LOCUS AF206516 4172 bp mRNA linear HUM 01-AUG-2001 DEFINITION Homo sapiens protocadherin-S mRNA, complete cds. ACCESSION AF206516 VERSION AF206516.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4172) AUTHORS Kools,P.F.J. and Van Roy,F. TITLE Identification and cloning of a human chromosome X-linked protocadherin gene with seven extracellular domains and an unusual large cytoplasmic domain JOURNAL Unpublished REFERENCE 2 (bases 1 to 4172) AUTHORS Kools,P.F.J. and Van Roy,F. TITLE Direct Submission JOURNAL Submitted (18-NOV-1999) Department of Molecular Biology, University of Ghent, Flanders Interuniversity Institute for Biotechnology, Ledeganckstraat 35, Ghent B-9000, Belgium FEATURES Location/Qualifiers source 1..4172 /db_xref="H-InvDB:HIT000073881" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS 1..4044 /note="transmembrane glycoprotein of the cadherin family" /codon_start=1 /product="protocadherin-S" /protein_id="AAK82655.1" /translation="MDLLSGTYIFAVLLACVVFHSGAQEKNYTIREEMPENVLIGDLL KDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARIDREKLCAGIPR DEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSKYTL PAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEKDTYVMK VKVEDGGFPQRSSTAILQVSVTDPNANHPVFKEPEIEVSIPENAPVGTSVTQLHATDA DIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDGGL MPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSA MLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPD APPEFSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDN SPVFTHNEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGV IRPNISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSY ELVLPSTNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCD VTDLGLHRVLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNT EIADVSSPTSDYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWAT PNPENRQMIMMKKKKKKKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQ TMGKYNWVTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTF VACDSISKCSSSSSDPYSVSDCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTME IWIHPQPQRKSEGKVAGKSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLG YPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDNCTQECLIY GHSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQT IALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLP QVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKV IPLTTFTPRQQARPSRGDSPIMEEHPL" BASE COUNT 1252 a 998 c 871 g 1051 t ORIGIN 1 atggacttgt tgtccgggac gtacattttc gcggtcctgc tagcatgcgt ggtgttccac 61 tctggcgccc aggagaaaaa ctacaccatc cgagaagaaa tgccagaaaa cgtcctgata 121 ggcgacttgt tgaaagacct taacttgtcg ctgattccaa acaagtcctt gacaactgct 181 atgcagttca agctagtgta caagaccgga gatgtgccac tgattcgaat tgaagaggat 241 actggtgaga tcttcactac tggcgctcgc attgatcgtg agaaattatg tgctggtatc 301 ccaagggatg agcattgctt ttatgaagtg gaggttgcca ttttgccgga tgaaatattt 361 agactggtta agatacgttt tctgatagaa gatataaatg ataatgcacc attgttccca 421 gcaacagtta tcaacatatc aattccagag aactcggcta taaactctaa atatactctc 481 ccagcggctg ttgatcctga cgtaggcata aacggagttc aaaactacga actaattaag 541 agtcaaaaca tttttggcct cgatgtcatt gaaacaccag aaggagacaa gatgccacaa 601 ctgattgttc aaaaggagtt agatagggaa gagaaggata cctacgtgat gaaagtaaag 661 gttgaagatg gtggctttcc tcaaagatcc agtactgcta ttttgcaagt tagtgttact 721 gatccaaatg ccaaccaccc agtctttaag gagccagaga ttgaagtcag tataccagaa 781 aatgctcctg taggcacttc agtgacacag ctccatgcca cagatgctga cataggtgaa 841 aatgccaaga tccacttctc tttcagcaat ctagtctcca acattgccag gagattattt 901 cacctcaatg ccaccactgg acttatcaca atcaaagaac cactggatag ggaagaaaca 961 ccaaaccaca agttactggt tttggcaagt gatggtggat tgatgccagc aagagcaatg 1021 gtgctggtaa atgttacaga tgtcaatgat aatgtcccat ccattgacat aagatacatc 1081 gtcaatcctg tcaatgacac agttgttctt tcagaaaata ttccactcaa caccaaaatt 1141 gctctcataa ctgtgacgga taaggatgcg gaccataatg gcagggtgac atgcttcaca 1201 gatcatgaaa tccctttcag attaaggcca gtattcagta atcagttcct cctggagact 1261 gcagcatatc ttgactatga gtccacaaaa gaatatgcca ttaaattact ggctgcagat 1321 gctggcaaac ctcctttgaa tcagtcagca atgctcttca tcaaagtgaa agatgaaaat 1381 gacaatgctc cagttttcac ccagtctttc gtaactgttt ctattcctga gaataactct 1441 cctggcatcc agttgacgaa agtaagtgca atggatgcag acagtgggcc taatgctaag 1501 atcaattacc tgctaggccc tgatgctcca cctgaattca gcctggattg tcgtacaggc 1561 atgctgactg tagtgaagaa actagataga gaaaaagagg ataaatattt attcacaatt 1621 ctggcaaaag ataacggggt accaccctta accagcaatg tcacagtctt tgtaagcatt 1681 attgatcaga atgacaatag cccagttttc actcacaatg aatacaactt ctatgtccca 1741 gaaaaccttc caaggcatgg tacagtagga ctaatcactg taactgatcc tgattatgga 1801 gacaattctg cagttacgct ctccatttta gatgagaatg atgacttcac cattgattca 1861 caaactggtg tcatccgacc aaatatttca tttgatagag aaaaacaaga atcttacact 1921 ttctatgtaa aggctgagga tggtggtaga gtatcacgtt cttcaagtgc caaagtaacc 1981 ataaatgtgg ttgatgtcaa tgacaacaaa ccagttttca ttgtccctcc ttccaactgt 2041 tcttatgaat tggttctacc gtccactaat ccaggcacag tggtctttca ggtaattgct 2101 gttgacaatg acactggcat gaatgcagag gttcgttaca gcattgtagg aggaaacaca 2161 agagatctgt ttgcaatcga ccaagaaaca ggcaacataa cattgatgga gaaatgtgat 2221 gttacagacc ttggtttaca cagagtgttg gtcaaagcta atgacttagg acagcctgat 2281 tctctcttca gtgttgtaat tgtcaatctg ttcgtgaatg agtcggtgac caatgctaca 2341 ctgattaatg aactggtgcg caaaagcact gaagcaccag tgaccccaaa tactgagata 2401 gctgatgtat cctcaccaac tagtgactat gtcaagatcc tggttgcagc tgttgctggc 2461 accataactg tcgttgtagt tattttcatc actgctgtag taagatgtcg ccaggcacca 2521 caccttaagg ctgctcagaa aaacaagcag aattctgaat gggctacccc aaacccagaa 2581 aacaggcaga tgataatgat gaagaaaaag aaaaagaaga agaagcattc ccctaagaac 2641 ttgctgctta attttgtcac tattgaagaa actaaggcag atgatgttga cagtgatgga 2701 aacagagtca cactagacct tcctattgat ctagaagagc aaacaatggg aaagtacaat 2761 tgggtaacta cacctactac tttcaagccc gacagccctg atttggcccg acactacaaa 2821 tctgcctctc cacagcctgc cttccaaatt cagcctgaaa ctcccctgaa ttcgaagcac 2881 cacatcatcc aagaactgcc tctcgataac acctttgtgg cctgtgactc tatctccaag 2941 tgttcctcaa gcagttcaga tccctacagc gtttctgact gtggctatcc agtgacgacc 3001 ttcgaggtac ctgtgtccgt acacaccaga ccgccaatga aggaggttgt gcgatcttgc 3061 acccccatga aagagtctac aactatggag atctggattc atccccaacc acagcggaaa 3121 tctgaaggga aagtggcagg aaagtcccag cggcgtgtca catttcacct gccagaaggc 3181 tctcaggaaa gcagcagtga tggtggactg ggagaccatg atgcaggcag ccttaccagc 3241 acatctcatg gcctgcccct tggctatcct caggaggagt actttgatcg tgctacaccc 3301 agcaatcgca ctgaagggga tgggaactcc gatcctgaat ctactttcat acctggacta 3361 aagaaagctg cagaaataac tgttcaacca actgtggaag aggcctctga caactgcact 3421 caagaatgtc tcatctatgg ccattctgat gcctgctgga tgccggcatc tctggatcat 3481 tccagctctt cgcaagcaca ggcctctgct ctatgccaca gcccaccact gtcacaggcc 3541 tctactcagc accacagccc acgagtgaca cagaccattg ctctctgcca cagccctcca 3601 gtgacacaga ccatcgcatt gtgccacagc ccaccaccga tacaggtgtc tgctctccac 3661 cacagtcctc ctctagtgca ggctactgca cttcaccaca gcccaccatc agcacaggcc 3721 tcagccctct gctacagccc tcctttagca caggctgctg caatcagcca cagctctcct 3781 ctgccacagg ttattgccct ccatcgtagt caggcccaat catcagtcag tttgcagcaa 3841 ggttgggtgc aaggtgctga tgggctatgc tctgttgatc agggagtgca aggtagtgca 3901 acatctcagt tttacaccat gtctgaaaga cttcatccca gtgatgattc aattaaagtc 3961 attcctttga caaccttcac tccacgccaa caggccagac cgtccagagg tgattccccc 4021 attatggaag aacatccctt gtaaagctaa aatagttact tcaaattttc agaaaagatg 4081 tatatagtca aaatttaaga tacaattcca atgagtattc tgattatcag atttgtaaat 4141 aactatgtaa atagaaacag ataccagaat aa //