LOCUS AF301013 5209 bp mRNA linear HUM 20-NOV-2000 DEFINITION Homo sapiens regulator of nonsense transcripts 2 (RENT2) mRNA, complete cds. ACCESSION AF301013 VERSION AF301013.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5209) AUTHORS Mendell,J.T., Medghalchi,S.M., Lake,R.G., Noensie,E.N. and Dietz,H.C. TITLE Novel Upf2p orthologues suggest a functional link between translation initiation and nonsense surveillance complexes JOURNAL Mol. Cell. Biol. 20 (23), 8944-8957 (2000) PUBMED 11073994 REFERENCE 2 (bases 1 to 5209) AUTHORS Mendell,J.T., Medghalchi,S.M., Lake,R.G., Noensie,E.N. and Dietz,H.C. TITLE Direct Submission JOURNAL Submitted (29-AUG-2000) The Institute of Genetic Medicine, Johns Hopkins University School of Medicine, 858 Ross Building, 720 Rutland Ave., Baltimore, MD 21205, USA FEATURES Location/Qualifiers source 1..5209 /db_xref="H-InvDB:HIT000076654" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="10" /map="10p15-p13" gene 1..5209 /gene="RENT2" CDS 99..3917 /gene="RENT2" /note="similar to yeast Upf2p/Nmd2p" /codon_start=1 /product="regulator of nonsense transcripts 2" /protein_id="AAG33225.1" /translation="MPAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLT AKKEVSKAPEDKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEER KKQEEQAKRQQEEEAAAQMKEKEESIQLHQEAWERHHLRKELRSKNQNAPDSRPEENF FSRLDSSLKKNTAFVKKLKTITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISD VNCAVHLCSLFHQRYADFAPSLLQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVG IFTDKEGLSLIYEQLKNIINADRESHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKF NLSFPPSEIISPEKQQPFQNLLKEYFTSLTKHLKRDHRELQNTERQNRRILHSKGELS EDRHKQYEEFAMSYQKLLANSQSLADLLDENMPDLPQDKPTPEEHGPGIDIFTPGKPG EYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNEKSCQNKESNKDDTKEAKESKE NKEVSSPDDLELELENLEINDDTLELEGGDEAEDLTKKLLDEQEQEDEEASTGSHLKL IVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANRKKLVRALFIVPRQRLDLLPFYAR LVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIETKNKTVRFIGELTKFKMFTKN DTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHL DARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYKDLSKVTTEKVLRQMRKL PWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLG MEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPE HLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDI DYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSKDSMTEGENLE EDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTDSNKENET DEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVAIPLHL KSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQQQA EQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNAD LIFKTGGRRR" BASE COUNT 1783 a 937 c 1213 g 1276 t ORIGIN 1 gtggggggag gggaggggag agcccgagcg ctggagttgg tgctgggaaa cccggggcta 61 atgttgacaa caggctcgag attgtcctgg gtcacataat gccagctgag cgtaaaaagc 121 cagcaagtat ggaagaaaaa gactctttac caaacaacaa ggaaaaagac tgcagtgaaa 181 ggcggacagt gagcagcaag gagaggccaa aagacgatat caagctcact gccaagaagg 241 aggtcagcaa ggcccctgaa gacaagaaga agagactgga agatgataag agaaaaaagg 301 aagacaagga acgcaagaaa aaagacgaag aaaaggtgaa ggcagaggaa gaatcaaaga 361 aaaaagaaga ggaagaaaaa aagaaacatc aagaggaaga gagaaagaag caagaagagc 421 aggccaaacg tcagcaagaa gaagaagcag ctgctcagat gaaagaaaaa gaagaatcca 481 ttcagcttca tcaggaagct tgggaacgac atcatttaag aaaggaactt cgtagcaaaa 541 accaaaatgc tccggacagc cgaccagagg aaaacttctt cagccgcctc gactcaagtt 601 tgaagaaaaa tactgctttt gtcaagaaac taaaaactat tacagaacaa cagagagact 661 ccttgtccca tgattttaat ggcctaaatt taagcaaata cattgcagaa gctgtagctt 721 ccatcgtgga agcaaaacta aaaatctctg atgtgaactg tgctgtgcac ctctgctctc 781 tctttcacca gcgttatgct gactttgccc catcacttct tcaggtctgg aaaaaacatt 841 ttgaagcaag gaaagaggag aaaacaccta acatcaccaa gttaagaact gatttgcgtt 901 ttattgcaga attgacaata gttgggattt tcactgacaa ggaaggtctt tccttaatct 961 atgaacagct aaaaaatatt attaatgctg atcgggagtc ccacactcat gtctctgtag 1021 tgattagttt ctgtcgacat tgtggagatg atattgctgg acttgtacca aggaaagtaa 1081 agagtgctgc agagaagttt aatttgagtt ttcctcctag tgagataatt agtccagaga 1141 aacaacagcc cttccagaat cttttaaaag agtactttac gtctttgacc aaacacctga 1201 aaagggacca cagggagctc cagaatactg agagacaaaa caggcgcatt ctacattcta 1261 aaggggagct cagtgaagat agacataaac agtatgagga atttgctatg tcttaccaga 1321 agctgctggc aaattctcaa tccttagcag accttttgga tgaaaatatg ccagatcttc 1381 ctcaagacaa accaacacca gaagaacatg ggcctggaat tgatatattc acacctggta 1441 aacctggaga atatgacttg gaaggtggta tatgggaaga tgaagatgct cggaattttt 1501 atgagaacct cattgatttg aaggcttttg tcccagccat cttgtttaaa gacaatgaaa 1561 aaagttgtca gaataaagag tccaacaaag atgataccaa agaggcaaaa gaatctaagg 1621 agaataagga ggtatcaagt cccgatgatt tggaacttga gttggagaat ctagaaatta 1681 atgatgacac cttagaatta gagggtggag atgaagctga agatcttaca aagaaacttc 1741 ttgatgaaca agaacaagaa gatgaggaag ccagcactgg atctcatctc aagctcatag 1801 tagatgcttt cctacagcag ttacccaact gtgtcaaccg agatctgata gacaaggcag 1861 caatggattt ttgcatgaac atgaacacaa aagcaaacag gaagaagttg gtacgggcac 1921 tcttcatagt tcctagacaa aggttggatt tgctaccatt ttatgcaaga ttggttgcta 1981 cattgcatcc ctgcatgtct gatgtagcag aggatctttg ttccatgctg aggggggatt 2041 tcagatttca tgtacggaaa aaggaccaga tcaatattga aacaaagaat aaaactgttc 2101 gttttatagg agaactaact aagtttaaga tgttcaccaa aaatgacaca ctgcattgtt 2161 taaagatgct tctgtcagac ttctctcatc accatattga aatggcatgc accctgctgg 2221 agacatgtgg acggtttctt ttcagatctc cagaatctca cctgaggacc agtgtacttt 2281 tggagcaaat gatgagaaag aagcaagcaa tgcatcttga tgcgagatac gtcacaatgg 2341 tagagaatgc atattactac tgcaacccac ctccagctga aaaaaccgtg aaaaagaaac 2401 gtcctcctct ccaggaatat gtccggaaac ttttgtacaa ggatctctct aaggttacca 2461 ccgagaaggt tttgagacag atgcgaaagc tgccctggca ggaccaagaa gtgaaagact 2521 atgttatttg ttgtatgata aacatctgga atgtgaaata taatagtatt cattgtgtag 2581 ccaacctctt agcaggacta gtgctctacc aagaggatgt tgggatccac gttgtggatg 2641 gagtgttaga agatattcga ttaggaatgg aggttaatca acctaaattt aatcagaggc 2701 gcatcagcag tgccaagttc ttaggagaac tttacaatta ccgaatggtg gaatcagctg 2761 ttattttcag aactctgtat tcttttacct catttggtgt taatcctgat ggctctccaa 2821 gttccctgga cccacctgag catcttttca gaattagact cgtatgcact attctggaca 2881 catgtggcca gtactttgac agaggttcca gtaaacgaaa acttgattgt ttccttgtat 2941 attttcagcg ttatgtttgg tggaagaaaa gtttggaggt ttggacaaaa gaccatccat 3001 ttcctattga tatagattac atgatcagtg atacactaga actgctaaga ccaaagatca 3061 aactctgtaa ttctctggaa gaatccatca ggcaggtaca agacttggaa cgagaattct 3121 taataaaact aggcctagta aatgacaaag actcaaaaga ttctatgaca gaaggagaaa 3181 atcttgaaga ggatgaagaa gaagaagaag gtggggctga aacagaagaa caatctggaa 3241 atgaaagtga agtaaatgag ccagaagaag aggagggttc tgataatgat gatgatgagg 3301 gagaagaaga ggaggaagag aatacagatt accttacaga ttccaataag gaaaatgaaa 3361 ccgatgaaga gaatactgag gtaatgatta aaggcggtgg acttaagcat gtaccttgtg 3421 tagaagatga ggacttcatt caagctctgg ataaaatgat gctagaaaat ctacagcaac 3481 gaagtggtga atctgttaaa gtgcaccaac tagatgttgc cattcctttg catctcaaaa 3541 gccagctgag gaaagggccc ccactgggag gtggggaagg agaggctgag tctgcagaca 3601 caatgccgtt tgtcatgtta acaagaaaag gcaataaaca gcagtttaag atccttaatg 3661 tacccatgtc ctctcaactt gctgcaaatc actggaacca gcaacaggca gaacaagaag 3721 agaggatgag aatgaaaaag ctcacactag atatcaatga acggcaagaa caagaagatt 3781 atcaagaaat gttgcagtct cttgcacagc gcccagctcc agcaaacacc aatcgtgaga 3841 ggcggcctcg ctaccaacat ccgaagggag cacctaatgc agatctaatc tttaagactg 3901 gtgggaggag acgttgatcc agcagcacgt gtcatttcat taggtcctgt atctgatgtt 3961 gtggttagtg gagtcctcca gcaattgaat gagagcagtg gacacatctc agcaggtcgg 4021 tctagagagt tgcgaatcta aacctgggac aggctggggc caggaggcag aaacaccagc 4081 ctctgccaac accggaacaa gccgacgctt ccagacaagg cggaaaaggc cttttgtaat 4141 ggaaatctcg cgagggttaa tcttctcttg agaatggcag tcaagaaatg agatggttca 4201 cttgactact gagcagttac accaaggaga gcgtgaagga gatgattgag ccagagaaga 4261 aacgggttgt gatggtaatg gtgtggggga aatgaacttg agctttaaac ttgatttgag 4321 tttcagtgtc tctgaattga acatcccacg ttggaagaag atacatttgg gggctccagg 4381 actacagtag aaaagtatag agcaagcagg aaaatcttct agtaaaactt acatgcagga 4441 caacaaaatg atgaaagata tccaaatacc agataatcca ccaggaaggc ttttgtttag 4501 gaatttgttt caagaggaac aagggatgag ggagaaaaat ccgttttatc catcagagtc 4561 agtgctataa aattgcctat taaggtaaaa gaaaaatgtg gagactattt tactatacag 4621 agagcattaa ttcagatggc ttagaaaagt gataccagcc caagaacagg gatctaggtg 4681 agcccattgt aagtatcatt gaaaacaaaa catgcccgtc aacatgtcac agaaaacgaa 4741 cgaaggacaa caagaagtgg atgagaatat tttgttgacc ttcatgggtt tacagcctct 4801 gtctctaaac aaagtatgga aacaagtaga gcttttattt tgcttttgtt tttgttttgt 4861 tttttttttg ttttccccca ctaaatagaa atgagggtcc ttagtctgtt tctgacaatc 4921 tgttaatttc ttaggacagc tgtctttggt ttgctttcca gcaggcgtag tatatttagt 4981 cggagagcac atctgtatgc gacaacttga ttacatcttt ttttctagct attttgcatt 5041 ttttctttta ccatgtttca gtttctgcat gtagatttaa ataaaaaaca aaacttgtaa 5101 agttgtaaca tttcacatgg aaatgctgcc caatcttcac cagcttcaga aatctgacct 5161 ttgccgatgc tgcaataaag tgttgtaatt taaaaaaaaa aaaaaaaaa //