LOCUS AF169693 4412 bp mRNA linear HUM 26-JUL-2016
DEFINITION Homo sapiens protocadherin 13 (PCDH13) mRNA, partial cds.
ACCESSION AF169693
VERSION AF169693.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4412)
AUTHORS Kools,P.F.J. and Van Roy,F.
TITLE Identification and characterization of a novel human protocadherin
localized on chromosome 13q21, a region containing also
protocadherin-8 and -9
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4412)
AUTHORS Kools,P.F.J. and Van Roy,F.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-1999) Department of Molecular Biology, University
of Ghent, Flanders Interuniversity Institute for Biotechnology,
Ledeganckstraat 35, Ghent B-9000, Belgium
FEATURES Location/Qualifiers
source 1..4412
/db_xref="H-InvDB:HIT000072357"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="13"
/map="13q21"
/clone="VR2-6"
gene <1..4412
/gene="PCDH13"
CDS <1..2846
/gene="PCDH13"
/note="transmembrane protein of the cadherin superfamily;
contains only a small cytoplasmic domain; putative
alternative short form lacking the 3' exon sequences"
/codon_start=3
/product="protocadherin 13"
/protein_id="AAF89690.1"
/translation="GNARSSQALGVSWCPATWHPRLDMGRLHRPRSSTSYRNLPHLFL
FFLFVGPFSCLGSYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRSAGRPDPQSQLP
ERTGAEWNPPLSFSLASRGLSGQYVTLDNRSGELHTSAQEIDREALCVEGGGGTAWSG
SVSISSSPSDSCLLLLDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENA
PVNTRLAIEHPAVDPDVGINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDR
ETQDQYVSIITAEDGGSPPLLGSATLTIGISDINDNCPLFTDSQINVTVYGNATVGTP
IAAVQAVDKDLGTNAQITYSYSQKVPQASKDLFHLDENTGVIKLFSKIGGSVLESHKL
TILANGPGCIPAVITALVSIIKVIFRPPEIVPRYIANEIDGVVYLKELEPVNTPIAFF
TIRDPEGKYKVNCYLDGEGPFRLSPYKPYNNEYLLETTKPMDYELQQFYEVAVVAWNS
EGFHVKRVIKVQLLDDNDNAPIFLQPLIELTIEENNSPNAFLTKLYATDADSEERGQV
SYFLGPDAPSYFSLDSVTGILTVSTQLDREEKEKYRYTVRAVDCGKPPRESVATVALT
VLDKNDNSPRFINKDFSFFVPENFPGYGEIGVISVTDADAGRNGWVALSVVNQSDIFV
IDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGEPALSSTAKITILLLDINDNPPLVLF
PQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTG
NITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKE
PEINIEEKEPQISIEPTHRKVESVSCMPTLVALSVISLGSITLVTGMGIYICLRKGEK
HPREDENLEVQIPLKGKIDLHMRERKPMDISNI"
BASE COUNT 1265 a 889 c 967 g 1290 t
ORIGIN
1 gagggaatgc gcgcagctca caggccctgg gagtgagctg gtgcccggcg acctggcacc
61 cgcgcctgga tatggggcgt ctacatcgtc ccaggagcag caccagctac aggaacctgc
121 cgcatctgtt tctgtttttc ctcttcgtgg gacccttcag ctgcctcggg agttacagcc
181 gggccaccga gcttctgtac agcctaaacg agggactacc cgcgggggtg ctcatcggca
241 gcctggccga ggacctgcgg ctgctgccca ggtctgcagg gaggccggac ccgcagtcgc
301 agctgccaga gcgcaccggt gctgagtgga acccccctct ctccttcagc ctggcctccc
361 ggggactgag tggccagtac gtgaccctag acaaccgctc tggggagctg cacacttcag
421 ctcaggagat cgacagggag gccctgtgtg ttgaaggggg tggagggact gcgtggagcg
481 gcagcgtttc catctcctcc tctccttctg actcttgtct tttgctgctg gatgtgcttg
541 tcctgcctca ggaatacttc aggtttgtga aggtgaagat cgccatcaga gacatcaatg
601 acaacgcccc gcagttccct gtttcccaga tctcggtgtg ggtcccggaa aatgcacctg
661 tnaacacccg actggccata gagcatcctg ctgtggaccc agatgttggc attaatgggg
721 ttcagaccta tcgcttactg gactaccatg gtatgttcac cctggacgtg gaggagaatg
781 agaatgggga gcgcaccccc tacctaattg tcatgggtgc tttggacagg gaaacccagg
841 accagtatgt gagcatcatc acagctgagg atggtgggtc tccaccactt ttgggcagtg
901 ccactctcac cattggcatc agtgacatta atgacaattg ccctctcttc acagactcac
961 aaatcaatgt cactgtgtat gggaatgcta cagtgggcac cccaattgca gctgtccagg
1021 ctgtggataa agacttgggg accaatgctc aaattactta ttcttacagt cagaaagttc
1081 cacaagcatc taaggattta tttcacctgg atgaaaacac tggagtcatt aaacttttca
1141 gtaagattgg aggaagtgtt ctggagtccc acaagctcac catccttgct aatggaccag
1201 gctgcatccc tgctgtaatc actgctcttg tgtccattat taaagttatt ttcagacccc
1261 ctgaaattgt ccctcgttac atagcaaacg agatagatgg tgttgtttat ctgaaagaac
1321 tggaacccgt taacactccc attgcgtttt tcaccataag agatccagaa ggtaaataca
1381 aggttaactg ctacctggat ggtgaagggc cgtttaggtt atcaccttac aaaccataca
1441 ataatgaata tttactagag accacaaaac ctatggacta tgagctacag cagttctatg
1501 aagtagctgt ggtggcttgg aactctgagg gatttcatgt caaaagggtc attaaagtgc
1561 aacttttaga tgacaatgat aatgctccaa ttttccttca acccttaata gaactaacca
1621 tcgaagagaa caactcaccc aatgcctttt tgactaagct gtatgctaca gatgccgaca
1681 gcgaggagag aggccaagtt tcatattttc tgggacctga tgctccatca tatttttcct
1741 tagacagtgt cacaggaatt ctgacagttt ctactcagct ggaccgagaa gagaaagaaa
1801 agtacagata cactgtcaga gctgttgact gtgggaagcc acccagagaa tcagtagcca
1861 ctgtggccct cacagtgttg gataaaaatg acaacagtcc tcggtttatc aacaaggact
1921 tcagcttttt tgtgcctgaa aactttccag gctatggtga gattggagta attagtgtaa
1981 cagatgctga cgctggacga aatggatggg tcgccctctc tgtggtgaac cagagtgata
2041 tttttgtcat agatacagga aagggtatgc tgagggctaa agtctctttg gacagagagc
2101 agcaaagctc ctatactttg tgggttgaag ctgttgatgg gggtgagcct gccctctcct
2161 ctacagcaaa aatcacaatt ctccttctag atatcaatga caaccctcct cttgttttgt
2221 ttcctcagtc taatatgtct tatctgttag tactgccttc tactctgcca ggctccccgg
2281 ttacagaagt ctatgctgtc gacaaagaca caggcatgaa tgctgtcata gcttacagca
2341 tcatagggag aagaggtcct aggcctgagt ccttcaggat tgaccctaaa actggcaaca
2401 ttactttgga agaggcattg ctgcagacag attatgggct ccatcgctta ctggtgaaag
2461 tgagtgatca tggttatccc gagcctctcc actccacagt catggtgaac ctatttgtca
2521 atgacactgt cagtaatgag agttacattg agagtctttt aagaaaagaa ccagagatta
2581 atatagagga gaaagaacca caaatctcaa tagaaccgac tcataggaag gtagaatctg
2641 tgtcttgtat gcccacctta gtagctctgt ctgtaataag cttgggttcc atcacactgg
2701 tcacagggat gggcatatac atctgtttaa ggaaagggga aaagcatccc agggaagatg
2761 aaaatttgga agtacagatt ccactgaaag gaaaaattga cttgcatatg cgagagagaa
2821 agccaatgga tatttctaat atttgatatt tcatggtgga ataacacaga gaaatgtttt
2881 aactgacttt ggatcttcat cacctaaaaa agagtgtgtt gatggcagtt ccaatgaagg
2941 acaactaatt tataacttgt tctatattgt aaatagctgt ttacaggttt ttaaatttaa
3001 attcagaggt tataaaatgt gtacagcatt tttaagtgaa aattagtact aacagctata
3061 ggacttgtat ttaaaaaaaa aaaaaaaaaa agcttggaca tggtttgcag ctttcataca
3121 ccaagcagtt gattgataaa acctgggagt aaggtaagaa aaatggaaca aatttttatc
3181 taaaaattcc tgtcaccaca agagggcatc agctgctcct ttgcaggaaa ctggggtatt
3241 gtacttggca gttgtacatg aaattaatga aagagtatat tttaaatata ttgtttttaa
3301 cattaaacaa atatgaaatt aaagtaaatt aaatttcacc ctatttaaac atatgataaa
3361 aaaagaaatg cacttgtaaa cagaatgttt attacctcat aagtgcatat atagtttgaa
3421 agagaaggca ttaaaaagaa gtgcgattcc tttttagcaa ggataaaatc attgccttgt
3481 gttacagatt cagcctgctg aagagtattc cactttctgt gtactcgaat tgctttctgt
3541 ttgctttacc actgcacttg ttattattac aagggaaata gatatataca tacatatata
3601 tattcttcat tacaggaaat gtaactagat attgtgccca agaaaaacag ccagaagcaa
3661 agaaatgctt caatctttag ttgcttcata ggcattcatg acattttagt gctttcacaa
3721 cttgttggtc gtactttata cttgggttat atattagact tttataggct tgaaatcatc
3781 catcacataa gaaaatagaa atcatattaa aagtgaattc ttctagaggc ttgtgtacac
3841 tactggttgt tttagttggg ccttttatat gaaagttata ctgtacttat ctttttgttg
3901 ttgtttaggt ttgttgacta ccatttctgg cttcctttct ttggttttgg attaaatcca
3961 acagtttatt tgtaagccct gcagcagatt tctttgataa tttagctttt actgaatctc
4021 ttgcaatgaa gaaagctatt tcatcagtga tttatcactt tcaattcatt gtgtgagctg
4081 gaaatattat tttatatgag agctatagca aaataatctg tataaacaag gaatgtgtta
4141 gcttaaactg gatcatttta ctttttggca tcatgcatct gtactgtacc aaaagtgttt
4201 atatgtctgc aaattaaagg tatatatttt cataatttct ttctcacttt tagcatttta
4261 tatttgaaca tgggcttgtt atttcactga agtgcctgtc atttgtttgt ttttagggtt
4321 aaatgtgggt aacctgtagt attctgctat actaaagttt atattaaatg aattcattac
4381 tcaaaaagaa aatgggtaaa ttattaaaaa aa
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