttgaaa gaccttaact tgtcgctgat tccaaacaag tccttgacaa
1021 ctgctatgca gttcaagcta gtgtacaaga ccggagatgt gccactgatt cgaattgaag
1081 aggatactgg tgagatcttc actactggcg ctcgcattga tcgtgagaaa ttatgtgctg
1141 gtatcccaag ggatgagcat tgcttttatg aagtggaggt tgccattttg ccggatgaaa
1201 tatttagact ggttaagata cgttttctga tagaagatat aaatgataat gcaccattgt
1261 tcccagcaac agttatcaac atatcaattc cagagaactc ggctataaac tctaaatata
1321 ctctcccagc ggctgttgat cctgacgtag gaataaacgg agttcaaaac tacgaactaa
1381 ttaagagtca aaacattttt ggcctcgatg tcattgaaac accagaagga gacaagatgc
1441 cacaactgat tgttcaaaag gagttagata gggaagagaa ggatacctac gtgatgaaag
1501 taaaggttga agatggtggc tttcctcaaa gatccagtac tgctattttg caagtgagtg
1561 ttactgatac aaatgacaac cacccagtct ttaaggagac agagattgaa gtcagtatac
1621 cagaaaatgc tcctgtaggc acttcagtga cacagctcca tgccacagat gctgacatag
1681 gtgaaaatgc caagatccac ttctctttca gcaatctagt ctccaacatt gccaggagat
1741 tatttcacct caatgccacc actggactta tcacaatcaa agaaccactg gatagggaag
1801 aaacaccaaa ccacaagtta ctggttttgg caagtgatgg tggattgatg ccagcaagag
1861 caatggtgct ggtaaatgtt acagatgtca atgataatgt cccatccatt gacataagat
1921 acatcgtcaa tcctgtcaat gacacagttg ttctttcaga aaatattcca ctcaacacca
1981 aaattgctct cataactgtg acggataagg atgcggacca taatggcagg gtgacatgct
2041 tcacagatca tgaaatccct ttcagattaa ggccagtatt cagtaatcag ttcctcctgg
2101 agactgcagc atatcttgac tatgagtcca caaaagaata tgccattaaa ttactggctg
2161 cagatgctgg caaacctcct ttgaatcagt cagcaatgct cttcatcaaa gtgaaagatg
2221 aaaatgacaa tgctccagtt ttcacccagt ctttcgtaac tgtttctatt cctgagaata
2281 actctcctgg catccagttg acgaaagtaa gtgcaatgga tgcagacagt gggcctaatg
2341 ctaagatcaa ttacctgcta ggccctgatg ctccacctga attcagcctg gattgtcgta
2401 caggcatgct gactgtagtg aagaaactag atagagaaaa agaggataaa tatttattca
2461 caattctggc aaaagataac ggggtaccac ccttaaccag caatgtcaca gtctttgtaa
2521 gcattattga tcagaatgac aatagcccag ttttcactca caatgaatac aacttctatg
2581 tcccagaaaa ccttccaagg catggtacag taggactaat cactgtaact gatcctgatt
2641 atggagacaa ttctgcagtt acgctctcca ttttagatga gaatgatgac ttcaccattg
2701 attcacaaac tggtgtcatc cgaccaaata tttcatttga tagagaaaaa caagaatctt
2761 acactttcta tgtaaaggct gaggatggtg gtagagtatc acgttcttca agtgccaaag
2821 taaccataaa tgtggttgat gtcaatgaca acaaaccagt tttcattgtc cctccttcca
2881 actgttctta tgaattggtt ctaccgtcca ctaatccagg cacagtggtc tttcaggtaa
2941 ttgctgttga caatgacact ggcatgaatg cagaggttcg ttacagcatt gtaggaggaa
3001 acacaagaga tctgtttgca atcgaccaag aaacaggcaa cataacattg atggagaaat
3061 gtgatgttac agaccttggt ttacacagag tgttggtcaa agctaatgac ttaggacagc
3121 ctgattctct cttcagtgtt gtaattgtca atctgttcgt gaatgagtcg gtgaccaatg
3181 ctacactgat taatgaactg gtgcgcaaaa gcactgaagc accagtgacc ccaaatactg
3241 agatagctga tgtatcctca ccaactagtg actatgtcaa gatcctggtt gcagctgttg
3301 ctggcaccat aactgtcgtt gtagttattt tcatcactgc tgtagtaaga tgtcgccagg
3361 caccacacct taaggctgct cagaaaaaca agcagaattc tgaatgggct accccaaacc
3421 cagaaaacag gcagatgata atgatgaaga aaaagaaaaa gaagaagaag cattccccta
3481 agaacttgct gcttaatttt gtcactattg aagaaactaa ggcagatgat gttgacagtg
3541 atggaaacag agtcacacta gaccttccta ttgatctaga agagcaaaca atgggaaagt
3601 acaattgggt aactacacct actactttca agcccgacag ccctgatttg gcccgacact
3661 acaaatctgc ctctccacag cctgccttcc aaattcagcc tgaaactccc ctgaattcga
3721 agcaccacat catccaagaa ctgcctctcg ataacacctt tgtggcctgt gactctatct
3781 ccaagtgttc ctcaagcagt tcagatccct acagcgtttc tgactgtggc tatccagtga
3841 cgaccttcga ggtacctgtg tccgtacaca ccagaccgcc aatgaaggag gttgtgcgat
3901 cttgcacccc catgaaagag tctacaacta tggagatctg gattcatccc caaccacagt
3961 cccagcggcg tgtcacattt cacctgccag aaggctctca ggaaagcagc agtgatggtg
4021 gactgggaga ccatgatgca ggcagcctta ccagcacatc tcatggcctg ccccttggct
4081 atcctcagga ggagtacttt gatcgtgcta cacccagcaa tcgcactgaa ggggatggca
4141 actccgatcc tgaatctact ttcatacctg gactaaagaa agctgcagaa ataactgttc
4201 aaccaactgt ggaagaggcc tctgacaact gcactcaaga atgtctcatc tatggccatt
4261 ctgatgcctg ctggatgccg gcatctctgg atcattccag ctcttcgcaa gcacaggcct
4321 ctgctctatg ccacagccca ccactgtcac aggcctctac tcagcaccac agcccacgag
4381 tgacacagac cattgctctc tgccacagcc ctccagtgac acagaccatc gcattgtgcc
4441 acagcccacc accgatacag gtgtctgctc tccaccacag tcctcctcta gtgcaggcta
4501 ctgcacttca ccacagccca ccatcagcac aggcctcagc cctctgctac agccctcctt
4561 tagcacaggc tgctgcaatc agccacagct ctcctctgcc acaggttatt gccctccatc
4621 gtagtcaggc ccaatcatca gtcagtttgc agcaaggttg ggtgcaaggt gctgatgggc
4681 tatgctctgt tgatcaggga gtgcaaggta gtgcaacatc tcagttttac accatgtctg
4741 aaagacttca tcccagtgat gattcaatta aagtcattcc tttgacaacc ttcactccac
4801 gccaacaggc cagaccgtcc agaggtgatt cccccattat ggaagaacat cccttgtaaa
4861 gctaaaatag ttacttcaaa ttttcagaaa agatgtatat agtcaaaatt taagatacaa
4921 ttccaatgag tattctgatt atcagatttg taaataacta tgtaaataga aacagatacc
4981 agaataaatc tacagctaga cccttagtca atagttaacc aaaaaattgc aatttgttta
5041 attcagaatg tgtatttaaa aagaaaagga atttaacaat ttgcatcccc ttgtacagta
5101 aggcttatca tgacagagcg cactatttct gatgtacagt attttttgtt gtttttatca
5161 tcatgtgcaa tattactgat ttgtttccat gctgattgtg tggaaccagt atgtagcaaa
5221 tggaaagcct agaaatatct tattttctaa gtttaccttt agtttaccta aacttttgtt
5281 cagataacgt taaaaggtat acgtactcta gccttttttt gggctttctt tttgattttt
5341 gtttgttgtt ttcagttttt ttgttgttgt tagtgagtct cccttcaaaa tacgcagtag
5401 gtagtgtaaa tactgcttgt ttgtgtctct ctgctgtcat gttttctacc ttattccaat
5461 actatattgt tgataaaatt tgtatataca ttttcaataa agaatatgta taaactgtac
5521 agatctagat ctacaaccta tttctctact ctttagtaga gttcgagaca cagaagtgca
5581 ataactgccc taattaagca actatttgtt aaaaagggcc tctttttact ttaatagttt
5641 agtgtaaagt acatcagaaa taaagctgta tctgccattt taagcctgta gtccattatt
5701 acttgggtct ttacttctgg gaatttgtat gtaacagcct agaaaattaa aaggaggtgg
5761 atgcatccaa agcacgagtc acttaaaata tcgacggtaa actactattt tgtagagaaa
5821 ctcaggaaga tttaaatgtt gatttgacag ctcaataggc tgttaccaaa gggtgttcag
5881 taaaaataac aaatacatgt aactgtagat aaaaccatat actaaatcta taagactaag
5941 ggatttttgt tattctagct caacttactg aagaaaacca ctaataacaa caagaatatc
6001 aggaaggaac ttttcaagaa atgtaattat aaatctacat caaacagaat tttaaggaaa
6061 aatgcagagg gagaaataag gcacatgact gcttcttgca gtcaacaaga aataccaata
6121 acacacacag aacaaaaacc atcaaaatct catatatgaa ataaaatata ttcttctaag
6181 caaagaaaca gtactattca tagaaaacat tagttttctt ctgttgtctg ttatttcctt
6241 cttgtatcct cttaactggc cattatcttg tatgtgcaca ttttataaat gtacagaaac
6301 atcaccaact taattttctt ccatagcaaa actgagaaaa taccttgttt cagtataaca
6361 ctaaaccaag agacaattga tgtttaatgg gggcggttgg ggtggggggg ggagtcaata
6421 tctcctattg attaacttag acatagattt tgtaatgtat aacttgatat ttaatttatg
6481 attaaactgt gtgtaaattt tgtaacataa actgtggtaa ttgcataatt tcattggtga
6541 ggatttccac tgaatattga gaaagtttct tttcatgtgc ccagcaggtt aagtagcgtt
6601 ttcagaatat acattattcc catccattgt aaagttcctt aagtcatatt tgactgggcg
6661 tgcagaataa cttcttaact tttaactatc agagtttgat taataaaatt aattaatgtt
6721 ttttctcctt cgtgttgtta atgttccaag ggatttggag catactggtt ttccaggtgc
6781 atgtgaatcc cgaaggactg atgatatttg aatgtttatt aaattattat catacaaatg
6841 tgttgatatt gtggctattg ttgatgttga aaattttaaa cttggggaag attaagaaaa
6901 gaaccaatag tgacaaaaat cagtgcttcc agtagatttt agaacattct ttgcctcaaa
6961 aaacctgcaa agatgatgtg agattttttc ttgtgtttta attattttca cattttctct
7021 ctgcaaaact ttagttttct gatgatctac acacacacac acacacacac gtgcacacac
7081 acacacattt aaatgatata aaaagaagag gttgaaagat tattaaataa cttatcaggc
7141 atctcaatgg ttactatcta tgttagtgaa aatcaaatag gactcaaagt tggatatttg
7201 ggatttttct tctgacagta taatttattg agttactagg gaggttctta aatcctcata
7261 tctggaaact tgtgacgttt tgacaccttt cctatagatg atataggaat gaaccaatac
7321 gcttttatta ccctttctaa ctctgatttt ataatcagac ttagattgtg tttagaatat
7381 taaatgactg ggcaccctct tcttggtttt taccagagag gctttgaatg gaagcaggct
7441 gagagtagcc aaagaggcaa ggggtattag cccagttatt ctcccctatg ccttccttct
7501 ctttctaagc atccactagg tctggccttg gaaacctgtt acttctaggg cttcagatct
7561 gatgatatct ttttcatcac attacaagtt atttctctga ctgaatagac agtggtatag
7621 gttgacacag cacacaagtg gctattgtga tgtatgatgt atgtagtcct acaactgcaa
7681 aacgtcttac tgaaccaaca atcaaaaaat ggttctgttt taaaaaggat tttgtttgat
7741 ttgaaattaa aacttcaagc tgaatgactt atatgagaat aatacgttca atcaaagtag
7801 ttattctatt ttgtgtccat attccattag attgtgatta ttaattttct agctatggta
7861 ttactatatc acacttgtga gtatgtattc aaatactaag tatcttatat gctacgtgca
7921 tacacattct tttcttaaac tttacctgtg ttttaactaa tattgtgtca gtgtattaaa
7981 aattagcttt tacatatgat atctacaatg taataaattt agagagtaat tttgtgtatt
8041 cttatttact taacatttta cttttaatta tgtaaatttg gttagaaaat aataataaat
8101 ggttagtgct attgtgtaat ggtagcagtt acaaagagcc tctgccttcc caaactaata
8161 tttatcacac atggtcatta aatgggaaaa aaatagacta aacaaatcac aaattgttca
8221 gttcttaaaa tgtaattatg tcacacacac aaaaaatcct tttcaatcct gagaaaatta
8281 aaggcgtttt actcacatgg ctatttcaac attagttttt tttgtttgtt tctttttcat
8341 ggtattactg aaggtgtgta tactccctaa tacacattta tgaaaatcta cttgtttagg
8401 cttttattta tactcttctg atttatattt tttattataa ttattatttc ttatctttct
8461 tcttttatat tttttggaaa ccaaatttat agttagttta ggtaaacttt ttattatgac
8521 cattagaaac tattttgaat gcttccaact ggctcaattg gccgggaaaa catgggagca
8581 agagaagctg aaatatattt ctgcaagaac ctttctatat tatgtgccaa ttaccacacc
8641 agatcaattt tatgcagagg ccttaaaata ttctttcaca gtagctttct tacactaacc
8701 gtcatgtgct tttagtaaat atgattttta aaagcagttc aagttgacaa cagcagaaac
8761 agtaacaaaa aaatctgctc agaaaaatgt atgtgcacaa ataaaaaaaa ttaatggcaa
8821 ttgtttagtg attgtaagtg atacttttta aagagtaaac tgtgtgaaat ttatactatc
8881 cctgcttaaa atattaagat ttttatgaaa tatgtattta tgtttgtatt gtgggaagat
8941 tcctcctctg tgatatcata cagcatctga aagtgaacag tatcccaaag cagttccaac
9001 catgctttgg aagtaagaag gttgactatt gtatggccaa ggatggcagt atgtaatcca
9061 gaagcaaact tgtattaatt gttctatttc aggttctgta ttgcatgttt tcttattaat
9121 atatattaat aaaagttatg agaaat
//