LOCUS AF172847 4175 bp mRNA linear HUM 30-DEC-2001
DEFINITION Homo sapiens sorting nexin 9 (SNX9) mRNA, complete cds.
ACCESSION AF172847
VERSION AF172847.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4175)
AUTHORS Zhang,J.S. and Smith,D.I.
TITLE Identification of differentially expressed genes in matched
prostate cancer and normal epithelial cell lines
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4175)
AUTHORS Zhang,J.S. and Smith,D.I.
TITLE Direct Submission
JOURNAL Submitted (27-JUL-1999) Laboratory of Medicine and Pathology, Mayo
Clinic, 200 SW 1st Street, Rochester, MN 55905, USA
FEATURES Location/Qualifiers
source 1..4175
/db_xref="H-InvDB:HIT000072438"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="6"
/map="6q23-q27"
/cell_type="normal prostate epithelial"
/note="cell line"
gene 1..4175
/gene="SNX9"
CDS 145..1932
/gene="SNX9"
/note="putative ATP/GTP binding protein; loss of
expression in the tumor"
/codon_start=1
/product="sorting nexin 9"
/protein_id="AAL54871.1"
/translation="MATKARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRN
IKGERGLVPTDYVEILPSDGKDQFSCGNSVADQAFLDSLSASTAQASSSAASNNHQVG
SGNDPWSAWSASKSGNWESSEGWGAQPEGAGAQRNTNTPNNWDTAFGHPQAYQGPATG
DDDDWDEDWDGPKSSSYFKDSESADAGGAQRGNSRASSSSMKIPLNKFPGFAKPGTEQ
YLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTP
TNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAW
MTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDL
VEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFS
SSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIG
THKGAIEKVKESDKLVATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSV
IRLYLEQQVQFYETIAEKLRQALSRFPVM"
BASE COUNT 1177 a 938 c 1014 g 1046 t
ORIGIN
1 cggggccgag gcggaggagc ggccgccgcg ccggggccca gccggagccg ccgccctcgc
61 ccttgccttt gcctgcgcgg ctcagaatca ccatccgcgg cggggagacg agccggccgt
121 cccgggccgg gggacccgcc cgccatggcc accaaggctc gggttatgta tgattttgct
181 gctgaacctg gaaataatga actgacggtt aatgaaggag aaatcatcac aatcacaaat
241 ccggatgtag gtggaggatg gctggaagga agaaacatca aaggagaacg agggctggtt
301 cccacagact acgttgaaat tttacccagt gatggaaaag atcaattttc ttgtggaaat
361 tcagtggctg accaagcctt ccttgattct ctctcagcca gcacagctca ggccagttcg
421 tcggctgcca gcaacaatca ccaggttggc agtggcaatg acccctggtc agcctggagt
481 gcctccaaat ctgggaactg ggaaagctca gaaggctggg gggcccagcc agagggggct
541 ggagcccaaa gaaacacaaa cactcccaac aactgggaca ctgccttcgg ccacccccag
601 gcctaccaag gaccagcaac tggtgatgat gatgactggg atgaagactg ggatgggccc
661 aaatcctctt cctactttaa ggattcagag tcagctgatg caggcggcgc tcagcgagga
721 aacagtcgtg ctagttcctc atccatgaaa attcccctta acaaatttcc tggatttgcg
781 aaacctggca cggaacagta tttgttggcc aaacaactag caaaacccaa agagaaaatt
841 cccatcattg ttggagatta tggcccaatg tgggtttatc ctacctctac ttttgactgt
901 gtggtagcag atcccaggaa aggctccaaa atgtatggtc taaagagcta catcgaatat
961 cagctaacac ctactaacac taatcgatct gtaaaccaca ggtataagca ctttgactgg
1021 ttatatgagc gtctcctggt taagtttggg tcagccattc caatcccttc tcttccagac
1081 aaacaagtca caggccgctt tgaagaggaa tttatcaaaa tgcgcatgga gagacttcag
1141 gcctggatga ccaggatgtg tcgccatcca gtaatctcag aaagtgaagt tttccagcag
1201 ttcctaaatt tccgagatga gaaggaatgg aaaactggaa agaggaaggc cgagagagat
1261 gagctggcgg gagtcatgat attttccacc atggaaccag aggcacctga cttggactta
1321 gtagaaatag agcagaagtg cgaggctgtg gggaagttca ccaaggccat ggatgacggc
1381 gtgaaggagc tgctgacggt ggggcaggag cactggaagc gctgcacggg cccattaccc
1441 aaggaatatc agaagatagg aaaggccttg cagagtttgg ccacagtgtt cagttccagt
1501 ggctatcaag gtgaaacaga tctcaatgat gcaataacag aagcaggaaa gacttatgaa
1561 gaaattgcca gtctcgtggc agaacagcca aagaaagatc tccatttcct gatggaatgt
1621 aatcacgagt ataaaggttt tcttggctgc ttccctgaca tcattggcac tcacaaggga
1681 gcaatagaaa aagtgaaaga aagtgacaaa ctagttgcaa caagtaaaat caccctacaa
1741 gacaaacaga acatggtgaa gagagtcagc atcatgtctt acgcgttgca agctgagatg
1801 aatcactttc acagtaaccg gatctatgat tacaacagtg tcatccgcct gtacctggag
1861 cagcaagtgc aattttacga aacgattgca gaaaagctga ggcaggccct cagccgcttt
1921 ccagtgatgt aggacagaac gggccttgaa gagaatgccg cgtgctttct cctgacttgg
1981 ggcaatgcaa ttcaaaactt ttttccccta ttattcagaa aaaaaaggaa acaaaaccaa
2041 aaagaaagag ttgcaaaaaa ctgcatttat tttattagcc accctaaatg cgtcagttat
2101 ttagggatgg tcttttgttc atttccgcat ccattattta aaccagtgga aattgtctct
2161 atttttggaa agtacttaaa agttaccaga attttcaatg gaaaatgagg ggtttctccc
2221 cactgatatt ttacatagag tcataattta tatgtcttat aaattataag tcttatataa
2281 tttataagtc tcccacaatc ttccagttct tacccagtgt cagataatta attactaatt
2341 actttcttaa aaacatgaac tatgccagaa taaaaaatat ctatgtttgt atatttttat
2401 aactcctttc agtcctctgg ggctcctgtc attgagggaa gtcgttacgc ctttcactgc
2461 cacagttaca gctcaagtgc ttacacttca agagggagga cgctgggggc ccctggggtg
2521 actagtgcca tcgtgggtgt gtgggcaggt gggccatccc atgtccctcc aggggacccc
2581 acagcctggc agatgagcag atacccctgg ccacccatgt cctcagcgac atttctgatg
2641 tgctgctctt atgtgaggac cagtgctttc tctctttgca cttccttcct aatcttggtt
2701 aaggcatgtt ttatgccatg aagaatacat tagaagaatt gagggacttt gtagagaatt
2761 ttgtggcttt ggtccgacgg gtgagtggct gtgcggaggc ctgtgttcgg gagggcctgg
2821 gggaaggagg gcacccagca ccccggcgtc tctggccctt tcttattctt tggctcctca
2881 tccaccgtga tgagaagcgc tgctgtggcc acggcacact gcttggcttg ggtggcgggt
2941 tcatggccag ttggtgtcat cagcaaagag aaaaagcaca ggttagctcc ccattagatg
3001 gaaaagtgta gggactgaga agggctgcag cctcagcagt gtacagagtc cccggcgctc
3061 tgaggttgga gagaaagaac agaccagcgc ccttcctgac tacatccgaa acttcacaca
3121 gggtgtttct gagcaccagc acttccagcg cttcacttaa cggcataaag caaaacagga
3181 ccttggcaca ccgtcagctc gaactcaaca ctggcagcca ccgtctcacc cctgcggagg
3241 agcgctcccg tctcccacag gtgccttacc gcgttccctc ccgctgcttt catttttctg
3301 accttaataa ttacgggaaa tggaaagtct gggccagcat caataaaatg acaccaaaaa
3361 taagtagatg aaatcaaatg aatatgagaa catcttgttc ttcaatatca cgggtttttg
3421 ttaatgtttc ataagtaatt ctccccactt gatttttctt ctataaaatc ccatagaaca
3481 atgtttatgc tatagccatt taatatatgt acaaattgta aagaatatgt ataaatgttt
3541 tacacgaatg taagagcatg tagaagccaa catataaata aattgtttaa aaaaactgta
3601 cagtaaattc tcaaatcact ttttcaaaac actttttgga ctttgtgtgt gatttttgtt
3661 gttgttgtta agtacttttt attccagctg ctgaaaatgg tccaggtaat gaattcttcc
3721 ccaaatccta tttcttctga catgaattca tcatttcagt tccgtaggtc aagtgttgcg
3781 gtccgggaag cgtatcataa ccacctggga agttgccaat gaagcagaca agtctcccag
3841 tgtctgactc tcggatattt ggatttgact ggtgtgaggc aaagtgaaaa agggatgggg
3901 gaaatggaga tggcacgggc tcctcagagc gtggtagccg acttgaggaa aagcagaggg
3961 aatgtgaaag aaaataagag aatccacggg atttgatgcc tggaagattc tccttcaagt
4021 ggcaacatgg catatatatc cttctccggg gagtcacatg caccatttgg ttcttagata
4081 cgttgatgtt ttgattttta atgatttgta tcaacctgta ggtaccacag aagagctgta
4141 gtcatacaat cacataactt ttacaaatat agtgg
//