LOCUS AF220036 5979 bp mRNA linear HUM 18-MAY-2001
DEFINITION Homo sapiens tripartite motif protein TRIM9 isoform alpha (TRIM9)
mRNA, complete cds; alternatively spliced.
ACCESSION AF220036
VERSION AF220036.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5979)
AUTHORS Reymond,A., Meroni,G., Fantozzi,A., Merla,G., Cairo,S., Luzi,L.,
Riganelli,D., Zanaria,E., Messali,S., Cainarca,S., Guffanti,A.,
Minucci,S., Pelicci,P.G. and Ballabio,A.
TITLE The tripartite motif family identifies cell compartments
JOURNAL EMBO J. 20 (9), 2140-2151 (2001)
PUBMED 11331580
REFERENCE 2 (bases 1 to 5979)
AUTHORS Reymond,A. and Meroni,G.
TITLE Direct Submission
JOURNAL Submitted (29-DEC-1999) TIGEM, Via Olgettina 58, Milan, MI 20132,
Italy
FEATURES Location/Qualifiers
source 1..5979
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
gene 1..5979
/gene="TRIM9"
CDS 1801..3795
/gene="TRIM9"
/note="alternatively spliced"
/codon_start=1
/product="tripartite motif protein TRIM9 isoform alpha"
/protein_id="AAG53490.1"
/translation="MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPES
ESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVF
PPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQ
SKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVS
RRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQ
LSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQL
LARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRR
VHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLEE
CCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNST
YNARVKAFNKTGVSPYSKTLVLQTSEVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDR
VVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNR
SWFMHNNSHTNRTEGGITKGATIGVLLDFNRKNLTFFYQR"
BASE COUNT 1716 a 1430 c 1488 g 1345 t
ORIGIN
1 gaagaaatcg agaaaacaag aaagcacgaa agcaagcaag caagaaagca agcaagaaag
61 aaacaaaaga aagaaagaaa gaaagaaaac aggaaagcaa gaaagcacga aagcaagcaa
121 gcaagcaaga aagcaagcaa gaaagaaaca aaagaaagaa agaaagaaag aaagaaaaag
181 aaaacaggaa agcaagaaag cacgaaagca agcaagcaag caagaaagca agcatgaaag
241 aaacgaaaga aagaaagaaa gcaagaaaac gggaaagcaa gaaagcacga aagcaagcaa
301 gcaagcgagc gagagagaga gagagagaga gagagagaga gagagagaga gagagagagg
361 ctgggcgcgg tggctcacgc ctgtcatccc agcactttgg gaggctaagg caggcggacc
421 acctgaggtt gggagtggga gaccagcctg accaacatgg aaaaacaccg tctctactaa
481 aagtacaaac atcagccagg cacggtggcc catgcctgta atcccagcta atcaggaggc
541 tgaggcagga gaatcgcttg aacctgggag gcggagggtg cggtgagccg agatcgcacc
601 attgccctct agcctgggca acaagagtga aactctgtct caaaaaaaaa aagaagaaga
661 agaagaagaa gaagaagaag aagaagaaga agaagaagaa gaagaagaag aagaagagaa
721 agtaataaag aaagaaagaa agaaaaggca aggccaggca agtccaggca aggcaaatct
781 acctgctttc actacatctg gggagaatca ggaaagtccc caacaacaac aaggcctaaa
841 gtggagctgc catctgtcaa acccgagcgg aagagtccac gcgggttaaa gacacgaaga
901 aagacaagga aacccctgac caaggagaag aacaatcggg cccagccagg gtctgtctcc
961 cggggttgtc tgggcaacca gggagggcgg gcctccgaga ctccgtctcg aaacatcaat
1021 cacgataata acataaaatg aagttaaaaa aagaaatcac gcataattcc taacgtgttt
1081 gaggcctcga aaggcgagag gcgtacgtgt atgtcacggt ggggttgttc tgttttgttg
1141 tttttttctt ttttcttttc ttctttttcc ccagaaactc actttttaat tattttgttg
1201 cgtttcattt tcattttcat tttttggaga cggagtctcg ctctgtcgcc caggctgggt
1261 tgcagtggcg cgatctcggc tcactgcaac ctccgcctcc caggttcaag cgattctcct
1321 gcctcagctc ggcctcccga gtagctggga ttacagacag tacagcacag cacagcgccc
1381 ggctaatgtt gtgtattgtg agtagagacg gggtttcacc atactggccc tgttggtctg
1441 accgcctctt gatccaccgg ccttggcctc ccaaagtgag gggatgacag gcttgagcca
1501 ccgcgcaggg cccatttatt tattttattt tatttattta ttttaattta tgtatgtatg
1561 tatgtatgta tgtatgtatt tatttatgta tttatttttg agacggagtt tcgctcttgt
1621 tgctcagact ggagtgcgag ctagcgcctc tctgggtgtc cgtgccagtg ctgcgcggga
1681 aggcaccacc accacagccg ccgccgctgg ccagggtgct ggacaagacg ggcccgtcgg
1741 ccacctcgcc agctcaggca cccgctgcag ccgtcgctgt ctcctcccag accggtcccc
1801 atggaggaga tggaagagga gttgaaatgc cccgtgtgcg gctccttcta tcgggagccc
1861 atcatcctgc cctgctctca caatttgtgt caggcgtgcg cccgcaacat cctggtgcag
1921 accccagagt ctgaatcccc ccagagccat cgggccgcgg gctccggggt ctccgactat
1981 gactatctgg acctggacaa gatgagccta tacagcgagg cggacagcgg ctatggctcc
2041 tacggggggt tcgccagcgc ccccactacc ccgtgccaga agtcccccaa cggcgtccgc
2101 gtgtttcccc cggctatgcc gccaccggcc acccacttgt caccggccct ggccccggtg
2161 ccccgcaact cctgtatcac ctgcccccag tgtcaccgca gcctcatcct ggatgaccgg
2221 gggctccgcg gcttccccaa gaatcgcgta ctggaagggg taattgaccg ctaccagcag
2281 agcaaagccg cggccctcaa gtgccagctc tgcgagaagg cgcccaagga agccaccgtc
2341 atgtgcgaac agtgcgatgt cttctactgc gatccgtgcc gcctgcgctg ccacccgccc
2401 cgggggcccc tagccaagca ccgcctggtg cccccggccc agggtcgtgt gagccggagg
2461 ctgagcccac gcaaggtctc cacctgcaca gaccacgagc tggagaacca cagcatgtac
2521 tgcgtgcaat gcaagatgcc cgtgtgctac cagtgcttgg aggagggcaa acactccagc
2581 cacgaagtca aggctctggg ggccatgtgg aaactacata agagccagct ctcccaggcg
2641 ctgaacggac tgtcagacag ggccaaagaa gccaaggagt ttctggtaca gctgcgcaac
2701 atggtccagc agatccagga gaacagtgtg gagtttgaag cctgtctggt ggcccaatgt
2761 gatgccctca tcgatgccct caacagaaga aaagcccagc tgctggcccg cgtcaacaag
2821 gagcatgagc acaagctgaa ggtggttcga gatcagatct ctcactgcac agtgaaattg
2881 cgccagacca caggtctcat ggagtactgc ttggaggtga ttaaggaaaa tgatcctagt
2941 ggttttttgc agatttctga cgccctcata agaagagtgc acctgactga ggatcagtgg
3001 ggtaaaggca cactcactcc aaggatgacc acggactttg acttgagtct ggacaacagc
3061 cctctgctgc aatccatcca ccagctggat ttcgtgcaag tgaaagcttc ctctccagtc
3121 ccagcaaccc ctatcctaca gctggaggaa tgttgtaccc acaacaacag cgctacgttg
3181 tcctggaaac agccacctct gtccacggtg cccgccgatg gatacattct ggagctggat
3241 gatggcaacg gtggtcaatt ccgggaggtg tatgtgggga aggagacaat gtgcactgtg
3301 gatggtcttc acttcaacag cacatacaac gctcgggtca aggccttcaa caaaacagga
3361 gtcagcccgt acagcaagac cctggtcctc caaacgtctg aggtggcctg gtttgctttc
3421 gaccctggct cggcgcactc ggacatcatc ctctccaatg acaacctgac agtgacctgt
3481 agtagctatg atgaccgggt ggtgctaggg aagactggct tctccaaggg catccactac
3541 tgggagctca cggtagatcg ctatgacaac caccctgatc ctgcctttgg tgtggctcgc
3601 atggacgtga tgaaggatgt gatgttagga aaagacgaca aagcttgggc aatgtatgtg
3661 gacaataacc ggagctggtt catgcacaac aactcgcaca ccaacagaac tgagggaggg
3721 atcacaaaag gggccacaat tggggtcctc ctcgacttca atagaaaaaa cttgacattt
3781 ttttatcaac gatgaacaac aaggtcccat agcatttgat aacgtggagg gcctcttctt
3841 ccctgcggtc agcctgaaca ggaacgtgca ggtcacgctg cacaccgggc tcccagtccc
3901 cgacttctac tccagcagag catcaatagc ctaaggatgt gccgtggagg cgccagctgc
3961 ctgttcttac ctccgcctgc gagagccaca gcaaggagct cagccagccg tggtggggtg
4021 cagagttggc aggagtggga gaaggaggag agaaaagctg gtcctctgca gtctttacac
4081 ccacagctct gcccttttcc ctttcaacct ctcctccgct gtcatgcctg cttccgcttc
4141 catgtccaac aattctaacc aacaaaggac ctagacagcc caccaagtca cttggttccc
4201 actcccagat tttgctttta tttaacttaa ttttttatgt aggtgagtta tattttcttt
4261 cttttctgat caggttattg gtgacttact ggactggcac cgccaggaga aaattctcct
4321 gctaactttt tttcttaagc tttctgtcaa acaatgaggt tgtaggggga ggtagggaag
4381 aatgagctga atttgtagca tacagcttac ctgctagaat gttcttaccc tcttacctct
4441 cctgtagcgt tagctctgca gagctaagct ttgggagaat gaatctatca ctgagaagtt
4501 ttactactca ttgaagcaca aaaatatccg ctacacaggt tcacatcagg gtaggatcgt
4561 taggatggct ctataattag gataggccag aaccctggcc actgtataaa attggaaagt
4621 ctctaagaca caggcaaacc aggggactta atgatttggt tcgtttattt aataaaagct
4681 tttaattgag aacctactat tgaccaggca ctgttcaaga cactagaaca ttatgttcta
4741 gacactgtgg ggacacagtg gtgaacagac aggcatggtc tctgcccttc ggagcttata
4801 ttccagtagg agaaaaagca aaaataaaat aattataaat ggtcatatgt actagaaagg
4861 aaatgggcaa gggtcaaaga gactcatggg caagatcttt caggcttcct agaatgatgc
4921 taaaaatcca cacattctgg ccatagcacc agaaatgtac caactcaatg ccttttcagc
4981 tgcactattt aattatggta cctgctgcca ctcatcacag agcccttctt ggtagaaatg
5041 atgtcagcat tcttatttgc tgatgctgct atgataccac gccttaaaaa ttgacagttg
5101 aaaaaaaaaa gagtgaccag agggcaaagg acccattctc agtaatggga gatcttgagt
5161 tgcagtccac agcattcaca ttctcaggat aaacatgctt gtctccatat atactatctg
5221 tgcctgttat gaatgaaaaa tccatccact ctgctgccat tcacagccta atcttctgga
5281 gtagtccaaa caatgtttgg aaaaacatgg gactgtatgt cattactatg actgatagca
5341 gaataataat gcatcttact tctatataga gatagactta cataggttac ccttgaaatt
5401 cattagtttg tcataaagtt ttaggaaagg taggacccgg aaagaagttc taattagttg
5461 tctaaatatt tttcagtgag ccaagaaatt caccatgaaa aaacaagaat aacaaataga
5521 agggaagaga taggatggga aagctaacaa attaaagttt tggcaaaaag gaatatatgt
5581 aaatagctaa ttatttactt ttgtgcttac tttatttaga ttatttctat cagttacaat
5641 ctttttctag ttaagtgtac ctaatttatg gaatgggtgc tatcctgttt atgtgtgtct
5701 tggtttttct tggctacaga aaaactgttg cagggcaaca ctagtttgat atttgattta
5761 ctctccaatg agactcaatg gctgggccgt ggtagactca tagttcctct tgttctttat
5821 taaattcatc ctgctaatta gatttctagt gacttgtaac atgtagttta cactgaattg
5881 caattacaga tgcatacaac tactatacta gaaaaaattg tcatttctga tgtgccaata
5941 aatgattttt atgagagaaa aaaaaaaaaa aaaaaaaaa
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