LOCUS AF332218 9176 bp mRNA linear HUM 08-JUL-2003
DEFINITION Homo sapiens chromosome X protocadherin 11 (PCDH11) mRNA, complete
cds, alternatively spliced.
ACCESSION AF332218
VERSION AF332218.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 9176)
AUTHORS Skaletsky,H., Kuroda-Kawaguchi,T., Minx,P.J., Cordum,H.S.,
Hillier,L., Brown,L.G., Repping,S., Pyntikova,T., Ali,J., Bieri,T.,
Chinwalla,A., Delehaunty,A., Delehaunty,K., Du,H., Fewell,G.,
Fulton,L., Fulton,R., Graves,T., Hou,S.F., Latrielle,P.,
Leonard,S., Mardis,E., Maupin,R., McPherson,J., Miner,T., Nash,W.,
Nguyen,C., Ozersky,P., Pepin,K., Rock,S., Rohlfing,T., Scott,K.,
Schultz,B., Strong,C., Tin-Wollam,A., Yang,S.P., Waterston,R.H.,
Wilson,R.K., Rozen,S. and Page,D.C.
TITLE The male-specific region of the human Y chromosome is a mosaic of
discrete sequence classes
JOURNAL Nature 423 (6942), 825-837 (2003)
PUBMED 12815422
REFERENCE 2 (bases 1 to 9176)
AUTHORS Kuroda-Kawaguchi,T., Skaletsky,H., Minx,P.J., Brown,L.G., Rozen,S.,
Wilson,R.K., Waterston,R.H. and Page,D.C.
TITLE Direct Submission
JOURNAL Submitted (26-DEC-2000) Whitehead Institute for Biomedical
Research, 9 Cambridge Center, Cambridge, MA 02142, USA
FEATURES Location/Qualifiers
source 1..9176
/db_xref="H-InvDB:HIT000077703"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="X"
gene 1..9176
/gene="PCDH11"
CDS 846..4889
/gene="PCDH11"
/note="alternatively spliced"
/codon_start=1
/product="protocadherin 11"
/protein_id="AAK13470.1"
/translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL
KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR
DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL
PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK
VKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLHATDA
DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL
MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA
MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD
APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN
SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV
IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY
ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD
VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT
EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT
PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ
TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF
VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME
IWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLG
YPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDNCTQECLIY
GHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQT
IALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLP
QVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKV
IPLTTFTPRQQARPSRGDSPIMEEHPL"
BASE COUNT 2852 a 1782 c 1643 g 2899 t
ORIGIN
1 ctggtggtcc agtacctcca aagatatgga atacactcct gaaatatcct gaaaactttt
61 ttttttcaga atcctttaat aagcagttat gtcaatctga aagttgctta cttgtacttt
121 atattaatag ctattcttgt ttttcttatc caaagaaaaa tcctctaatc cccttttcac
181 atgatagttg ttaccatgtt taggcattag tcacatcaac ccctctcctc tcccaaactt
241 ctcttcttca aatcaaactt tattagtccc tcctttataa tgattccttg cctcgtttta
301 tccagatcaa ttttttttca ctttgatgcc cagagctgaa gaaatggact actgtataaa
361 ttattcattg ccaagagaat aattgcattt taaacccata ttataacaaa gaataatgat
421 tatattttgt gatttgtaac aaataccctt tattttccct taactattga attaaatatt
481 ttaattattt gtattctctt taactatctt ggtatattaa agtattatct tttatatatt
541 tatcaatggt ggacactttt ataggtactc tgtgtcattt ttgatactgt aggtatctta
601 tttcatttat ctttattctt aatgtacgaa ttcataatat ttgattcaga acaaatttat
661 cactaattaa cagagtgtca attatgctaa catctcattt actgatttta atttaaaaca
721 gtttttgtta acatgcatgt ttagggttgg cttcttaata atttcttctt cctcttctct
781 ctctcctctt cttttggtca gtgttgtgcg ggttaataca acaaactgta acaagtgtac
841 ctggtatgga cttgttgtcc gggacgtaca ttttcgcggt cctgctagca tgcgtggtgt
901 tccactctgg cgcccaggag aaaaactaca ccatccgaga agaaatgcca gaaaacgtcc
961 tgataggcga cttgttgaaa gaccttaact tgtcgctgat tccaaacaag tccttgacaa
1021 ctgctatgca gttcaagcta gtgtacaaga ccggagatgt gccactgatt cgaattgaag
1081 aggatactgg tgagatcttc actactggcg ctcgcattga tcgtgagaaa ttatgtgctg
1141 gtatcccaag ggatgagcat tgcttttatg aagtggaggt tgccattttg ccggatgaaa
1201 tatttagact ggttaagata cgttttctga tagaagatat aaatgataat gcaccattgt
1261 tcccagcaac agttatcaac atatcaattc cagagaactc ggctataaac tctaaatata
1321 ctctcccagc ggctgttgat cctgacgtag gaataaacgg agttcaaaac tacgaactaa
1381 ttaagagtca aaacattttt ggcctcgatg tcattgaaac accagaagga gacaagatgc
1441 cacaactgat tgttcaaaag gagttagata gggaagagaa ggatacctac gtgatgaaag
1501 taaaggttga agatggtggc tttcctcaaa gatccagtac tgctattttg caagtgagtg
1561 ttactgatac aaatgacaac cacccagtct ttaaggagac agagattgaa gtcagtatac
1621 cagaaaatgc tcctgtaggc acttcagtga cacagctcca tgccacagat gctgacatag
1681 gtgaaaatgc caagatccac ttctctttca gcaatctagt ctccaacatt gccaggagat
1741 tatttcacct caatgccacc actggactta tcacaatcaa agaaccactg gatagggaag
1801 aaacaccaaa ccacaagtta ctggttttgg caagtgatgg tggattgatg ccagcaagag
1861 caatggtgct ggtaaatgtt acagatgtca atgataatgt cccatccatt gacataagat
1921 acatcgtcaa tcctgtcaat gacacagttg ttctttcaga aaatattcca ctcaacacca
1981 aaattgctct cataactgtg acggataagg atgcggacca taatggcagg gtgacatgct
2041 tcacagatca tgaaatccct ttcagattaa ggccagtatt cagtaatcag ttcctcctgg
2101 agactgcagc atatcttgac tatgagtcca caaaagaata tgccattaaa ttactggctg
2161 cagatgctgg caaacctcct ttgaatcagt cagcaatgct cttcatcaaa gtgaaagatg
2221 aaaatgacaa tgctccagtt ttcacccagt ctttcgtaac tgtttctatt cctgagaata
2281 actctcctgg catccagttg acgaaagtaa gtgcaatgga tgcagacagt gggcctaatg
2341 ctaagatcaa ttacctgcta ggccctgatg ctccacctga attcagcctg gattgtcgta
2401 caggcatgct gactgtagtg aagaaactag atagagaaaa agaggataaa tatttattca
2461 caattctggc aaaagataac ggggtaccac ccttaaccag caatgtcaca gtctttgtaa
2521 gcattattga tcagaatgac aatagcccag ttttcactca caatgaatac aacttctatg
2581 tcccagaaaa ccttccaagg catggtacag taggactaat cactgtaact gatcctgatt
2641 atggagacaa ttctgcagtt acgctctcca ttttagatga gaatgatgac ttcaccattg
2701 attcacaaac tggtgtcatc cgaccaaata tttcatttga tagagaaaaa caagaatctt
2761 acactttcta tgtaaaggct gaggatggtg gtagagtatc acgttcttca agtgccaaag
2821 taaccataaa tgtggttgat gtcaatgaca acaaaccagt tttcattgtc cctccttcca
2881 actgttctta tgaattggtt ctaccgtcca ctaatccagg cacagtggtc tttcaggtaa
2941 ttgctgttga caatgacact ggcatgaatg cagaggttcg ttacagcatt gtaggaggaa
3001 acacaagaga tctgtttgca atcgaccaag aaacaggcaa cataacattg atggagaaat
3061 gtgatgttac agaccttggt ttacacagag tgttggtcaa agctaatgac ttaggacagc
3121 ctgattctct cttcagtgtt gtaattgtca atctgttcgt gaatgagtcg gtgaccaatg
3181 ctacactgat taatgaactg gtgcgcaaaa gcactgaagc accagtgacc ccaaatactg
3241 agatagctga tgtatcctca ccaactagtg actatgtcaa gatcctggtt gcagctgttg
3301 ctggcaccat aactgtcgtt gtagttattt tcatcactgc tgtagtaaga tgtcgccagg
3361 caccacacct taaggctgct cagaaaaaca agcagaattc tgaatgggct accccaaacc
3421 cagaaaacag gcagatgata atgatgaaga aaaagaaaaa gaagaagaag cattccccta
3481 agaacttgct gcttaatttt gtcactattg aagaaactaa ggcagatgat gttgacagtg
3541 atggaaacag agtcacacta gaccttccta ttgatctaga agagcaaaca atgggaaagt
3601 acaattgggt aactacacct actactttca agcccgacag ccctgatttg gcccgacact
3661 acaaatctgc ctctccacag cctgccttcc aaattcagcc tgaaactccc ctgaattcga
3721 agcaccacat catccaagaa ctgcctctcg ataacacctt tgtggcctgt gactctatct
3781 ccaagtgttc ctcaagcagt tcagatccct acagcgtttc tgactgtggc tatccagtga
3841 cgaccttcga ggtacctgtg tccgtacaca ccagaccgcc aatgaaggag gttgtgcgat
3901 cttgcacccc catgaaagag tctacaacta tggagatctg gattcatccc caaccacagc
3961 ggaaatctga agggaaagtg gcaggaaagt cccagcggcg tgtcacattt cacctgccag
4021 aaggctctca ggaaagcagc agtgatggtg gactgggaga ccatgatgca ggcagcctta
4081 ccagcacatc tcatggcctg ccccttggct atcctcagga ggagtacttt gatcgtgcta
4141 cacccagcaa tcgcactgaa ggggatggca actccgatcc tgaatctact ttcatacctg
4201 gactaaagaa agctgcagaa ataactgttc aaccaactgt ggaagaggcc tctgacaact
4261 gcactcaaga atgtctcatc tatggccatt ctgatgcctg ctggatgccg gcatctctgg
4321 atcattccag ctcttcgcaa gcacaggcct ctgctctatg ccacagccca ccactgtcac
4381 aggcctctac tcagcaccac agcccacgag tgacacagac cattgctctc tgccacagcc
4441 ctccagtgac acagaccatc gcattgtgcc acagcccacc accgatacag gtgtctgctc
4501 tccaccacag tcctcctcta gtgcaggcta ctgcacttca ccacagccca ccatcagcac
4561 aggcctcagc cctctgctac agccctcctt tagcacaggc tgctgcaatc agccacagct
4621 ctcctctgcc acaggttatt gccctccatc gtagtcaggc ccaatcatca gtcagtttgc
4681 agcaaggttg ggtgcaaggt gctgatgggc tatgctctgt tgatcaggga gtgcaaggta
4741 gtgcaacatc tcagttttac accatgtctg aaagacttca tcccagtgat gattcaatta
4801 aagtcattcc tttgacaacc ttcactccac gccaacaggc cagaccgtcc agaggtgatt
4861 cccccattat ggaagaacat cccttgtaaa gctaaaatag ttacttcaaa ttttcagaaa
4921 agatgtatat agtcaaaatt taagatacaa ttccaatgag tattctgatt atcagatttg
4981 taaataacta tgtaaataga aacagatacc agaataaatc tacagctaga cccttagtca
5041 atagttaacc aaaaaattgc aatttgttta attcagaatg tgtatttaaa aagaaaagga
5101 atttaacaat ttgcatcccc ttgtacagta aggcttatca tgacagagcg cactatttct
5161 gatgtacagt attttttgtt gtttttatca tcatgtgcaa tattactgat ttgtttccat
5221 gctgattgtg tggaaccagt atgtagcaaa tggaaagcct agaaatatct tattttctaa
5281 gtttaccttt agtttaccta aacttttgtt cagataacgt taaaaggtat acgtactcta
5341 gccttttttt gggctttctt tttgattttt gtttgttgtt ttcagttttt ttgttgttgt
5401 tagtgagtct cccttcaaaa tacgcagtag gtagtgtaaa tactgcttgt ttgtgtctct
5461 ctgctgtcat gttttctacc ttattccaat actatattgt tgataaaatt tgtatataca
5521 ttttcaataa agaatatgta taaactgtac agatctagat ctacaaccta tttctctact
5581 ctttagtaga gttcgagaca cagaagtgca ataactgccc taattaagca actatttgtt
5641 aaaaagggcc tctttttact ttaatagttt agtgtaaagt acatcagaaa taaagctgta
5701 tctgccattt taagcctgta gtccattatt acttgggtct ttacttctgg gaatttgtat
5761 gtaacagcct agaaaattaa aaggaggtgg atgcatccaa agcacgagtc acttaaaata
5821 tcgacggtaa actactattt tgtagagaaa ctcaggaaga tttaaatgtt gatttgacag
5881 ctcaataggc tgttaccaaa gggtgttcag taaaaataac aaatacatgt aactgtagat
5941 aaaaccatat actaaatcta taagactaag ggatttttgt tattctagct caacttactg
6001 aagaaaacca ctaataacaa caagaatatc aggaaggaac ttttcaagaa atgtaattat
6061 aaatctacat caaacagaat tttaaggaaa aatgcagagg gagaaataag gcacatgact
6121 gcttcttgca gtcaacaaga aataccaata acacacacag aacaaaaacc atcaaaatct
6181 catatatgaa ataaaatata ttcttctaag caaagaaaca gtactattca tagaaaacat
6241 tagttttctt ctgttgtctg ttatttcctt cttgtatcct cttaactggc cattatcttg
6301 tatgtgcaca ttttataaat gtacagaaac atcaccaact taattttctt ccatagcaaa
6361 actgagaaaa taccttgttt cagtataaca ctaaaccaag agacaattga tgtttaatgg
6421 gggcggttgg ggtggggggg ggagtcaata tctcctattg attaacttag acatagattt
6481 tgtaatgtat aacttgatat ttaatttatg attaaactgt gtgtaaattt tgtaacataa
6541 actgtggtaa ttgcataatt tcattggtga ggatttccac tgaatattga gaaagtttct
6601 tttcatgtgc ccagcaggtt aagtagcgtt ttcagaatat acattattcc catccattgt
6661 aaagttcctt aagtcatatt tgactgggcg tgcagaataa cttcttaact tttaactatc
6721 agagtttgat taataaaatt aattaatgtt ttttctcctt cgtgttgtta atgttccaag
6781 ggatttggag catactggtt ttccaggtgc atgtgaatcc cgaaggactg atgatatttg
6841 aatgtttatt aaattattat catacaaatg tgttgatatt gtggctattg ttgatgttga
6901 aaattttaaa cttggggaag attaagaaaa gaaccaatag tgacaaaaat cagtgcttcc
6961 agtagatttt agaacattct ttgcctcaaa aaacctgcaa agatgatgtg agattttttc
7021 ttgtgtttta attattttca cattttctct ctgcaaaact ttagttttct gatgatctac
7081 acacacacac acacacacac gtgcacacac acacacattt aaatgatata aaaagaagag
7141 gttgaaagat tattaaataa cttatcaggc atctcaatgg ttactatcta tgttagtgaa
7201 aatcaaatag gactcaaagt tggatatttg ggatttttct tctgacagta taatttattg
7261 agttactagg gaggttctta aatcctcata tctggaaact tgtgacgttt tgacaccttt
7321 cctatagatg atataggaat gaaccaatac gcttttatta ccctttctaa ctctgatttt
7381 ataatcagac ttagattgtg tttagaatat taaatgactg ggcaccctct tcttggtttt
7441 taccagagag gctttgaatg gaagcaggct gagagtagcc aaagaggcaa ggggtattag
7501 cccagttatt ctcccctatg ccttccttct ctttctaagc atccactagg tctggccttg
7561 gaaacctgtt acttctaggg cttcagatct gatgatatct ttttcatcac attacaagtt
7621 atttctctga ctgaatagac agtggtatag gttgacacag cacacaagtg gctattgtga
7681 tgtatgatgt atgtagtcct acaactgcaa aacgtcttac tgaaccaaca atcaaaaaat
7741 ggttctgttt taaaaaggat tttgtttgat ttgaaattaa aacttcaagc tgaatgactt
7801 atatgagaat aatacgttca atcaaagtag ttattctatt ttgtgtccat attccattag
7861 attgtgatta ttaattttct agctatggta ttactatatc acacttgtga gtatgtattc
7921 aaatactaag tatcttatat gctacgtgca tacacattct tttcttaaac tttacctgtg
7981 ttttaactaa tattgtgtca gtgtattaaa aattagcttt tacatatgat atctacaatg
8041 taataaattt agagagtaat tttgtgtatt cttatttact taacatttta cttttaatta
8101 tgtaaatttg gttagaaaat aataataaat ggttagtgct attgtgtaat ggtagcagtt
8161 acaaagagcc tctgccttcc caaactaata tttatcacac atggtcatta aatgggaaaa
8221 aaatagacta aacaaatcac aaattgttca gttcttaaaa tgtaattatg tcacacacac
8281 aaaaaatcct tttcaatcct gagaaaatta aaggcgtttt actcacatgg ctatttcaac
8341 attagttttt tttgtttgtt tctttttcat ggtattactg aaggtgtgta tactccctaa
8401 tacacattta tgaaaatcta cttgtttagg cttttattta tactcttctg atttatattt
8461 tttattataa ttattatttc ttatctttct tcttttatat tttttggaaa ccaaatttat
8521 agttagttta ggtaaacttt ttattatgac cattagaaac tattttgaat gcttccaact
8581 ggctcaattg gccgggaaaa catgggagca agagaagctg aaatatattt ctgcaagaac
8641 ctttctatat tatgtgccaa ttaccacacc agatcaattt tatgcagagg ccttaaaata
8701 ttctttcaca gtagctttct tacactaacc gtcatgtgct tttagtaaat atgattttta
8761 aaagcagttc aagttgacaa cagcagaaac agtaacaaaa aaatctgctc agaaaaatgt
8821 atgtgcacaa ataaaaaaaa ttaatggcaa ttgtttagtg attgtaagtg atacttttta
8881 aagagtaaac tgtgtgaaat ttatactatc cctgcttaaa atattaagat ttttatgaaa
8941 tatgtattta tgtttgtatt gtgggaagat tcctcctctg tgatatcata cagcatctga
9001 aagtgaacag tatcccaaag cagttccaac catgctttgg aagtaagaag gttgactatt
9061 gtatggccaa ggatggcagt atgtaatcca gaagcaaact tgtattaatt gttctatttc
9121 aggttctgta ttgcatgttt tcttattaat atatattaat aaaagttatg agaaat
//